Wall clock time and date at job start Sat Apr 11 2020 00:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47477 * 270.00251 * 3 2 1 5 5 H 1.48489 * 109.47119 * 30.00832 * 3 2 1 6 6 H 1.48507 * 109.46780 * 150.00810 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00364 * 170.00098 * 10 9 7 12 12 C 1.53230 * 109.34186 * 187.25323 * 11 10 9 13 13 N 1.47082 * 108.51951 * 306.16425 * 12 11 10 14 14 C 1.34777 * 120.87981 * 231.18555 * 13 12 11 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72731 * 14 13 12 17 17 O 1.42899 * 109.47143 * 180.27800 * 16 14 13 18 18 C 1.35955 * 117.00045 * 179.97438 * 17 16 14 19 19 C 1.38662 * 120.06633 * 0.02562 * 18 17 16 20 20 C 1.38176 * 119.97311 * 179.97438 * 19 18 17 21 21 C 1.38264 * 120.09472 * 0.02562 * 20 19 18 22 22 C 1.38255 * 120.12500 * 359.97438 * 21 20 19 23 23 C 1.38335 * 120.03005 * 359.70339 * 22 21 20 24 24 F 1.35106 * 120.04749 * 180.27685 * 23 22 21 25 25 C 1.47079 * 118.23776 * 51.46441 * 13 12 11 26 26 C 1.46903 * 110.99692 * 294.29851 * 10 9 7 27 27 H 0.96995 * 119.99631 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46978 * 60.00190 * 9 7 2 29 29 H 1.08997 * 109.46756 * 300.00162 * 9 7 2 30 30 H 1.09007 * 109.49363 * 67.28772 * 11 10 9 31 31 H 1.09006 * 109.48829 * 307.21036 * 11 10 9 32 32 H 1.09007 * 109.62838 * 186.45836 * 12 11 10 33 33 H 1.08995 * 109.63343 * 65.87824 * 12 11 10 34 34 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 35 35 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 36 36 H 1.08004 * 120.00753 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.95157 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.93546 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.98393 * 180.02562 * 22 21 20 40 40 H 1.08993 * 109.62875 * 68.24376 * 25 13 12 41 41 H 1.08998 * 109.63018 * 188.83153 * 25 13 12 42 42 H 1.09000 * 109.49258 * 292.70544 * 26 10 9 43 43 H 1.09002 * 109.49243 * 52.78589 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5637 -6.0031 0.4104 13 7 3.4614 -5.9862 -0.7546 14 6 3.7117 -7.1124 -1.4515 15 8 3.1936 -8.1579 -1.1208 16 6 4.6300 -7.0710 -2.6456 17 8 4.7301 -8.3779 -3.2150 18 6 5.5258 -8.5153 -4.3088 19 6 6.1964 -7.4158 -4.8226 20 6 7.0051 -7.5578 -5.9340 21 6 7.1464 -8.7949 -6.5351 22 6 6.4796 -9.8939 -6.0261 23 6 5.6739 -9.7589 -4.9097 24 9 5.0266 -10.8338 -4.4087 25 6 4.0837 -4.7090 -1.1351 26 6 2.9766 -3.6491 -1.2505 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 0.8795 -5.1263 -0.6123 31 1 0.9160 -4.8191 1.1412 32 1 2.0631 -6.9694 0.4728 33 1 3.1394 -5.8265 1.3189 34 1 4.2295 -6.3809 -3.3883 35 1 5.6183 -6.7345 -2.3326 36 1 6.0873 -6.4490 -4.3537 37 1 7.5276 -6.7012 -6.3336 38 1 7.7788 -8.9029 -7.4039 39 1 6.5919 -10.8592 -6.4972 40 1 4.8026 -4.4104 -0.3723 41 1 4.5884 -4.8192 -2.0949 42 1 2.3147 -3.8993 -2.0796 43 1 3.4270 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:06 Heat of formation + Delta-G solvation = -71.972839 kcal Electronic energy + Delta-G solvation = -26600.596306 eV Core-core repulsion = 22561.213342 eV Total energy + Delta-G solvation = -4039.382964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.97524 -40.69582 -39.72749 -37.94546 -37.24480 -34.54378 -32.55159 -31.34491 -31.06194 -30.46371 -28.93476 -27.78413 -25.47456 -23.54465 -23.19887 -22.78519 -22.02363 -20.71344 -19.00362 -18.82481 -17.41342 -17.19955 -16.79340 -16.60939 -16.45359 -15.81956 -15.69135 -15.25721 -14.84091 -14.74336 -14.68103 -14.50760 -14.08561 -13.96280 -13.70152 -13.26527 -13.05568 -12.96133 -12.53441 -12.38290 -12.07823 -11.99614 -11.55560 -11.50149 -11.38342 -11.16231 -11.05846 -10.84879 -10.70621 -10.61856 -9.97591 -9.77661 -9.35176 -9.33975 -8.64212 -8.56227 -8.52209 -7.42752 -6.12306 -4.14919 0.73842 0.87331 2.25125 2.47858 3.19675 3.24352 3.26518 3.31744 3.34781 3.90835 4.17530 4.32639 4.37766 4.48923 4.57726 4.66841 4.74743 4.82879 4.84298 5.07140 5.12481 5.22621 5.27072 5.38810 5.52822 5.56347 5.64557 5.66015 5.74539 5.78556 5.91933 5.98615 6.19277 6.22772 6.33282 6.35051 6.52595 6.89705 7.13447 7.19726 7.34023 7.66546 7.93164 8.03640 8.06560 8.39114 8.92055 9.49930 10.98444 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.002497 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.001044 B =11212.604796 C =12358.033239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.120 3.880 13 N -0.604 5.604 14 C 0.516 3.484 15 O -0.525 6.525 16 C 0.041 3.959 17 O -0.282 6.282 18 C 0.099 3.901 19 C -0.185 4.185 20 C -0.088 4.088 21 C -0.131 4.131 22 C -0.117 4.117 23 C 0.071 3.929 24 F -0.130 7.130 25 C 0.106 3.894 26 C 0.049 3.951 27 H 0.262 0.738 28 H -0.008 1.008 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 -14.607 -11.300 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.339 5.339 14 C 0.302 3.698 15 O -0.400 6.400 16 C -0.037 4.037 17 O -0.194 6.194 18 C 0.052 3.948 19 C -0.203 4.203 20 C -0.106 4.106 21 C -0.150 4.150 22 C -0.136 4.136 23 C 0.051 3.949 24 F -0.108 7.108 25 C -0.017 4.017 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.382 -15.158 -10.591 23.426 hybrid contribution -0.270 1.056 -0.630 1.259 sum 14.112 -14.102 -11.222 22.890 Atomic orbital electron populations 1.69955 1.06113 1.26945 1.50564 1.25004 0.94868 0.99398 0.95307 0.86492 0.79809 0.83045 0.78036 1.20724 1.21220 1.19729 1.21118 0.93430 0.89830 1.50612 0.91791 1.19735 0.89974 0.87088 0.96330 1.62087 1.28195 1.02791 1.33003 1.22424 0.94919 0.90403 1.01173 1.21810 0.91590 0.99760 0.87003 1.48136 1.47134 1.08071 1.30580 1.19844 0.82273 0.83993 0.83650 1.90739 1.50889 1.29861 1.68542 1.22620 1.00970 0.84448 0.95676 1.86226 1.62657 1.30268 1.40250 1.19111 0.93407 0.93495 0.88764 1.21239 1.01182 0.97950 0.99954 1.21050 0.97100 0.97923 0.94543 1.20955 1.00896 0.92009 1.01094 1.21051 0.96862 1.00952 0.94704 1.17025 0.99519 0.81734 0.96611 1.91534 1.79589 1.52921 1.86796 1.22193 0.96494 0.82719 1.00312 1.22421 0.95015 0.98950 0.91614 0.92801 0.99049 0.94930 0.95398 0.89797 0.89196 0.90557 0.88606 0.88668 0.84282 0.84820 0.84775 0.84001 0.89978 0.90575 0.95532 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.51 -13.46 8.41 -34.44 -0.29 -13.75 16 8 H 0.06 1.64 7.13 -52.49 -0.37 1.26 16 9 C 0.19 4.75 4.72 -4.98 -0.02 4.73 16 10 N -0.54 -10.56 4.62 -235.47 -1.09 -11.65 16 11 C 0.04 0.69 5.62 -3.71 -0.02 0.67 16 12 C 0.12 1.80 6.60 -3.61 -0.02 1.77 16 13 N -0.60 -8.56 3.00 -172.18 -0.52 -9.07 16 14 C 0.52 7.65 7.78 -10.98 -0.09 7.57 16 15 O -0.52 -9.89 15.95 -14.36 -0.23 -10.12 16 16 C 0.04 0.46 3.59 36.01 0.13 0.59 16 17 O -0.28 -3.91 9.53 -39.51 -0.38 -4.28 16 18 C 0.10 1.14 6.69 -39.18 -0.26 0.87 16 19 C -0.18 -1.54 9.04 -39.45 -0.36 -1.90 16 20 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 21 C -0.13 -0.86 10.04 -39.57 -0.40 -1.26 16 22 C -0.12 -0.96 10.02 -39.54 -0.40 -1.35 16 23 C 0.07 0.81 7.31 -39.30 -0.29 0.53 16 24 F -0.13 -1.77 17.11 2.25 0.04 -1.73 16 25 C 0.11 1.32 6.54 -3.36 -0.02 1.30 16 26 C 0.05 0.82 5.47 -3.46 -0.02 0.80 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 29 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 32 H 0.09 1.36 7.06 -51.92 -0.37 0.99 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 0.86 7.19 -51.92 -0.37 0.48 16 35 H 0.10 0.78 7.51 -51.93 -0.39 0.39 16 36 H 0.14 0.87 6.30 -52.48 -0.33 0.54 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.68 6.01 -51.93 -0.31 0.36 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 1.75 6.67 -51.93 -0.35 1.41 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -33.27 358.70 -9.44 -42.71 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.84 Total: -2.81 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.55 Total: 0.99 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.87 Total: -45.75 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.61 Total: -14.41 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.27 -9.44 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.262 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds