Wall clock time and date at job start Sat Apr 11 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48505 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47464 * 299.99766 * 3 2 1 6 6 H 1.48503 * 109.46957 * 60.00032 * 3 2 1 7 7 C 1.38816 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99989 * 197.59332 * 7 2 1 9 9 N 1.36936 * 120.00196 * 17.60220 * 7 2 1 10 10 C 1.46964 * 120.59288 * 208.19956 * 9 7 2 11 11 C 1.53374 * 108.63293 * 235.24740 * 10 9 7 12 12 N 1.46964 * 108.63194 * 310.57305 * 11 10 9 13 13 C 1.34783 * 120.59296 * 235.20576 * 12 11 10 14 14 O 1.21282 * 120.00207 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99963 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47102 * 179.97438 * 15 13 12 17 17 O 1.42905 * 109.47053 * 180.02562 * 16 15 13 18 18 C 1.35893 * 117.00022 * 180.02562 * 17 16 15 19 19 C 1.38771 * 120.04094 * 359.72046 * 18 17 16 20 20 C 1.38137 * 119.99172 * 179.74978 * 19 18 17 21 21 C 1.38252 * 120.08104 * 0.53213 * 20 19 18 22 22 C 1.38470 * 120.08528 * 359.74307 * 21 20 19 23 23 F 1.35098 * 119.99917 * 180.02562 * 22 21 20 24 24 C 1.38393 * 120.00263 * 359.97438 * 22 21 20 25 25 C 1.46966 * 118.81364 * 55.48203 * 12 11 10 26 26 C 1.46964 * 120.59451 * 28.21553 * 9 7 2 27 27 H 0.96995 * 120.00062 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.61254 * 115.49980 * 10 9 7 29 29 H 1.08998 * 109.75183 * 355.06984 * 10 9 7 30 30 H 1.09001 * 109.60409 * 190.83409 * 11 10 9 31 31 H 1.08992 * 109.75257 * 70.40467 * 11 10 9 32 32 H 1.09004 * 109.47185 * 300.00029 * 15 13 12 33 33 H 1.09004 * 109.47062 * 59.99792 * 15 13 12 34 34 H 1.08994 * 109.47261 * 300.00253 * 16 15 13 35 35 H 1.08999 * 109.46831 * 60.00725 * 16 15 13 36 36 H 1.07994 * 120.00533 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.96058 * 180.27743 * 20 19 18 38 38 H 1.08001 * 119.95862 * 179.76610 * 21 20 19 39 39 H 1.08006 * 120.03398 * 180.02562 * 24 22 21 40 40 H 1.08996 * 109.60690 * 64.26035 * 25 12 11 41 41 H 1.08998 * 109.61170 * 184.77558 * 25 12 11 42 42 H 1.08996 * 109.61018 * 244.49751 * 26 9 7 43 43 H 1.09004 * 109.60979 * 4.84308 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0523 -1.2240 0.2833 9 7 1.3736 -2.3605 -0.3576 10 6 1.8122 -3.6537 0.1855 11 6 2.1177 -4.5981 -0.9838 12 7 0.9838 -4.5702 -1.9183 13 6 0.3577 -5.7104 -2.2714 14 8 0.7287 -6.7718 -1.8167 15 6 -0.8033 -5.6664 -3.2313 16 6 -1.3278 -7.0849 -3.4625 17 8 -2.4284 -7.0432 -4.3731 18 6 -3.0145 -8.2284 -4.6872 19 6 -2.5362 -9.4080 -4.1345 20 6 -3.1360 -10.6115 -4.4504 21 6 -4.2059 -10.6440 -5.3254 22 6 -4.6823 -9.4695 -5.8832 23 9 -5.7282 -9.5032 -6.7377 24 6 -4.0877 -8.2612 -5.5647 25 6 0.5487 -3.2776 -2.4658 26 6 0.2397 -2.3327 -1.2921 27 1 -0.4850 0.8400 -0.0004 28 1 1.0204 -4.0791 0.8021 29 1 2.7101 -3.5149 0.7877 30 1 2.2574 -5.6118 -0.6083 31 1 3.0220 -4.2697 -1.4959 32 1 -1.5977 -5.0486 -2.8125 33 1 -0.4745 -5.2418 -4.1799 34 1 -0.5333 -7.7024 -3.8814 35 1 -1.6565 -7.5098 -2.5141 36 1 -1.6979 -9.3846 -3.4541 37 1 -2.7662 -11.5288 -4.0165 38 1 -4.6710 -11.5865 -5.5740 39 1 -4.4591 -7.3447 -5.9991 40 1 1.3434 -2.8545 -3.0802 41 1 -0.3479 -3.4190 -3.0694 42 1 -0.6641 -2.6640 -0.7808 43 1 0.0980 -1.3183 -1.6652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610397173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:26 Heat of formation + Delta-G solvation = -63.488774 kcal Electronic energy + Delta-G solvation = -26294.672906 eV Core-core repulsion = 22255.657838 eV Total energy + Delta-G solvation = -4039.015068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.21016 -40.47025 -39.69176 -37.60168 -36.87612 -33.97043 -32.59810 -31.40408 -30.84497 -30.21213 -29.75260 -27.12031 -24.99839 -23.60412 -23.20984 -22.81973 -21.96035 -20.45590 -19.03422 -18.52998 -17.27215 -16.86869 -16.62148 -16.48136 -16.28507 -15.93395 -15.83973 -15.38693 -15.00381 -14.81245 -14.54154 -14.06758 -13.75515 -13.65978 -13.38371 -13.20910 -13.15459 -13.02827 -12.45795 -12.40923 -11.97553 -11.89738 -11.66515 -11.42110 -11.17748 -10.95990 -10.90493 -10.80545 -10.55416 -10.31525 -10.10899 -9.91409 -9.55356 -9.21076 -8.67630 -8.60760 -8.36297 -6.79340 -5.92534 -3.36865 0.80732 0.97027 2.59209 2.80090 3.27271 3.29279 3.37968 3.39630 3.46524 4.04580 4.38855 4.39363 4.61719 4.66430 4.68616 4.79719 4.84708 4.99541 5.06148 5.16653 5.25171 5.31689 5.57127 5.59525 5.64059 5.70722 5.75353 5.78379 5.85381 5.91083 6.01086 6.04086 6.10976 6.24960 6.33791 6.39741 6.69780 6.82546 7.05028 7.10718 7.37592 7.66180 7.77018 8.28849 8.36557 9.05079 9.67531 10.24117 11.15397 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.002161 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.257312 B =12953.785647 C =13756.338486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.592 5.592 13 C 0.516 3.484 14 O -0.563 6.563 15 C -0.140 4.140 16 C 0.076 3.924 17 O -0.311 6.311 18 C 0.167 3.833 19 C -0.218 4.218 20 C -0.050 4.050 21 C -0.196 4.196 22 C 0.136 3.864 23 F -0.136 7.136 24 C -0.193 4.193 25 C 0.076 3.924 26 C 0.156 3.844 27 H 0.255 0.745 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 -17.002 -10.671 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.324 5.324 13 C 0.304 3.696 14 O -0.443 6.443 15 C -0.180 4.180 16 C 0.001 3.999 17 O -0.225 6.225 18 C 0.120 3.880 19 C -0.237 4.237 20 C -0.068 4.068 21 C -0.215 4.215 22 C 0.117 3.883 23 F -0.114 7.114 24 C -0.212 4.212 25 C -0.048 4.048 26 C 0.030 3.970 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.742 -17.161 -10.493 20.918 hybrid contribution 0.250 0.926 -0.036 0.960 sum -5.492 -16.235 -10.529 20.114 Atomic orbital electron populations 1.70017 1.05318 1.25709 1.53556 1.25079 0.95316 0.98605 1.00570 0.86199 0.79395 0.83660 0.77369 1.20183 1.21426 1.21651 1.19244 0.92906 0.84634 1.41733 0.91379 1.44000 1.36709 1.01603 1.49109 1.21296 0.98516 0.87024 0.92728 1.22238 0.87585 1.01178 0.91852 1.48048 1.32771 1.06768 1.44801 1.20116 0.83652 0.83852 0.82007 1.90654 1.67217 1.29539 1.56917 1.21483 0.98106 0.97297 1.01071 1.22537 0.87009 0.97754 0.92576 1.86003 1.46689 1.27871 1.61889 1.18590 0.91543 0.84931 0.92909 1.21475 1.04393 0.92219 1.05630 1.20811 0.93478 0.97814 0.94698 1.21043 1.00783 0.97437 1.02263 1.17275 0.86212 0.93840 0.90988 1.91514 1.54802 1.97288 1.67827 1.20266 0.99025 0.98249 1.03664 1.22849 0.99326 0.83755 0.98839 1.21275 0.89297 0.98709 0.87753 0.93464 0.95839 0.91432 0.89924 0.91808 0.87486 0.87836 0.90835 0.90713 0.84296 0.84615 0.84686 0.83836 0.91507 0.90757 0.95733 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 11.20 55.49 0.62 -24.21 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 20.67 29.59 -169.99 -5.03 15.64 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.63 9.58 -15.06 -0.14 -6.77 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -13.94 2.97 -171.76 -0.51 -14.45 16 10 C 0.13 2.65 6.67 -3.60 -0.02 2.62 16 11 C 0.10 1.67 6.59 -3.60 -0.02 1.64 16 12 N -0.59 -10.00 2.94 -172.21 -0.51 -10.51 16 13 C 0.52 8.13 7.70 -10.98 -0.08 8.04 16 14 O -0.56 -10.18 15.39 5.56 0.09 -10.09 16 15 C -0.14 -1.68 4.41 -27.88 -0.12 -1.81 16 16 C 0.08 0.87 4.03 37.16 0.15 1.02 16 17 O -0.31 -3.63 10.14 -19.41 -0.20 -3.83 16 18 C 0.17 1.82 6.68 -39.23 -0.26 1.56 16 19 C -0.22 -2.09 9.04 -39.42 -0.36 -2.45 16 20 C -0.05 -0.40 10.04 -39.61 -0.40 -0.80 16 21 C -0.20 -1.66 10.02 -39.49 -0.40 -2.05 16 22 C 0.14 1.36 7.30 -39.44 -0.29 1.07 16 23 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 24 C -0.19 -2.00 9.97 -39.37 -0.39 -2.40 16 25 C 0.08 1.27 6.54 -3.36 -0.02 1.25 16 26 C 0.16 3.39 5.54 -3.37 -0.02 3.37 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 30 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.11 1.24 7.73 -51.93 -0.40 0.84 16 33 H 0.10 1.09 7.90 -51.93 -0.41 0.68 16 34 H 0.07 0.81 7.61 -51.93 -0.40 0.42 16 35 H 0.07 0.87 7.63 -51.93 -0.40 0.47 16 36 H 0.14 1.23 6.30 -52.49 -0.33 0.90 16 37 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.01 5.91 -51.93 -0.31 0.70 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 2.44 5.98 -51.93 -0.31 2.13 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -29.92 356.74 -8.42 -38.34 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.84 Total: 0.79 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.47 Total: 4.30 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.39 Total: -49.16 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.11 Total: -13.92 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.92 -8.42 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.149 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds