Wall clock time and date at job start Sat Apr 11 2020 00:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48505 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47464 * 299.99766 * 3 2 1 6 6 H 1.48503 * 109.46957 * 60.00032 * 3 2 1 7 7 C 1.38816 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99989 * 197.59332 * 7 2 1 9 9 N 1.36936 * 120.00196 * 17.60220 * 7 2 1 10 10 C 1.46964 * 120.59288 * 208.19956 * 9 7 2 11 11 C 1.53374 * 108.63293 * 235.24740 * 10 9 7 12 12 N 1.46964 * 108.63194 * 310.57305 * 11 10 9 13 13 C 1.34783 * 120.59296 * 235.20576 * 12 11 10 14 14 O 1.21282 * 120.00207 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99963 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47102 * 179.97438 * 15 13 12 17 17 O 1.42905 * 109.47053 * 180.02562 * 16 15 13 18 18 C 1.35893 * 117.00022 * 180.02562 * 17 16 15 19 19 C 1.38771 * 120.04094 * 359.72046 * 18 17 16 20 20 C 1.38137 * 119.99172 * 179.74978 * 19 18 17 21 21 C 1.38252 * 120.08104 * 0.53213 * 20 19 18 22 22 C 1.38470 * 120.08528 * 359.74307 * 21 20 19 23 23 F 1.35098 * 119.99917 * 180.02562 * 22 21 20 24 24 C 1.38393 * 120.00263 * 359.97438 * 22 21 20 25 25 C 1.46966 * 118.81364 * 55.48203 * 12 11 10 26 26 C 1.46964 * 120.59451 * 28.21553 * 9 7 2 27 27 H 0.96995 * 120.00062 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.61254 * 115.49980 * 10 9 7 29 29 H 1.08998 * 109.75183 * 355.06984 * 10 9 7 30 30 H 1.09001 * 109.60409 * 190.83409 * 11 10 9 31 31 H 1.08992 * 109.75257 * 70.40467 * 11 10 9 32 32 H 1.09004 * 109.47185 * 300.00029 * 15 13 12 33 33 H 1.09004 * 109.47062 * 59.99792 * 15 13 12 34 34 H 1.08994 * 109.47261 * 300.00253 * 16 15 13 35 35 H 1.08999 * 109.46831 * 60.00725 * 16 15 13 36 36 H 1.07994 * 120.00533 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.96058 * 180.27743 * 20 19 18 38 38 H 1.08001 * 119.95862 * 179.76610 * 21 20 19 39 39 H 1.08006 * 120.03398 * 180.02562 * 24 22 21 40 40 H 1.08996 * 109.60690 * 64.26035 * 25 12 11 41 41 H 1.08998 * 109.61170 * 184.77558 * 25 12 11 42 42 H 1.08996 * 109.61018 * 244.49751 * 26 9 7 43 43 H 1.09004 * 109.60979 * 4.84308 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0523 -1.2240 0.2833 9 7 1.3736 -2.3605 -0.3576 10 6 1.8122 -3.6537 0.1855 11 6 2.1177 -4.5981 -0.9838 12 7 0.9838 -4.5702 -1.9183 13 6 0.3577 -5.7104 -2.2714 14 8 0.7287 -6.7718 -1.8167 15 6 -0.8033 -5.6664 -3.2313 16 6 -1.3278 -7.0849 -3.4625 17 8 -2.4284 -7.0432 -4.3731 18 6 -3.0145 -8.2284 -4.6872 19 6 -2.5362 -9.4080 -4.1345 20 6 -3.1360 -10.6115 -4.4504 21 6 -4.2059 -10.6440 -5.3254 22 6 -4.6823 -9.4695 -5.8832 23 9 -5.7282 -9.5032 -6.7377 24 6 -4.0877 -8.2612 -5.5647 25 6 0.5487 -3.2776 -2.4658 26 6 0.2397 -2.3327 -1.2921 27 1 -0.4850 0.8400 -0.0004 28 1 1.0204 -4.0791 0.8021 29 1 2.7101 -3.5149 0.7877 30 1 2.2574 -5.6118 -0.6083 31 1 3.0220 -4.2697 -1.4959 32 1 -1.5977 -5.0486 -2.8125 33 1 -0.4745 -5.2418 -4.1799 34 1 -0.5333 -7.7024 -3.8814 35 1 -1.6565 -7.5098 -2.5141 36 1 -1.6979 -9.3846 -3.4541 37 1 -2.7662 -11.5288 -4.0165 38 1 -4.6710 -11.5865 -5.5740 39 1 -4.4591 -7.3447 -5.9991 40 1 1.3434 -2.8545 -3.0802 41 1 -0.3479 -3.4190 -3.0694 42 1 -0.6641 -2.6640 -0.7808 43 1 0.0980 -1.3183 -1.6652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610397173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:25 Heat of formation + Delta-G solvation = -79.775687 kcal Electronic energy + Delta-G solvation = -26295.379159 eV Core-core repulsion = 22255.657838 eV Total energy + Delta-G solvation = -4039.721321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.97540 -41.40502 -40.85683 -38.61146 -38.19219 -35.62642 -33.77712 -32.89545 -31.90147 -31.50689 -30.57323 -28.75174 -26.21941 -25.15697 -24.31039 -23.89473 -22.90640 -21.91726 -20.14279 -19.72380 -18.66491 -17.88615 -17.58200 -17.47899 -17.18508 -17.07874 -16.68345 -16.65553 -16.50702 -16.14529 -15.51187 -15.39832 -15.22539 -15.00716 -14.73266 -14.51933 -14.42516 -13.83310 -13.64366 -13.42061 -13.26303 -13.04208 -12.78898 -12.72396 -12.63064 -12.47471 -12.20687 -12.02701 -12.01010 -11.83510 -11.78358 -11.65884 -10.90559 -10.60018 -9.93557 -9.85290 -9.35317 -8.66463 -7.89528 -5.37161 0.08522 0.25960 1.47306 1.50984 1.54744 1.60396 1.64695 2.28380 2.51660 2.56246 3.25411 3.30494 3.52367 3.59591 3.70228 3.86526 3.90572 3.97079 4.08281 4.22122 4.23771 4.25326 4.38360 4.39239 4.40715 4.58441 4.64081 4.69407 4.72592 4.78368 4.82280 4.98174 5.06510 5.07375 5.20643 5.23372 5.33178 5.52451 5.60608 5.65895 5.69001 6.25281 6.35439 6.44838 7.08124 7.11016 7.78548 8.31344 9.15745 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.002161 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.257312 B =12953.785647 C =13756.338486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.131 3.869 11 C 0.106 3.894 12 N -0.600 5.600 13 C 0.517 3.483 14 O -0.585 6.585 15 C -0.134 4.134 16 C 0.082 3.918 17 O -0.320 6.320 18 C 0.146 3.854 19 C -0.223 4.223 20 C -0.046 4.046 21 C -0.191 4.191 22 C 0.122 3.878 23 F -0.142 7.142 24 C -0.203 4.203 25 C 0.094 3.906 26 C 0.160 3.840 27 H 0.252 0.748 28 H 0.009 0.991 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.001 0.999 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -18.362 -11.793 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.018 4.018 12 N -0.331 5.331 13 C 0.307 3.693 14 O -0.467 6.467 15 C -0.173 4.173 16 C 0.007 3.993 17 O -0.234 6.234 18 C 0.101 3.899 19 C -0.242 4.242 20 C -0.064 4.064 21 C -0.210 4.210 22 C 0.103 3.897 23 F -0.120 7.120 24 C -0.223 4.223 25 C -0.030 4.030 26 C 0.033 3.967 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.019 0.981 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.301 -18.551 -11.630 22.528 hybrid contribution 0.085 1.242 0.363 1.297 sum -5.215 -17.309 -11.267 21.301 Atomic orbital electron populations 1.70157 1.06599 1.26030 1.55067 1.25776 0.96013 1.01429 1.00991 0.85219 0.78634 0.79855 0.76757 1.19190 1.21349 1.22335 1.19536 0.93118 0.85715 1.40923 0.91349 1.44279 1.36948 1.02104 1.49993 1.21365 0.98073 0.86227 0.93862 1.22022 0.88252 1.00497 0.91045 1.48104 1.32864 1.07197 1.44985 1.20655 0.83837 0.82936 0.81862 1.90645 1.67943 1.30274 1.57828 1.21452 0.96681 0.98151 1.01014 1.22421 0.87148 0.97262 0.92469 1.85960 1.46829 1.28535 1.62046 1.18760 0.92166 0.85168 0.93855 1.21659 1.04603 0.92390 1.05536 1.21171 0.92802 0.98407 0.93995 1.21361 1.00470 0.97774 1.01387 1.17473 0.86417 0.94370 0.91464 1.91498 1.55098 1.97329 1.68093 1.20365 0.99251 0.98726 1.03943 1.22615 1.01137 0.82535 0.96729 1.21135 0.88063 0.98550 0.88916 0.93891 0.97297 0.90961 0.89315 0.90990 0.86734 0.85597 0.90525 0.91222 0.83792 0.81621 0.82438 0.83751 0.90889 0.87188 0.98095 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.36 11.20 21.65 0.24 -52.12 16 2 C -0.05 -2.46 4.90 84.86 0.42 -2.04 16 3 Si 0.97 42.74 29.59 68.60 2.03 44.77 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -13.68 9.58 84.03 0.80 -12.87 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -28.88 2.97 -697.34 -2.07 -30.95 16 10 C 0.13 5.27 6.67 86.42 0.58 5.85 16 11 C 0.11 3.57 6.59 86.42 0.57 4.14 16 12 N -0.60 -19.26 2.94 -817.15 -2.40 -21.66 16 13 C 0.52 15.32 7.70 87.66 0.67 15.99 16 14 O -0.59 -20.25 15.39 -3.04 -0.05 -20.29 16 15 C -0.13 -2.91 4.41 29.85 0.13 -2.77 16 16 C 0.08 1.74 4.03 71.98 0.29 2.03 16 17 O -0.32 -7.07 10.14 -92.35 -0.94 -8.01 16 18 C 0.15 3.05 6.68 22.50 0.15 3.20 16 19 C -0.22 -3.89 9.04 22.37 0.20 -3.69 16 20 C -0.05 -0.62 10.04 22.25 0.22 -0.40 16 21 C -0.19 -2.79 10.02 22.33 0.22 -2.57 16 22 C 0.12 2.29 7.30 22.36 0.16 2.46 16 23 F -0.14 -2.83 17.27 44.97 0.78 -2.06 16 24 C -0.20 -4.11 9.97 22.41 0.22 -3.89 16 25 C 0.09 2.97 6.54 86.57 0.57 3.53 16 26 C 0.16 6.97 5.54 86.57 0.48 7.45 16 27 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 2.77 7.94 -2.39 -0.02 2.75 16 30 H 0.09 2.90 6.99 -2.39 -0.02 2.88 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.11 2.39 7.73 -2.39 -0.02 2.37 16 33 H 0.13 2.22 7.90 -2.38 -0.02 2.20 16 34 H 0.08 1.56 7.61 -2.39 -0.02 1.55 16 35 H 0.07 1.53 7.63 -2.39 -0.02 1.51 16 36 H 0.14 2.31 6.30 -2.91 -0.02 2.30 16 37 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.11 2.69 5.91 -2.39 -0.01 2.68 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.08 3.69 5.98 -2.39 -0.01 3.67 16 Total: -1.00 -64.59 356.74 4.31 -60.28 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.02 Total: 13.63 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.69 Total: 16.41 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -4.23 Total: -104.73 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.98 Total: -28.30 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -64.59 4.31 -60.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.497 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds