Wall clock time and date at job start Sat Apr 11 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00044 * 2 1 4 4 C 1.52998 * 109.47455 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47146 * 64.99617 * 4 3 2 6 6 C 1.46499 * 119.99816 * 270.00391 * 5 4 3 7 7 C 1.50696 * 109.47061 * 269.99629 * 6 5 4 8 8 H 1.07997 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99931 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99986 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47035 * 89.99945 * 11 9 7 13 13 H 1.48507 * 109.46878 * 209.99330 * 11 9 7 14 14 H 1.48496 * 109.47120 * 329.99398 * 11 9 7 15 15 C 1.34774 * 120.00115 * 90.00085 * 5 4 3 16 16 S 1.71203 * 119.99991 * 180.02562 * 15 5 4 17 17 N 1.34778 * 119.99982 * 0.02562 * 15 5 4 18 18 C 1.39885 * 120.00154 * 185.52306 * 17 15 5 19 19 C 1.38913 * 120.06899 * 41.86372 * 18 17 15 20 20 C 1.38092 * 119.92290 * 180.23211 * 19 18 17 21 21 C 1.38298 * 120.07250 * 359.51586 * 20 19 18 22 22 C 1.50704 * 119.92576 * 180.20740 * 21 20 19 23 23 C 1.38257 * 120.14763 * 0.46371 * 21 20 19 24 24 C 1.50705 * 119.96783 * 179.76480 * 23 21 20 25 25 C 1.38139 * 120.07017 * 359.79341 * 23 21 20 26 26 H 1.09001 * 109.46959 * 60.00548 * 1 2 3 27 27 H 1.08999 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47287 * 300.00660 * 1 2 3 29 29 H 1.09000 * 109.47458 * 59.99075 * 3 2 1 30 30 H 1.09002 * 109.46947 * 299.99440 * 3 2 1 31 31 H 1.09001 * 109.46969 * 305.00167 * 4 3 2 32 32 H 1.09001 * 109.47432 * 184.99475 * 4 3 2 33 33 H 1.09004 * 109.47502 * 29.99714 * 6 5 4 34 34 H 1.09001 * 109.47088 * 150.00000 * 6 5 4 35 35 H 0.96996 * 119.99802 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99665 * 5.52102 * 17 15 5 37 37 H 1.07996 * 120.03481 * 359.95808 * 19 18 17 38 38 H 1.07999 * 119.95879 * 179.75201 * 20 19 18 39 39 H 1.08994 * 109.47243 * 270.25571 * 22 21 20 40 40 H 1.08997 * 109.47283 * 30.25961 * 22 21 20 41 41 H 1.09001 * 109.46871 * 150.25227 * 22 21 20 42 42 H 1.08994 * 109.47249 * 270.02230 * 24 23 21 43 43 H 1.08991 * 109.46721 * 30.02460 * 24 23 21 44 44 H 1.08998 * 109.46731 * 150.02229 * 24 23 21 45 45 H 1.07999 * 120.03791 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2982 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8610 -2.6293 -0.9470 10 7 7.0791 -2.9832 -0.5992 11 14 4.6183 -3.9299 -1.4504 12 1 4.7048 -4.1564 -2.9155 13 1 4.9119 -5.1980 -0.7353 14 1 3.2506 -3.4695 -1.1005 15 6 4.2634 1.3327 -2.3200 16 16 4.7784 0.6072 -3.7827 17 7 4.1446 2.6728 -2.2377 18 6 4.3296 3.4626 -3.3773 19 6 3.7988 3.0607 -4.5965 20 6 3.9873 3.8404 -5.7205 21 6 4.6951 5.0252 -5.6313 22 6 4.8948 5.8758 -6.8592 23 6 5.2243 5.4283 -4.4194 24 6 5.9994 6.7176 -4.3279 25 6 5.0439 4.6504 -3.2922 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6885 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1766 0.0901 33 1 3.3858 -1.3633 -0.6712 34 1 3.9139 -1.2124 -2.3643 35 1 7.3317 -3.9197 -0.6030 36 1 3.9308 3.0894 -1.3883 37 1 3.2432 2.1372 -4.6660 38 1 3.5783 3.5264 -6.6695 39 1 5.8114 5.5734 -7.3656 40 1 4.0478 5.7462 -7.5328 41 1 4.9697 6.9233 -6.5672 42 1 7.0547 6.5212 -4.5168 43 1 5.6223 7.4215 -5.0697 44 1 5.8815 7.1423 -3.3310 45 1 5.4578 4.9656 -2.3458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728449472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:03 Heat of formation + Delta-G solvation = 10.443761 kcal Electronic energy + Delta-G solvation = -25154.808302 eV Core-core repulsion = 21685.212366 eV Total energy + Delta-G solvation = -3469.595936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16789 -38.92482 -37.53908 -35.65737 -32.71456 -32.30824 -31.57225 -30.59166 -28.21878 -27.29583 -26.46059 -25.73195 -24.14815 -22.80507 -22.21886 -20.80240 -20.27743 -18.13400 -17.38068 -16.98675 -16.47189 -15.95083 -15.62279 -15.38785 -15.19966 -15.05808 -14.36471 -14.23811 -14.05529 -13.62469 -13.40454 -12.97292 -12.82901 -12.77043 -12.66527 -12.32647 -12.22664 -11.98293 -11.97461 -11.76506 -11.55704 -11.22014 -11.17397 -10.95387 -10.83969 -10.51901 -10.36676 -10.15630 -9.76663 -9.56144 -8.93434 -8.61700 -8.52335 -7.80473 -7.01616 -6.28478 -6.03407 -4.02093 1.28540 1.60289 2.09577 2.56219 3.19695 3.37403 3.42909 3.47055 3.59738 3.65167 3.91748 4.46796 4.84239 4.85582 4.92840 4.95461 5.03737 5.11764 5.13347 5.14529 5.25935 5.27383 5.31993 5.35645 5.45784 5.54241 5.60914 5.66287 5.75327 5.75650 5.79999 5.90685 5.98663 6.09945 6.33224 6.47879 6.61025 6.73251 6.80653 6.92138 7.06192 7.13297 7.20631 7.44321 7.59182 7.78061 8.47819 8.95167 9.54956 11.09726 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.003995 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.622768 B = 7006.266380 C = 8054.311873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.045 3.955 4 C 0.091 3.909 5 N -0.520 5.520 6 C 0.212 3.788 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.080 3.920 10 N -0.896 5.896 11 Si 0.872 3.128 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.264 1.264 15 C 0.553 3.447 16 S -0.624 6.624 17 N -0.653 5.653 18 C 0.145 3.855 19 C -0.072 4.072 20 C -0.111 4.111 21 C -0.093 4.093 22 C -0.113 4.113 23 C -0.087 4.087 24 C -0.111 4.111 25 C -0.129 4.129 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.264 0.736 36 H 0.397 0.603 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 19.088 -1.850 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.033 4.033 4 C -0.036 4.036 5 N -0.223 5.223 6 C 0.092 3.908 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.123 4.123 10 N -0.534 5.534 11 Si 0.699 3.301 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.188 1.188 15 C 0.196 3.804 16 S -0.490 6.490 17 N -0.283 5.283 18 C 0.051 3.949 19 C -0.095 4.095 20 C -0.131 4.131 21 C -0.094 4.094 22 C -0.170 4.170 23 C -0.089 4.089 24 C -0.168 4.168 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.236 0.764 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.426 18.082 -2.644 21.552 hybrid contribution -0.868 -0.095 1.159 1.451 sum -12.294 17.987 -1.485 21.837 Atomic orbital electron populations 1.22743 0.81279 1.02940 0.99526 1.88055 1.19411 1.26512 1.95248 1.23012 0.93887 0.86001 1.00425 1.21908 0.92388 0.99642 0.89657 1.47465 1.57412 1.09914 1.07523 1.20356 0.98856 0.70988 1.00580 1.21025 0.95346 0.93693 1.45967 0.90977 1.24696 0.95121 0.98130 0.94314 1.69884 1.18083 1.17300 1.48168 0.86898 0.82170 0.81338 0.79700 1.19540 1.21281 1.18815 1.22320 0.82241 0.83128 0.92728 1.93134 1.65680 1.75823 1.14316 1.42317 1.71062 1.03592 1.11329 1.17317 0.99153 0.91522 0.86858 1.21381 0.98193 0.98658 0.91223 1.20778 1.00299 0.93856 0.98207 1.19694 0.99075 0.96014 0.94594 1.20814 1.02126 0.98847 0.95207 1.19334 1.00018 0.97157 0.92365 1.20790 0.99584 0.94196 1.02231 1.20661 0.99714 0.95746 0.98878 0.94281 0.89484 0.94270 0.91977 0.93348 0.86925 0.89814 0.93282 0.91589 0.92564 0.76418 0.83985 0.85977 0.91339 0.91867 0.91533 0.91323 0.91350 0.92021 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.54 9.53 -35.23 -0.34 -5.88 16 3 C 0.05 0.54 6.28 37.16 0.23 0.77 16 4 C 0.09 1.29 5.63 -4.04 -0.02 1.27 16 5 N -0.52 -10.17 2.42 -177.08 -0.43 -10.60 16 6 C 0.21 5.09 3.81 -5.20 -0.02 5.07 16 7 C -0.52 -14.81 9.94 -34.44 -0.34 -15.15 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 10 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 11 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.55 10.91 7.46 -86.92 -0.65 10.27 16 16 S -0.62 -15.15 24.45 -107.50 -2.63 -17.77 16 17 N -0.65 -9.95 5.20 -11.40 -0.06 -10.01 16 18 C 0.15 2.22 5.91 -83.70 -0.49 1.72 16 19 C -0.07 -1.14 7.86 -39.38 -0.31 -1.45 16 20 C -0.11 -1.52 9.69 -39.61 -0.38 -1.90 16 21 C -0.09 -1.13 5.88 -104.59 -0.62 -1.75 16 22 C -0.11 -1.02 9.60 36.01 0.35 -0.68 16 23 C -0.09 -1.05 5.88 -104.65 -0.62 -1.67 16 24 C -0.11 -0.99 9.60 36.01 0.35 -0.65 16 25 C -0.13 -1.70 9.62 -39.39 -0.38 -2.07 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.71 8.07 -51.93 -0.42 1.29 16 32 H 0.08 0.90 6.29 -51.93 -0.33 0.58 16 33 H 0.05 1.17 6.17 -51.93 -0.32 0.85 16 34 H 0.07 1.73 6.01 -51.93 -0.31 1.42 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.40 4.62 6.52 -40.82 -0.27 4.36 16 37 H 0.14 2.52 6.26 -49.84 -0.31 2.21 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.07 0.50 5.94 -51.93 -0.31 0.19 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.51 5.94 -51.93 -0.31 0.20 16 44 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -36.25 374.26 -10.41 -46.66 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.81 Total: 4.26 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.89 Total: -2.51 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.29 Total: -47.70 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.34 Total: -5.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Atomic # 16 Polarization: -15.15 SS G_CDS: -2.63 Total: -17.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.25 -10.41 -46.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.101 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds