Wall clock time and date at job start Sat Apr 11 2020 00:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00044 * 2 1 4 4 C 1.52998 * 109.47455 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47146 * 64.99617 * 4 3 2 6 6 C 1.46499 * 119.99816 * 270.00391 * 5 4 3 7 7 C 1.50696 * 109.47061 * 269.99629 * 6 5 4 8 8 H 1.07997 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99931 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99986 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47035 * 89.99945 * 11 9 7 13 13 H 1.48507 * 109.46878 * 209.99330 * 11 9 7 14 14 H 1.48496 * 109.47120 * 329.99398 * 11 9 7 15 15 C 1.34774 * 120.00115 * 90.00085 * 5 4 3 16 16 S 1.71203 * 119.99991 * 180.02562 * 15 5 4 17 17 N 1.34778 * 119.99982 * 0.02562 * 15 5 4 18 18 C 1.39885 * 120.00154 * 185.52306 * 17 15 5 19 19 C 1.38913 * 120.06899 * 41.86372 * 18 17 15 20 20 C 1.38092 * 119.92290 * 180.23211 * 19 18 17 21 21 C 1.38298 * 120.07250 * 359.51586 * 20 19 18 22 22 C 1.50704 * 119.92576 * 180.20740 * 21 20 19 23 23 C 1.38257 * 120.14763 * 0.46371 * 21 20 19 24 24 C 1.50705 * 119.96783 * 179.76480 * 23 21 20 25 25 C 1.38139 * 120.07017 * 359.79341 * 23 21 20 26 26 H 1.09001 * 109.46959 * 60.00548 * 1 2 3 27 27 H 1.08999 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47287 * 300.00660 * 1 2 3 29 29 H 1.09000 * 109.47458 * 59.99075 * 3 2 1 30 30 H 1.09002 * 109.46947 * 299.99440 * 3 2 1 31 31 H 1.09001 * 109.46969 * 305.00167 * 4 3 2 32 32 H 1.09001 * 109.47432 * 184.99475 * 4 3 2 33 33 H 1.09004 * 109.47502 * 29.99714 * 6 5 4 34 34 H 1.09001 * 109.47088 * 150.00000 * 6 5 4 35 35 H 0.96996 * 119.99802 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99665 * 5.52102 * 17 15 5 37 37 H 1.07996 * 120.03481 * 359.95808 * 19 18 17 38 38 H 1.07999 * 119.95879 * 179.75201 * 20 19 18 39 39 H 1.08994 * 109.47243 * 270.25571 * 22 21 20 40 40 H 1.08997 * 109.47283 * 30.25961 * 22 21 20 41 41 H 1.09001 * 109.46871 * 150.25227 * 22 21 20 42 42 H 1.08994 * 109.47249 * 270.02230 * 24 23 21 43 43 H 1.08991 * 109.46721 * 30.02460 * 24 23 21 44 44 H 1.08998 * 109.46731 * 150.02229 * 24 23 21 45 45 H 1.07999 * 120.03791 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2982 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8610 -2.6293 -0.9470 10 7 7.0791 -2.9832 -0.5992 11 14 4.6183 -3.9299 -1.4504 12 1 4.7048 -4.1564 -2.9155 13 1 4.9119 -5.1980 -0.7353 14 1 3.2506 -3.4695 -1.1005 15 6 4.2634 1.3327 -2.3200 16 16 4.7784 0.6072 -3.7827 17 7 4.1446 2.6728 -2.2377 18 6 4.3296 3.4626 -3.3773 19 6 3.7988 3.0607 -4.5965 20 6 3.9873 3.8404 -5.7205 21 6 4.6951 5.0252 -5.6313 22 6 4.8948 5.8758 -6.8592 23 6 5.2243 5.4283 -4.4194 24 6 5.9994 6.7176 -4.3279 25 6 5.0439 4.6504 -3.2922 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6885 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1766 0.0901 33 1 3.3858 -1.3633 -0.6712 34 1 3.9139 -1.2124 -2.3643 35 1 7.3317 -3.9197 -0.6030 36 1 3.9308 3.0894 -1.3883 37 1 3.2432 2.1372 -4.6660 38 1 3.5783 3.5264 -6.6695 39 1 5.8114 5.5734 -7.3656 40 1 4.0478 5.7462 -7.5328 41 1 4.9697 6.9233 -6.5672 42 1 7.0547 6.5212 -4.5168 43 1 5.6223 7.4215 -5.0697 44 1 5.8815 7.1423 -3.3310 45 1 5.4578 4.9656 -2.3458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728449472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:02 Heat of formation + Delta-G solvation = -12.212220 kcal Electronic energy + Delta-G solvation = -25155.790739 eV Core-core repulsion = 21685.212366 eV Total energy + Delta-G solvation = -3470.578373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43183 -40.12478 -38.59591 -37.00885 -34.77031 -33.36765 -32.63719 -31.95147 -29.87462 -28.31603 -27.38278 -26.82077 -25.43073 -24.52616 -23.26738 -22.21233 -21.48825 -19.48439 -19.13426 -18.74251 -17.49581 -17.05324 -16.88273 -16.75132 -16.34740 -16.26167 -15.84162 -15.61330 -15.17398 -14.77090 -14.68617 -14.46400 -13.97743 -13.96127 -13.69029 -13.50616 -13.41038 -13.26848 -13.01143 -12.92610 -12.73584 -12.60265 -12.46820 -12.20769 -12.06733 -12.02872 -11.98150 -11.81695 -11.73287 -10.80047 -10.68810 -10.37379 -9.68470 -9.06258 -8.84008 -8.31215 -8.06713 -6.33672 0.01703 0.54381 0.66668 1.03118 1.32803 1.40401 1.45464 1.63398 2.25731 2.33617 2.74049 2.85186 3.06257 3.82146 3.88098 3.93170 4.01854 4.08125 4.17474 4.26420 4.34996 4.40602 4.44879 4.45912 4.52372 4.65024 4.74882 4.80145 4.83240 4.85474 4.93676 4.95721 4.99484 5.04313 5.12145 5.23668 5.35291 5.41000 5.45028 5.56075 5.70437 5.78522 5.81583 6.14012 6.19306 6.23876 6.39868 6.63315 7.27043 8.85831 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.003995 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.622768 B = 7006.266380 C = 8054.311873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.050 3.950 4 C 0.081 3.919 5 N -0.524 5.524 6 C 0.231 3.769 7 C -0.517 4.517 8 H 0.030 0.970 9 C 0.022 3.978 10 N -0.943 5.943 11 Si 0.937 3.063 12 H -0.280 1.280 13 H -0.275 1.275 14 H -0.240 1.240 15 C 0.576 3.424 16 S -0.729 6.729 17 N -0.623 5.623 18 C 0.115 3.885 19 C -0.091 4.091 20 C -0.123 4.123 21 C -0.091 4.091 22 C -0.113 4.113 23 C -0.090 4.090 24 C -0.110 4.110 25 C -0.127 4.127 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.418 0.582 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.689 22.088 -1.088 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C -0.028 4.028 4 C -0.043 4.043 5 N -0.226 5.226 6 C 0.109 3.891 7 C -0.556 4.556 8 H 0.048 0.952 9 C -0.176 4.176 10 N -0.583 5.583 11 Si 0.761 3.239 12 H -0.206 1.206 13 H -0.201 1.201 14 H -0.163 1.163 15 C 0.214 3.786 16 S -0.597 6.597 17 N -0.253 5.253 18 C 0.022 3.978 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.092 4.092 22 C -0.169 4.169 23 C -0.092 4.092 24 C -0.166 4.166 25 C -0.147 4.147 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.182 21.182 -1.842 25.017 hybrid contribution -0.318 -0.801 0.939 1.275 sum -13.500 20.381 -0.903 24.463 Atomic orbital electron populations 1.22895 0.79420 1.03530 1.00963 1.87983 1.21591 1.28213 1.95597 1.23067 0.91585 0.85544 1.02609 1.22363 0.94704 1.00820 0.86464 1.47324 1.57330 1.08637 1.09279 1.19824 0.96206 0.73902 0.99138 1.21189 0.96585 0.92849 1.45009 0.95165 1.25579 0.97021 1.00640 0.94396 1.70022 1.20309 1.17980 1.50031 0.85867 0.80788 0.78720 0.78547 1.20564 1.20069 1.16277 1.21694 0.81432 0.84528 0.90956 1.93300 1.70121 1.77739 1.18505 1.42088 1.68903 1.01713 1.12596 1.17544 1.01167 0.92544 0.86515 1.21255 0.99143 0.98310 0.92589 1.20992 1.00785 0.94504 0.97959 1.20120 0.97456 0.95460 0.96151 1.20891 1.02746 0.99370 0.93879 1.19814 0.99391 0.98177 0.91779 1.20864 0.99140 0.92697 1.03911 1.20947 0.98732 0.94647 1.00411 0.93819 0.89499 0.91754 0.87692 0.92938 0.87870 0.86095 0.92200 0.93761 0.92385 0.73901 0.86783 0.85039 0.90931 0.90834 0.89345 0.91004 0.89419 0.90528 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.78 16 2 O -0.41 -11.44 9.53 -148.98 -1.42 -12.86 16 3 C 0.05 1.04 6.28 71.98 0.45 1.49 16 4 C 0.08 2.15 5.63 86.38 0.49 2.63 16 5 N -0.52 -20.45 2.42 -714.16 -1.73 -22.18 16 6 C 0.23 11.29 3.81 85.63 0.33 11.61 16 7 C -0.52 -30.38 9.94 25.60 0.25 -30.12 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.02 1.32 5.47 84.65 0.46 1.78 16 10 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 11 Si 0.94 46.27 27.47 68.60 1.88 48.16 16 12 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.24 -10.78 6.54 99.48 0.65 -10.13 16 15 C 0.58 23.04 7.46 179.05 1.34 24.38 16 16 S -0.73 -37.28 24.45 -56.49 -1.38 -38.66 16 17 N -0.62 -18.42 5.20 -189.98 -0.99 -19.41 16 18 C 0.12 3.46 5.91 38.17 0.23 3.68 16 19 C -0.09 -2.96 7.86 22.40 0.18 -2.78 16 20 C -0.12 -3.34 9.69 22.25 0.22 -3.13 16 21 C -0.09 -2.05 5.88 -19.84 -0.12 -2.17 16 22 C -0.11 -1.70 9.60 71.24 0.68 -1.01 16 23 C -0.09 -1.95 5.88 -19.88 -0.12 -2.06 16 24 C -0.11 -1.53 9.60 71.24 0.68 -0.85 16 25 C -0.13 -3.07 9.62 22.39 0.22 -2.86 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 3.00 8.07 -2.39 -0.02 2.98 16 32 H 0.12 2.22 6.29 -2.39 -0.02 2.21 16 33 H 0.06 2.82 6.17 -2.38 -0.01 2.81 16 34 H 0.04 2.39 6.01 -2.39 -0.01 2.38 16 35 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.42 8.67 6.52 -92.71 -0.60 8.07 16 37 H 0.11 4.35 6.26 -4.60 -0.03 4.32 16 38 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 0.97 8.09 -2.39 -0.02 0.96 16 41 H 0.09 0.96 5.94 -2.39 -0.01 0.94 16 42 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 43 H 0.09 0.90 5.94 -2.39 -0.01 0.89 16 44 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 45 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -85.13 374.26 3.52 -81.60 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.32 Total: 21.27 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.53 Total: 2.38 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -2.42 Total: -101.90 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.42 Total: -12.86 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.16 kcal Atomic # 16 Polarization: -37.28 SS G_CDS: -1.38 Total: -38.66 kcal Total: -85.13 3.52 -81.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.392 kcal (2) G-P(sol) polarization free energy of solvation -85.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds