Wall clock time and date at job start Sat Apr 11 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99843 * 2 1 4 4 C 1.52997 * 109.47000 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47316 * 64.99865 * 4 3 2 6 6 C 1.46498 * 120.00408 * 270.00224 * 5 4 3 7 7 C 1.50703 * 109.47012 * 269.99825 * 6 5 4 8 8 H 1.07995 * 119.99957 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99734 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00203 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99785 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46938 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47249 * 119.99725 * 11 9 7 14 14 H 1.48492 * 109.47148 * 239.99987 * 11 9 7 15 15 C 1.34780 * 119.99881 * 89.99509 * 5 4 3 16 16 S 1.71202 * 119.99849 * 0.02562 * 15 5 4 17 17 N 1.34774 * 120.00073 * 180.02562 * 15 5 4 18 18 C 1.39890 * 120.00041 * 184.27877 * 17 15 5 19 19 C 1.38901 * 120.07198 * 312.64552 * 18 17 15 20 20 C 1.38087 * 119.92911 * 180.02562 * 19 18 17 21 21 C 1.38312 * 120.06916 * 0.25088 * 20 19 18 22 22 C 1.38261 * 120.14185 * 359.49389 * 21 20 19 23 23 C 1.50703 * 119.96116 * 180.27686 * 22 21 20 24 24 C 1.38123 * 120.07297 * 0.50765 * 22 21 20 25 25 C 1.50707 * 120.03654 * 179.77033 * 24 22 21 26 26 H 1.08997 * 109.46943 * 60.00162 * 1 2 3 27 27 H 1.09007 * 109.47040 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47244 * 299.99720 * 1 2 3 29 29 H 1.09001 * 109.47131 * 60.00159 * 3 2 1 30 30 H 1.09003 * 109.47051 * 299.99914 * 3 2 1 31 31 H 1.08995 * 109.47347 * 305.00108 * 4 3 2 32 32 H 1.08996 * 109.47368 * 185.00241 * 4 3 2 33 33 H 1.09001 * 109.47064 * 29.99604 * 6 5 4 34 34 H 1.09002 * 109.47691 * 149.99495 * 6 5 4 35 35 H 0.97006 * 120.00296 * 179.97438 * 10 9 7 36 36 H 0.97002 * 120.00254 * 4.27693 * 17 15 5 37 37 H 1.08003 * 120.03571 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.96636 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.92597 * 179.72593 * 21 20 19 40 40 H 1.08999 * 109.47132 * 270.22839 * 23 22 21 41 41 H 1.08998 * 109.47094 * 30.23191 * 23 22 21 42 42 H 1.08998 * 109.46845 * 150.22884 * 23 22 21 43 43 H 1.08998 * 109.46567 * 269.97563 * 25 24 22 44 44 H 1.08995 * 109.46771 * 29.97576 * 25 24 22 45 45 H 1.08997 * 109.47226 * 149.97829 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1063 -0.8925 -1.3403 7 6 5.5018 -1.2981 -0.9412 8 1 6.2203 -0.5461 -0.6504 9 6 5.8611 -2.6292 -0.9473 10 7 4.9860 -3.5449 -1.3008 11 14 7.5910 -3.1319 -0.4532 12 1 8.3764 -1.9218 -0.1008 13 1 7.5267 -4.0389 0.7209 14 1 8.2449 -3.8345 -1.5863 15 6 4.2633 1.3329 -2.3200 16 16 4.1123 3.0351 -2.2153 17 7 4.6687 0.7619 -3.4715 18 6 5.0519 1.5629 -4.5525 19 6 4.2547 2.6307 -4.9446 20 6 4.6356 3.4191 -6.0123 21 6 5.8068 3.1434 -6.6944 22 6 6.6051 2.0845 -6.3033 23 6 7.8836 1.7916 -7.0456 24 6 6.2299 1.2920 -5.2361 25 6 7.0981 0.1348 -4.8138 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5686 0.8426 32 1 3.9784 2.1765 0.0903 33 1 3.3858 -1.3632 -0.6713 34 1 3.9139 -1.2123 -2.3644 35 1 5.2388 -4.4814 -1.3055 36 1 4.6949 -0.2045 -3.5507 37 1 3.3376 2.8435 -4.4154 38 1 4.0160 4.2492 -6.3180 39 1 6.1001 3.7588 -7.5320 40 1 7.6784 1.1021 -7.8645 41 1 8.2923 2.7195 -7.4455 42 1 8.6046 1.3412 -6.3634 43 1 6.7938 -0.7630 -5.3517 44 1 8.1398 0.3599 -5.0425 45 1 6.9887 -0.0292 -3.7418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728449566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:06 Heat of formation + Delta-G solvation = -4.644542 kcal Electronic energy + Delta-G solvation = -25662.785008 eV Core-core repulsion = 22192.534794 eV Total energy + Delta-G solvation = -3470.250214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04483 -38.61736 -37.30207 -35.20226 -33.10787 -33.06251 -30.97711 -29.62489 -27.90555 -27.06648 -26.20540 -25.91984 -24.24207 -23.12321 -21.28354 -21.11686 -20.00469 -17.85102 -17.24459 -16.84755 -16.15700 -15.87049 -15.47117 -15.42277 -14.96140 -14.90662 -14.54327 -14.13189 -13.79672 -13.46121 -13.27670 -12.72636 -12.70966 -12.45176 -12.42239 -12.26843 -12.01886 -11.70934 -11.65753 -11.56000 -11.36131 -11.17883 -11.06565 -11.03245 -10.78398 -10.63616 -10.61978 -10.20257 -9.96322 -9.45206 -8.92544 -8.79022 -8.31459 -7.82001 -7.16584 -6.59501 -6.38529 -4.49920 1.44601 1.73920 2.19236 2.57134 3.09637 3.19297 3.20948 3.25296 3.92345 4.05363 4.07835 4.19097 4.94479 5.02250 5.11764 5.26017 5.30702 5.38613 5.41000 5.51436 5.55679 5.57258 5.62454 5.65165 5.72418 5.80001 5.89424 5.93609 5.98078 6.03569 6.06880 6.22750 6.25487 6.38109 6.48768 6.67103 6.74460 6.87845 6.88139 7.01512 7.13883 7.32699 7.43238 7.51531 7.66457 7.73931 7.93507 8.57890 9.19281 10.66969 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009008 B = 0.005766 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.696168 B = 4854.790228 C = 7270.192528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.049 3.951 4 C 0.116 3.884 5 N -0.526 5.526 6 C 0.225 3.775 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.071 3.929 10 N -0.884 5.884 11 Si 0.899 3.101 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.574 3.426 16 S -0.705 6.705 17 N -0.631 5.631 18 C 0.141 3.859 19 C -0.068 4.068 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.086 4.086 25 C -0.123 4.123 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.268 0.732 36 H 0.417 0.583 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 6.405 -6.299 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.029 4.029 4 C -0.008 4.008 5 N -0.227 5.227 6 C 0.104 3.896 7 C -0.587 4.587 8 H 0.083 0.917 9 C -0.134 4.134 10 N -0.521 5.521 11 Si 0.726 3.274 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.212 3.788 16 S -0.574 6.574 17 N -0.259 5.259 18 C 0.047 3.953 19 C -0.090 4.090 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.094 4.094 23 C -0.168 4.168 24 C -0.089 4.089 25 C -0.180 4.180 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.259 0.741 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.335 6.995 -6.074 9.554 hybrid contribution 0.724 -1.554 0.316 1.743 sum -1.611 5.440 -5.759 8.084 Atomic orbital electron populations 1.22674 0.81830 1.02385 0.99394 1.88012 1.19014 1.27729 1.95335 1.22942 0.94022 0.84878 1.01055 1.21931 0.92292 1.01517 0.85032 1.47498 1.56981 1.09393 1.08867 1.19852 0.99049 0.71912 0.98822 1.21406 0.96376 0.92826 1.48072 0.91687 1.24921 0.97938 0.96096 0.94426 1.69929 1.34437 1.01453 1.46271 0.86406 0.83625 0.78852 0.78523 1.19476 1.20577 1.20600 1.22013 0.80711 0.94152 0.81941 1.92946 1.79569 0.92577 1.92315 1.42253 1.63661 1.10351 1.09654 1.17254 0.94121 0.95111 0.88767 1.21398 1.00460 0.93427 0.93752 1.20849 0.97376 1.00077 0.95993 1.20925 0.95318 0.97518 1.00070 1.19399 0.97343 0.96125 0.96508 1.20784 0.94579 1.01768 0.99631 1.19602 0.93501 0.98765 0.97064 1.20865 0.98763 0.95481 1.02861 0.94526 0.89910 0.94507 0.92364 0.92203 0.88662 0.86372 0.91483 0.95182 0.92224 0.74085 0.83989 0.86187 0.86588 0.91563 0.91927 0.91333 0.91192 0.91117 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.51 9.53 -35.23 -0.34 -6.85 16 3 C 0.05 0.77 6.28 37.16 0.23 1.01 16 4 C 0.12 2.05 5.57 -4.04 -0.02 2.03 16 5 N -0.53 -10.54 2.42 -177.09 -0.43 -10.97 16 6 C 0.23 5.07 4.78 -5.19 -0.02 5.04 16 7 C -0.55 -13.47 9.39 -34.44 -0.32 -13.79 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.88 -23.14 13.29 55.43 0.74 -22.40 16 11 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.57 11.60 7.56 -86.92 -0.66 10.94 16 16 S -0.71 -14.90 24.40 -107.50 -2.62 -17.52 16 17 N -0.63 -11.92 4.30 -11.40 -0.05 -11.97 16 18 C 0.14 2.50 5.85 -83.70 -0.49 2.01 16 19 C -0.07 -1.16 7.88 -39.39 -0.31 -1.47 16 20 C -0.12 -1.78 10.04 -39.61 -0.40 -2.18 16 21 C -0.12 -1.60 9.70 -39.55 -0.38 -1.98 16 22 C -0.09 -1.30 5.88 -104.65 -0.62 -1.91 16 23 C -0.11 -1.21 9.60 36.01 0.35 -0.86 16 24 C -0.09 -1.39 5.90 -104.43 -0.62 -2.00 16 25 C -0.12 -1.88 9.19 36.01 0.33 -1.54 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.69 8.07 -51.93 -0.42 1.27 16 32 H 0.12 2.10 6.58 -51.93 -0.34 1.76 16 33 H 0.07 1.64 7.11 -51.93 -0.37 1.27 16 34 H 0.03 0.70 6.30 -51.93 -0.33 0.38 16 35 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.42 7.96 6.16 -40.82 -0.25 7.71 16 37 H 0.14 2.59 6.32 -49.82 -0.31 2.28 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.07 0.74 5.94 -51.93 -0.31 0.43 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 45 H 0.07 1.33 7.39 -51.93 -0.38 0.94 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -28.51 376.01 -10.76 -39.27 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.79 Total: 11.53 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.91 Total: -1.49 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.26 Total: -45.34 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.34 Total: -6.85 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: -14.90 SS G_CDS: -2.62 Total: -17.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.51 -10.76 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.627 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds