Wall clock time and date at job start Sat Apr 11 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00259 * 2 1 4 4 C 1.52998 * 109.47150 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47365 * 65.00008 * 4 3 2 6 6 C 1.46496 * 119.99744 * 269.99999 * 5 4 3 7 7 C 1.50703 * 109.47297 * 269.99873 * 6 5 4 8 8 H 1.08002 * 119.99849 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00289 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99873 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99936 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46848 * 90.00398 * 11 9 7 13 13 H 1.48503 * 109.47136 * 209.99979 * 11 9 7 14 14 H 1.48493 * 109.47450 * 330.00306 * 11 9 7 15 15 C 1.34776 * 119.99838 * 89.99569 * 5 4 3 16 16 S 1.71206 * 119.99443 * 180.02562 * 15 5 4 17 17 N 1.34773 * 120.00444 * 0.27776 * 15 5 4 18 18 C 1.39891 * 119.99939 * 174.21427 * 17 15 5 19 19 C 1.38904 * 120.07233 * 315.58184 * 18 17 15 20 20 C 1.38092 * 119.92331 * 179.74523 * 19 18 17 21 21 C 1.38302 * 120.07123 * 0.53532 * 20 19 18 22 22 C 1.50701 * 119.92846 * 179.76706 * 21 20 19 23 23 C 1.38263 * 120.14602 * 359.73787 * 21 20 19 24 24 C 1.38124 * 120.07011 * 359.97438 * 23 21 20 25 25 C 1.50705 * 120.03716 * 179.97438 * 24 23 21 26 26 H 1.09010 * 109.47334 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47317 * 300.00006 * 1 2 3 28 28 H 1.09003 * 109.47404 * 60.00382 * 1 2 3 29 29 H 1.08994 * 109.47313 * 60.00052 * 3 2 1 30 30 H 1.09002 * 109.46861 * 299.99947 * 3 2 1 31 31 H 1.08997 * 109.47265 * 304.99545 * 4 3 2 32 32 H 1.09005 * 109.46730 * 184.99695 * 4 3 2 33 33 H 1.09004 * 109.47289 * 30.00086 * 6 5 4 34 34 H 1.08997 * 109.47307 * 149.99601 * 6 5 4 35 35 H 0.96997 * 119.99673 * 180.02562 * 10 9 7 36 36 H 0.97001 * 119.99820 * 354.21996 * 17 15 5 37 37 H 1.07991 * 120.03331 * 0.02562 * 19 18 17 38 38 H 1.07996 * 119.96237 * 180.25143 * 20 19 18 39 39 H 1.09001 * 109.47002 * 269.97488 * 22 21 20 40 40 H 1.09009 * 109.46937 * 29.97062 * 22 21 20 41 41 H 1.08997 * 109.47538 * 149.97095 * 22 21 20 42 42 H 1.07998 * 119.96497 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.46873 * 270.02534 * 25 24 23 44 44 H 1.08998 * 109.46874 * 30.02205 * 25 24 23 45 45 H 1.08996 * 109.47312 * 150.02659 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8922 -1.3427 7 6 5.5009 -1.2980 -0.9449 8 1 6.2198 -0.5461 -0.6545 9 6 5.8605 -2.6290 -0.9526 10 7 4.9856 -3.5445 -1.3077 11 14 7.5908 -3.1318 -0.4601 12 1 7.6353 -3.3847 1.0026 13 1 7.9730 -4.3685 -1.1881 14 1 8.5395 -2.0422 -0.8031 15 6 4.2615 1.3336 -2.3218 16 16 4.7753 0.6086 -3.7852 17 7 4.1476 2.6739 -2.2374 18 6 4.5588 3.4794 -3.3047 19 6 5.7648 3.2244 -3.9449 20 6 6.1652 4.0182 -5.0015 21 6 5.3721 5.0729 -5.4153 22 6 5.8146 5.9404 -6.5654 23 6 4.1737 5.3329 -4.7765 24 6 3.7646 4.5390 -3.7228 25 6 2.4586 4.8234 -3.0267 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6887 1.8463 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0889 33 1 3.3851 -1.3630 -0.6734 34 1 3.9119 -1.2116 -2.3668 35 1 5.2385 -4.4809 -1.3127 36 1 3.7807 3.0800 -1.4365 37 1 6.3865 2.4035 -3.6195 38 1 7.1008 3.8180 -5.5023 39 1 6.4068 6.7730 -6.1856 40 1 6.4182 5.3498 -7.2547 41 1 4.9390 6.3258 -7.0878 42 1 3.5564 6.1570 -5.1023 43 1 2.6297 5.5147 -2.2016 44 1 1.7591 5.2683 -3.7344 45 1 2.0424 3.8929 -2.6407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728450403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:08 Heat of formation + Delta-G solvation = 3.742388 kcal Electronic energy + Delta-G solvation = -25376.348988 eV Core-core repulsion = 21906.462458 eV Total energy + Delta-G solvation = -3469.886529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.18685 -38.75047 -37.36685 -35.39324 -32.99465 -32.56592 -31.20233 -30.39001 -27.61567 -27.18653 -26.42245 -25.71941 -24.08868 -23.09120 -22.07090 -20.60444 -20.42223 -18.11771 -17.52274 -16.58354 -16.35648 -15.89594 -15.45720 -15.30137 -15.03223 -14.78661 -14.37357 -14.04981 -13.89347 -13.52502 -13.43878 -13.23885 -13.04144 -12.62605 -12.50205 -12.29046 -12.15902 -11.95599 -11.84414 -11.43492 -11.35096 -11.23577 -11.04353 -10.96213 -10.77600 -10.60047 -10.25769 -10.10210 -9.80230 -9.66030 -8.84922 -8.57077 -8.37699 -7.79066 -6.85361 -6.20722 -5.98879 -4.02405 1.31625 1.63820 2.22531 2.66142 3.32713 3.34205 3.41760 3.46357 3.71115 3.75701 3.94348 4.49227 4.80528 4.92701 4.94253 5.02068 5.09979 5.11904 5.18888 5.29469 5.34010 5.34559 5.37178 5.38782 5.44960 5.54914 5.59767 5.68369 5.72721 5.81268 5.84048 5.95038 6.02902 6.20931 6.41964 6.50058 6.71527 6.77702 6.86214 7.15721 7.24016 7.32907 7.55422 7.59681 7.95415 8.00497 8.21198 8.95588 9.59364 11.09637 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.004595 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.168136 B = 6092.044210 C = 8031.710495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.045 3.955 4 C 0.089 3.911 5 N -0.523 5.523 6 C 0.241 3.759 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.898 3.102 12 H -0.283 1.283 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.550 3.450 16 S -0.628 6.628 17 N -0.655 5.655 18 C 0.145 3.855 19 C -0.061 4.061 20 C -0.119 4.119 21 C -0.090 4.090 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.112 4.112 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.395 0.605 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.119 0.881 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 19.500 0.788 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.034 4.034 4 C -0.038 4.038 5 N -0.226 5.226 6 C 0.122 3.878 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.134 4.134 10 N -0.527 5.527 11 Si 0.726 3.274 12 H -0.209 1.209 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.193 3.807 16 S -0.494 6.494 17 N -0.285 5.285 18 C 0.051 3.949 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.091 4.091 22 C -0.167 4.167 23 C -0.140 4.140 24 C -0.101 4.101 25 C -0.169 4.169 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.234 0.766 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.277 18.442 -0.069 19.482 hybrid contribution 0.193 0.340 1.479 1.530 sum -6.085 18.782 1.410 19.794 Atomic orbital electron populations 1.22738 0.81389 1.03019 0.99290 1.88103 1.19288 1.26131 1.95172 1.23002 0.94058 0.86218 1.00092 1.21901 0.92419 0.99505 0.89977 1.47899 1.57151 1.10926 1.06639 1.20035 0.97840 0.68183 1.01697 1.21139 0.96564 0.92310 1.45864 0.92747 1.24802 0.97285 0.96210 0.95140 1.69934 1.34327 1.01041 1.47385 0.86505 0.84681 0.78224 0.78040 1.20897 1.21052 1.19902 1.22393 0.83101 0.82857 0.92374 1.93143 1.66331 1.75999 1.13944 1.42328 1.64451 1.03339 1.18373 1.17149 0.93743 0.92300 0.91736 1.21368 0.94328 0.97234 0.95440 1.20800 1.00089 0.95152 0.97839 1.19833 0.95054 0.96676 0.97498 1.20742 1.01384 0.98713 0.95846 1.20513 0.96885 1.00106 0.96470 1.19591 0.95748 0.97304 0.97501 1.20700 0.94259 1.01668 1.00225 0.89370 0.94455 0.94396 0.92199 0.93663 0.87097 0.90063 0.93051 0.90712 0.92740 0.76631 0.84035 0.86005 0.91579 0.91632 0.91921 0.86293 0.91538 0.91251 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.37 -5.88 9.53 -35.23 -0.34 -6.22 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.09 1.31 5.54 -4.04 -0.02 1.29 16 5 N -0.52 -10.51 2.42 -177.08 -0.43 -10.94 16 6 C 0.24 6.13 4.74 -5.19 -0.02 6.10 16 7 C -0.52 -14.40 9.39 -34.44 -0.32 -14.72 16 8 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 10 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.55 11.08 7.46 -86.92 -0.65 10.43 16 16 S -0.63 -15.59 24.68 -107.50 -2.65 -18.24 16 17 N -0.65 -10.18 4.33 -11.40 -0.05 -10.23 16 18 C 0.14 2.26 5.81 -83.70 -0.49 1.77 16 19 C -0.06 -1.03 7.88 -39.39 -0.31 -1.34 16 20 C -0.12 -1.70 9.69 -39.61 -0.38 -2.08 16 21 C -0.09 -1.11 5.88 -104.59 -0.62 -1.73 16 22 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 23 C -0.12 -1.45 9.35 -39.61 -0.37 -1.82 16 24 C -0.10 -1.28 5.90 -104.43 -0.62 -1.89 16 25 C -0.11 -1.11 9.55 36.01 0.34 -0.77 16 26 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.11 1.73 8.07 -51.93 -0.42 1.31 16 32 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 33 H 0.05 1.37 7.12 -51.93 -0.37 1.00 16 34 H 0.08 2.19 6.58 -51.93 -0.34 1.85 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.40 4.80 6.12 -40.82 -0.25 4.55 16 37 H 0.14 2.75 6.53 -52.49 -0.34 2.40 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.58 8.08 -51.92 -0.42 0.16 16 41 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.06 0.64 7.34 -51.93 -0.38 0.26 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -34.77 380.73 -10.91 -45.68 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.05 Total: 4.13 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.85 Total: -1.27 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.26 Total: -46.84 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.34 Total: -6.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -15.59 SS G_CDS: -2.65 Total: -18.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.77 -10.91 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728450403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.421 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds