Wall clock time and date at job start Sat Apr 11 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46959 * 178.50381 * 3 2 1 5 5 N 1.46904 * 109.46953 * 179.97438 * 4 3 2 6 6 C 1.49316 * 111.00021 * 75.46822 * 5 4 3 7 7 C 1.55032 * 102.76247 * 161.50122 * 6 5 4 8 8 C 1.55884 * 103.26479 * 323.94133 * 7 6 5 9 9 H 1.08996 * 109.73758 * 258.82285 * 8 7 6 10 10 C 1.51201 * 107.29970 * 139.74133 * 8 7 6 11 11 C 1.51515 * 114.83784 * 206.96349 * 10 8 7 12 12 N 1.45507 * 111.15360 * 46.38283 * 11 10 8 13 13 C 1.34777 * 119.38345 * 132.22846 * 12 11 10 14 14 O 1.21283 * 120.00463 * 179.73179 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.45302 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00336 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99494 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47141 * 90.00156 * 21 19 17 23 23 H 1.48505 * 109.47177 * 209.99950 * 21 19 17 24 24 H 1.48496 * 109.47259 * 329.99923 * 21 19 17 25 25 C 1.45226 * 121.23823 * 311.94917 * 12 11 10 26 26 C 1.47172 * 110.99797 * 190.00152 * 5 4 3 27 27 H 1.08999 * 103.92876 * 318.07340 * 26 5 4 28 28 H 4.44648 * 5.63367 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47466 * 58.50280 * 3 2 1 30 30 H 1.09001 * 109.47017 * 298.50149 * 3 2 1 31 31 H 1.09004 * 109.47046 * 60.00155 * 4 3 2 32 32 H 1.08991 * 109.47266 * 299.99758 * 4 3 2 33 33 H 1.08999 * 110.75457 * 279.82368 * 6 5 4 34 34 H 1.09004 * 110.75207 * 43.17973 * 6 5 4 35 35 H 1.08997 * 110.66070 * 82.38970 * 7 6 5 36 36 H 1.09000 * 110.65905 * 205.49972 * 7 6 5 37 37 H 1.08998 * 108.39838 * 328.53712 * 10 8 7 38 38 H 1.09008 * 108.39262 * 85.72607 * 10 8 7 39 39 H 1.09002 * 109.28781 * 285.91079 * 11 10 8 40 40 H 1.09004 * 109.14258 * 166.75615 * 11 10 8 41 41 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 42 42 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 43 43 H 0.97003 * 119.99714 * 180.02562 * 20 19 17 44 44 H 1.08995 * 108.52068 * 157.90542 * 25 12 11 45 45 H 1.08998 * 108.52132 * 275.56801 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4429 -0.0377 5 7 4.6244 1.4436 -0.0370 6 6 5.1602 1.0588 -1.3766 7 6 6.6213 1.5741 -1.3219 8 6 6.5042 2.8953 -0.5029 9 1 6.5229 3.7502 -1.1788 10 6 7.6954 2.9554 0.4263 11 6 7.4732 3.7530 1.6952 12 7 6.2057 3.4047 2.3192 13 6 6.1689 3.1434 3.6409 14 8 5.1177 2.8566 4.1735 15 6 7.4353 3.2015 4.4558 16 16 7.0622 2.7968 6.1801 17 6 8.6722 2.9357 6.8823 18 1 9.5121 3.2040 6.2586 19 6 8.8610 2.7013 8.2373 20 7 10.0637 2.8056 8.7619 21 14 7.4082 2.2379 9.3163 22 1 7.2571 0.7608 9.3354 23 1 7.6412 2.7296 10.6981 24 1 6.1716 2.8551 8.7732 25 6 4.9783 3.3390 1.5456 26 6 5.1510 2.8028 0.1662 27 1 4.5102 3.4281 -0.4553 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.5361 -0.8762 30 1 3.0095 -0.4896 0.9031 31 1 2.7917 1.9797 0.8386 32 1 2.7918 1.9332 -0.9407 33 1 5.1368 -0.0233 -1.5056 34 1 4.6048 1.5557 -2.1720 35 1 7.2626 0.8584 -0.8076 36 1 6.9958 1.7757 -2.3255 37 1 7.9697 1.9367 0.7004 38 1 8.5316 3.3987 -0.1146 39 1 7.4728 4.8166 1.4566 40 1 8.2835 3.5459 2.3942 41 1 8.1544 2.4834 4.0615 42 1 7.8569 4.2051 4.4013 43 1 10.1957 2.6414 9.7088 44 1 4.2678 2.7058 2.0768 45 1 4.5597 4.3429 1.4746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222306349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:40 Heat of formation + Delta-G solvation = 31.750377 kcal Electronic energy + Delta-G solvation = -24922.103108 eV Core-core repulsion = 21453.431096 eV Total energy + Delta-G solvation = -3468.672012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86621 -39.02423 -36.41129 -34.93099 -33.33036 -32.41490 -31.55279 -30.58702 -29.00767 -28.28620 -25.61652 -24.83576 -23.95508 -22.80055 -21.38723 -20.35468 -18.51291 -18.14813 -17.71567 -16.82177 -16.45056 -16.03903 -15.74592 -15.38292 -15.11211 -14.90356 -14.53789 -14.27956 -13.89136 -13.70710 -13.56659 -13.14391 -13.07749 -12.92021 -12.76752 -12.72142 -12.13958 -12.07094 -11.70425 -11.48744 -11.36468 -11.22058 -11.03734 -10.98324 -10.83545 -10.68175 -10.55945 -10.44294 -10.29833 -9.83321 -9.42528 -8.97884 -8.74798 -8.52470 -8.44973 -6.88715 -6.26677 -3.97888 2.53293 2.62063 2.75242 2.98753 3.24122 3.35824 3.45676 3.53273 3.62293 4.15390 4.23342 4.25055 4.35622 4.47941 4.64440 4.70964 4.78800 4.89970 4.92551 5.02694 5.07846 5.12174 5.12854 5.14216 5.19786 5.33344 5.36744 5.49890 5.54107 5.58729 5.61955 5.66347 5.71142 5.73436 5.79225 5.82101 5.84771 5.95079 6.01747 6.05185 6.55758 6.66420 6.73924 7.38462 7.50506 7.96417 8.43626 8.49918 9.19816 10.82531 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003115 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.482707 B = 8987.994758 C =10375.444763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.184 4.184 3 C -0.006 4.006 4 C 0.050 3.950 5 N -0.505 5.505 6 C 0.029 3.971 7 C -0.120 4.120 8 C -0.078 4.078 9 H 0.078 0.922 10 C -0.125 4.125 11 C 0.108 3.892 12 N -0.604 5.604 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.120 4.120 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.131 3.869 26 C 0.072 3.928 27 H 0.031 0.969 28 H 0.217 0.783 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.096 0.904 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 -0.866 -25.349 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.184 4.184 3 C -0.043 4.043 4 C -0.078 4.078 5 N -0.230 5.230 6 C -0.099 4.099 7 C -0.158 4.158 8 C -0.098 4.098 9 H 0.097 0.903 10 C -0.163 4.163 11 C -0.016 4.016 12 N -0.340 5.340 13 C 0.320 3.680 14 O -0.392 6.392 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.007 3.993 26 C -0.038 4.038 27 H 0.049 0.951 28 H 0.233 0.767 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.378 -1.645 -23.988 26.601 hybrid contribution 0.355 0.694 -0.745 1.078 sum -11.023 -0.952 -24.733 27.095 Atomic orbital electron populations 1.24910 0.95967 1.00430 1.01547 1.23079 0.94495 1.00694 1.00153 1.18595 0.84193 0.97376 1.04158 1.22234 0.87552 0.96332 1.01695 1.64868 1.07202 1.23011 1.27891 1.23439 0.95336 1.01409 0.89714 1.23001 0.96436 0.96386 1.00006 1.21018 0.93507 0.98484 0.96773 0.90341 1.21249 0.97472 1.02056 0.95522 1.21075 0.86398 0.98785 0.95293 1.47097 1.08327 1.70747 1.07807 1.20314 0.90745 0.75643 0.81342 1.90684 1.32059 1.46244 1.70175 1.23310 0.97846 1.05506 1.00414 1.84807 1.15985 1.91747 0.99123 1.22312 0.92232 1.54711 0.97473 0.89404 1.24707 0.95983 0.93598 0.97019 1.69940 1.21010 1.47366 1.13466 0.86739 0.84268 0.80331 0.80544 1.19207 1.19992 1.15909 1.20100 0.87953 1.00560 0.90671 1.20874 0.96534 0.90032 0.96315 0.95125 0.76663 0.89720 0.88354 0.90011 0.94102 0.89644 0.93502 0.90094 0.91043 0.91040 0.90662 0.92006 0.88891 0.88485 0.88539 0.91975 0.88583 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.18 -1.87 13.34 -37.12 -0.50 -2.37 16 3 C -0.01 -0.06 5.83 -29.52 -0.17 -0.23 16 4 C 0.05 0.47 4.49 -3.82 -0.02 0.45 16 5 N -0.51 -4.97 5.15 -226.46 -1.17 -6.14 16 6 C 0.03 0.21 6.01 -1.40 -0.01 0.21 16 7 C -0.12 -0.86 6.54 -24.12 -0.16 -1.01 16 8 C -0.08 -0.64 3.25 -90.87 -0.30 -0.93 16 9 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 10 C -0.12 -1.07 5.41 -28.39 -0.15 -1.23 16 11 C 0.11 1.16 6.26 -5.33 -0.03 1.12 16 12 N -0.60 -8.50 3.07 -178.75 -0.55 -9.05 16 13 C 0.53 9.89 7.66 -10.98 -0.08 9.81 16 14 O -0.52 -11.51 15.22 5.55 0.08 -11.42 16 15 C -0.12 -2.37 4.47 36.01 0.16 -2.21 16 16 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 17 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 18 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 21 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C 0.13 1.64 5.79 -6.69 -0.04 1.60 16 26 C 0.07 0.70 2.12 -70.41 -0.15 0.56 16 27 H 0.03 0.28 7.57 -51.93 -0.39 -0.12 16 28 H 0.22 1.23 7.80 -54.08 -0.42 0.81 16 29 H 0.08 0.65 7.47 -51.93 -0.39 0.26 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.86 6.90 -51.93 -0.36 0.50 16 32 H 0.04 0.35 7.80 -51.93 -0.40 -0.06 16 33 H 0.09 0.59 7.81 -51.93 -0.41 0.19 16 34 H 0.05 0.32 7.83 -51.93 -0.41 -0.09 16 35 H 0.08 0.64 7.18 -51.93 -0.37 0.27 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.69 7.15 -51.93 -0.37 0.32 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.03 5.73 -51.93 -0.30 0.73 16 41 H 0.10 1.79 7.53 -51.91 -0.39 1.40 16 42 H 0.10 1.76 7.96 -51.92 -0.41 1.35 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 1.43 5.85 -51.93 -0.30 1.13 16 45 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -34.34 370.36 -9.68 -44.02 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.04 Total: -1.10 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.66 Total: -7.58 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.94 Total: -41.08 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.34 -9.68 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222306349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.772 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds