Wall clock time and date at job start Sat Apr 11 2020 00:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46959 * 178.50381 * 3 2 1 5 5 N 1.46904 * 109.46953 * 179.97438 * 4 3 2 6 6 C 1.49316 * 111.00021 * 75.46822 * 5 4 3 7 7 C 1.55032 * 102.76247 * 161.50122 * 6 5 4 8 8 C 1.55884 * 103.26479 * 323.94133 * 7 6 5 9 9 H 1.08996 * 109.73758 * 258.82285 * 8 7 6 10 10 C 1.51201 * 107.29970 * 139.74133 * 8 7 6 11 11 C 1.51515 * 114.83784 * 206.96349 * 10 8 7 12 12 N 1.45507 * 111.15360 * 46.38283 * 11 10 8 13 13 C 1.34777 * 119.38345 * 132.22846 * 12 11 10 14 14 O 1.21283 * 120.00463 * 179.73179 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.45302 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00336 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99494 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47141 * 90.00156 * 21 19 17 23 23 H 1.48505 * 109.47177 * 209.99950 * 21 19 17 24 24 H 1.48496 * 109.47259 * 329.99923 * 21 19 17 25 25 C 1.45226 * 121.23823 * 311.94917 * 12 11 10 26 26 C 1.47172 * 110.99797 * 190.00152 * 5 4 3 27 27 H 1.08999 * 103.92876 * 318.07340 * 26 5 4 28 28 H 4.44648 * 5.63367 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47466 * 58.50280 * 3 2 1 30 30 H 1.09001 * 109.47017 * 298.50149 * 3 2 1 31 31 H 1.09004 * 109.47046 * 60.00155 * 4 3 2 32 32 H 1.08991 * 109.47266 * 299.99758 * 4 3 2 33 33 H 1.08999 * 110.75457 * 279.82368 * 6 5 4 34 34 H 1.09004 * 110.75207 * 43.17973 * 6 5 4 35 35 H 1.08997 * 110.66070 * 82.38970 * 7 6 5 36 36 H 1.09000 * 110.65905 * 205.49972 * 7 6 5 37 37 H 1.08998 * 108.39838 * 328.53712 * 10 8 7 38 38 H 1.09008 * 108.39262 * 85.72607 * 10 8 7 39 39 H 1.09002 * 109.28781 * 285.91079 * 11 10 8 40 40 H 1.09004 * 109.14258 * 166.75615 * 11 10 8 41 41 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 42 42 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 43 43 H 0.97003 * 119.99714 * 180.02562 * 20 19 17 44 44 H 1.08995 * 108.52068 * 157.90542 * 25 12 11 45 45 H 1.08998 * 108.52132 * 275.56801 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4429 -0.0377 5 7 4.6244 1.4436 -0.0370 6 6 5.1602 1.0588 -1.3766 7 6 6.6213 1.5741 -1.3219 8 6 6.5042 2.8953 -0.5029 9 1 6.5229 3.7502 -1.1788 10 6 7.6954 2.9554 0.4263 11 6 7.4732 3.7530 1.6952 12 7 6.2057 3.4047 2.3192 13 6 6.1689 3.1434 3.6409 14 8 5.1177 2.8566 4.1735 15 6 7.4353 3.2015 4.4558 16 16 7.0622 2.7968 6.1801 17 6 8.6722 2.9357 6.8823 18 1 9.5121 3.2040 6.2586 19 6 8.8610 2.7013 8.2373 20 7 10.0637 2.8056 8.7619 21 14 7.4082 2.2379 9.3163 22 1 7.2571 0.7608 9.3354 23 1 7.6412 2.7296 10.6981 24 1 6.1716 2.8551 8.7732 25 6 4.9783 3.3390 1.5456 26 6 5.1510 2.8028 0.1662 27 1 4.5102 3.4281 -0.4553 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.5361 -0.8762 30 1 3.0095 -0.4896 0.9031 31 1 2.7917 1.9797 0.8386 32 1 2.7918 1.9332 -0.9407 33 1 5.1368 -0.0233 -1.5056 34 1 4.6048 1.5557 -2.1720 35 1 7.2626 0.8584 -0.8076 36 1 6.9958 1.7757 -2.3255 37 1 7.9697 1.9367 0.7004 38 1 8.5316 3.3987 -0.1146 39 1 7.4728 4.8166 1.4566 40 1 8.2835 3.5459 2.3942 41 1 8.1544 2.4834 4.0615 42 1 7.8569 4.2051 4.4013 43 1 10.1957 2.6414 9.7088 44 1 4.2678 2.7058 2.0768 45 1 4.5597 4.3429 1.4746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222306349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:39 Heat of formation + Delta-G solvation = 9.234931 kcal Electronic energy + Delta-G solvation = -24923.079451 eV Core-core repulsion = 21453.431096 eV Total energy + Delta-G solvation = -3469.648355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79364 -40.18651 -37.42103 -35.79027 -34.66744 -34.10307 -32.60026 -31.42559 -30.19400 -29.11495 -27.85342 -25.78201 -24.75479 -23.55719 -22.01356 -21.57038 -19.86103 -19.18491 -18.88538 -18.25481 -17.37622 -17.12682 -16.97281 -16.71629 -16.32254 -16.01024 -15.70080 -15.33207 -15.14110 -14.95626 -14.75781 -14.45628 -14.00203 -13.87004 -13.81854 -13.70594 -13.34022 -13.29215 -13.03926 -12.97542 -12.61291 -12.50555 -12.17759 -12.05923 -11.86394 -11.75424 -11.50253 -11.39249 -11.17396 -11.16848 -11.02373 -10.90788 -10.50388 -9.68766 -9.43420 -9.00016 -8.51177 -6.21877 0.97505 1.31314 1.46132 1.51102 1.55130 1.80078 1.88318 2.08491 2.25436 2.69353 2.76343 2.87090 3.44442 3.55813 3.60975 3.63297 3.83149 3.98053 4.09089 4.15732 4.17542 4.18938 4.33367 4.37917 4.42080 4.45328 4.48325 4.50275 4.65423 4.69677 4.82834 4.87733 4.91066 4.97347 5.01912 5.07324 5.16045 5.22686 5.26704 5.35740 5.60472 5.71553 5.88444 6.00803 6.11918 6.25684 6.66989 6.94294 7.09515 8.61133 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003115 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.482707 B = 8987.994758 C =10375.444763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.221 4.221 3 C -0.002 4.002 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.029 3.971 7 C -0.115 4.115 8 C -0.078 4.078 9 H 0.102 0.898 10 C -0.120 4.120 11 C 0.097 3.903 12 N -0.591 5.591 13 C 0.530 3.470 14 O -0.564 6.564 15 C -0.103 4.103 16 S -0.180 6.180 17 C -0.525 4.525 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.238 1.238 25 C 0.130 3.870 26 C 0.070 3.930 27 H 0.044 0.956 28 H 0.245 0.755 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.066 0.934 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.552 -0.447 -27.938 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.221 4.221 3 C -0.039 4.039 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.098 4.098 7 C -0.153 4.153 8 C -0.098 4.098 9 H 0.120 0.880 10 C -0.158 4.158 11 C -0.025 4.025 12 N -0.324 5.324 13 C 0.317 3.683 14 O -0.442 6.442 15 C -0.254 4.254 16 S 0.047 5.953 17 C -0.673 4.673 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.162 1.162 25 C 0.007 3.993 26 C -0.040 4.040 27 H 0.062 0.938 28 H 0.261 0.739 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.808 -1.216 -26.630 29.156 hybrid contribution 0.503 0.595 -0.101 0.786 sum -11.306 -0.620 -26.731 29.030 Atomic orbital electron populations 1.25723 0.96902 0.99207 1.00301 1.23526 0.95333 1.01893 1.01361 1.18541 0.84016 0.97344 1.03979 1.22124 0.87593 0.96216 1.01165 1.64834 1.07340 1.23198 1.29777 1.23510 0.95683 1.01872 0.88731 1.22979 0.95874 0.95460 1.00940 1.21098 0.91862 0.99983 0.96820 0.88002 1.21242 0.98818 1.01055 0.94698 1.21414 0.84322 1.00674 0.96082 1.47122 1.10309 1.68598 1.06347 1.20100 0.89442 0.75894 0.82820 1.90667 1.33180 1.48904 1.71472 1.23266 0.99056 1.06715 0.96322 1.84765 1.14297 1.92209 1.04025 1.22430 0.93054 1.54183 0.97644 0.91762 1.25525 0.98374 0.93617 0.98345 1.70010 1.22728 1.48401 1.14261 0.85896 0.81031 0.80144 0.79485 1.18781 1.18224 1.16243 1.20236 0.86546 1.00858 0.91666 1.20843 0.98321 0.90350 0.94443 0.93812 0.73889 0.88253 0.90022 0.92058 0.93032 0.89277 0.92203 0.91143 0.88700 0.92432 0.87752 0.89606 0.89398 0.87121 0.86838 0.91359 0.91531 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.52 19.25 74.32 1.43 -2.09 16 2 C -0.22 -4.44 13.34 31.12 0.42 -4.02 16 3 C 0.00 -0.03 5.83 28.79 0.17 0.13 16 4 C 0.06 1.05 4.49 86.30 0.39 1.43 16 5 N -0.53 -9.77 5.15 -870.38 -4.48 -14.25 16 6 C 0.03 0.37 6.01 86.53 0.52 0.89 16 7 C -0.11 -1.27 6.54 32.29 0.21 -1.05 16 8 C -0.08 -1.00 3.25 -10.96 -0.04 -1.04 16 9 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 10 C -0.12 -1.70 5.41 29.52 0.16 -1.54 16 11 C 0.10 1.85 6.26 86.08 0.54 2.39 16 12 N -0.59 -16.03 3.07 -837.81 -2.57 -18.60 16 13 C 0.53 19.73 7.66 87.66 0.67 20.40 16 14 O -0.56 -25.72 15.22 -3.04 -0.05 -25.76 16 15 C -0.10 -4.04 4.47 71.24 0.32 -3.72 16 16 S -0.18 -9.32 18.55 -56.49 -1.05 -10.37 16 17 C -0.53 -30.85 10.04 67.95 0.68 -30.17 16 18 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 19 C 0.05 2.77 5.50 84.86 0.47 3.24 16 20 N -0.92 -56.01 13.97 21.65 0.30 -55.71 16 21 Si 0.91 45.65 27.74 68.60 1.90 47.55 16 22 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 25 C 0.13 3.17 5.79 85.35 0.49 3.67 16 26 C 0.07 1.24 2.12 43.02 0.09 1.33 16 27 H 0.04 0.67 7.57 -2.39 -0.02 0.66 16 28 H 0.24 2.29 7.80 -4.41 -0.03 2.26 16 29 H 0.10 1.45 7.47 -2.39 -0.02 1.43 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.35 6.90 -2.39 -0.02 1.33 16 32 H 0.05 0.81 7.80 -2.39 -0.02 0.79 16 33 H 0.09 1.05 7.81 -2.39 -0.02 1.03 16 34 H 0.06 0.62 7.83 -2.38 -0.02 0.60 16 35 H 0.07 0.95 7.18 -2.39 -0.02 0.93 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.99 7.15 -2.39 -0.02 0.98 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.78 5.73 -2.38 -0.01 1.76 16 41 H 0.11 4.03 7.53 -2.39 -0.02 4.02 16 42 H 0.11 4.06 7.96 -2.40 -0.02 4.04 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.88 16 44 H 0.07 2.06 5.85 -2.39 -0.01 2.04 16 45 H 0.07 1.54 8.13 -2.39 -0.02 1.53 16 Total: -1.00 -76.04 370.36 1.51 -74.53 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.93 Total: 12.76 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 6.52 Total: -10.16 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -6.75 Total: -88.55 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.37 kcal Total: -76.04 1.51 -74.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222306349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.768 kcal (2) G-P(sol) polarization free energy of solvation -76.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds