Wall clock time and date at job start Sat Apr 11 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50712 * 119.99276 * 2 1 4 4 C 1.53001 * 109.46630 * 122.24620 * 3 2 1 5 5 H 1.09003 * 109.47160 * 305.28201 * 4 3 2 6 6 O 1.42899 * 109.47520 * 65.28817 * 4 3 2 7 7 C 1.42898 * 113.99679 * 256.91559 * 6 4 3 8 8 C 1.53005 * 109.46835 * 180.11443 * 7 6 4 9 9 C 1.53005 * 109.47169 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47160 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47160 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47089 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99775 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99762 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99948 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47076 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47082 * 120.00279 * 16 14 12 19 19 H 1.48497 * 109.47280 * 240.00339 * 16 14 12 20 20 C 1.50696 * 109.46771 * 185.28625 * 4 3 2 21 21 C 1.38245 * 119.99085 * 99.99956 * 20 4 3 22 22 C 1.38212 * 120.01897 * 180.02562 * 21 20 4 23 23 C 1.38351 * 119.98195 * 0.25924 * 22 21 20 24 24 Cl 1.73600 * 120.00907 * 179.69683 * 23 22 21 25 25 C 1.38353 * 119.97797 * 359.46303 * 23 22 21 26 26 C 1.38215 * 119.98234 * 0.55888 * 25 23 22 27 27 H 1.07990 * 120.00578 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99254 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00844 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46905 * 2.24613 * 3 2 1 31 31 H 1.08998 * 109.46553 * 242.23994 * 3 2 1 32 32 H 1.08999 * 109.47394 * 300.11441 * 7 6 4 33 33 H 1.08998 * 109.47527 * 60.11597 * 7 6 4 34 34 H 1.08990 * 109.47534 * 299.99724 * 8 7 6 35 35 H 1.09005 * 109.47154 * 60.00126 * 8 7 6 36 36 H 1.09007 * 109.47033 * 300.00327 * 9 8 7 37 37 H 1.08995 * 109.47154 * 59.99593 * 9 8 7 38 38 H 1.08995 * 109.46887 * 299.99640 * 10 9 8 39 39 H 1.08998 * 109.47151 * 59.99795 * 10 9 8 40 40 H 1.09001 * 109.46878 * 300.00517 * 11 10 9 41 41 H 1.09005 * 109.46876 * 59.99826 * 11 10 9 42 42 H 0.97003 * 119.99515 * 179.97438 * 15 14 12 43 43 H 1.08008 * 119.99046 * 0.02562 * 21 20 4 44 44 H 1.08003 * 120.00860 * 179.97438 * 22 21 20 45 45 H 1.07994 * 120.00727 * 180.25646 * 25 23 22 46 46 H 1.07999 * 119.99350 * 179.72520 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 2.9849 1.3621 1.2201 5 1 2.4009 1.1928 2.1247 6 8 3.9896 0.3524 1.1057 7 6 3.7576 -0.7939 1.9268 8 6 4.8908 -1.8023 1.7266 9 6 4.6427 -3.0295 2.6061 10 6 5.7762 -4.0376 2.4064 11 6 5.5285 -5.2644 3.2865 12 6 6.6445 -6.2576 3.0893 13 1 7.4502 -6.0358 2.4051 14 6 6.6377 -7.4491 3.7832 15 7 5.6568 -7.7189 4.6167 16 14 8.0214 -8.6799 3.5394 17 1 8.9953 -8.1414 2.5561 18 1 8.7069 -8.9172 4.8352 19 1 7.4625 -9.9593 3.0334 20 6 3.6404 2.7172 1.2916 21 6 3.1473 3.6787 2.1539 22 6 3.7478 4.9218 2.2196 23 6 4.8393 5.2057 1.4183 24 17 5.5892 6.7695 1.4946 25 6 5.3360 4.2412 0.5597 26 6 4.7344 2.9985 0.4946 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3557 2.1332 0.0403 31 1 2.6595 1.3806 -0.9094 32 1 3.7220 -0.4903 2.9730 33 1 2.8090 -1.2535 1.6494 34 1 4.9263 -2.1060 0.6804 35 1 5.8394 -1.3427 2.0040 36 1 4.6074 -2.7255 3.6523 37 1 3.6941 -3.4892 2.3292 38 1 5.8118 -4.3416 1.3603 39 1 6.7246 -3.5775 2.6836 40 1 5.4930 -4.9600 4.3325 41 1 4.5799 -5.7246 3.0096 42 1 5.6518 -8.5573 5.1046 43 1 2.2926 3.4584 2.7764 44 1 3.3622 5.6730 2.8930 45 1 6.1906 4.4608 -0.0630 46 1 5.1192 2.2470 -0.1789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:45 Heat of formation + Delta-G solvation = -45.633612 kcal Electronic energy + Delta-G solvation = -23384.293752 eV Core-core repulsion = 19877.929661 eV Total energy + Delta-G solvation = -3506.364091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.13031 -38.39311 -36.78673 -35.61443 -34.69091 -32.96533 -32.09300 -31.44257 -30.19345 -28.46280 -26.40206 -24.25075 -23.56167 -22.98902 -21.40866 -20.99843 -20.07831 -19.94229 -17.58452 -16.97006 -16.31475 -16.17278 -16.02392 -15.23948 -15.21557 -14.65422 -14.46829 -14.33639 -13.86461 -13.84382 -13.53109 -13.43182 -12.80095 -12.67125 -12.41340 -12.15081 -12.00947 -11.86876 -11.75467 -11.58213 -11.37169 -11.18765 -11.04088 -10.93984 -10.92699 -10.48734 -10.44253 -10.37111 -9.98089 -9.63323 -9.43466 -9.37553 -9.25250 -9.00282 -8.91426 -8.32807 -5.97873 -3.99767 0.71841 0.93292 1.76826 2.01852 3.19137 3.32113 3.39425 3.43919 3.48972 4.28185 4.41374 4.47991 4.52218 4.70084 4.75341 4.90650 4.96590 5.01984 5.10566 5.14684 5.26960 5.28564 5.32268 5.37860 5.48843 5.57727 5.65806 5.68110 5.72070 5.76092 5.83659 5.89189 6.07215 6.13920 6.27883 6.37936 6.41281 6.42561 6.48400 6.52438 6.82143 6.95955 7.11657 7.18937 7.71365 7.86561 8.03242 8.46593 9.07991 9.64150 11.13532 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.001916 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.509392 B =14610.853067 C =16032.234242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C -0.104 4.104 4 C 0.134 3.866 5 H 0.074 0.926 6 O -0.375 6.375 7 C 0.060 3.940 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.084 4.084 21 C -0.099 4.099 22 C -0.113 4.113 23 C -0.034 4.034 24 Cl -0.075 7.075 25 C -0.113 4.113 26 C -0.077 4.077 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 28.252 -8.440 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C -0.142 4.142 4 C 0.076 3.924 5 H 0.092 0.908 6 O -0.294 6.294 7 C -0.016 4.016 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.061 4.061 24 Cl -0.046 7.046 25 C -0.132 4.132 26 C -0.095 4.095 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.751 28.276 -8.432 30.777 hybrid contribution 0.557 -0.667 0.180 0.888 sum -8.194 27.609 -8.252 29.958 Atomic orbital electron populations 1.23882 0.95876 1.01891 1.01420 1.23005 0.95947 0.98694 0.99647 1.21210 0.98104 0.95927 0.98929 1.20807 0.88462 0.85091 0.98047 0.90835 1.87921 1.46917 1.28295 1.66258 1.22819 0.99270 0.86032 0.93515 1.21597 0.97616 0.94793 1.01356 1.21587 1.00326 0.94640 0.98772 1.21610 0.96043 0.96541 1.00502 1.19118 0.96897 0.91209 0.94560 1.21333 1.08038 1.01972 1.24359 0.92670 1.25045 0.95998 0.98289 0.95308 1.69980 1.31807 1.24301 1.27528 0.86548 0.82336 0.81263 0.77936 1.19740 1.21041 1.21041 1.20036 0.96641 0.95225 0.96582 1.20969 1.00044 0.92513 0.98235 1.20993 0.95236 0.97612 0.99288 1.20984 0.97006 0.87626 1.00459 1.98375 1.81713 1.26733 1.97748 1.21117 1.00650 0.92679 0.98705 1.21023 0.94499 0.95631 0.98353 0.88730 0.88301 0.86711 0.90566 0.89868 0.93405 0.92990 0.91439 0.91459 0.92451 0.92457 0.93420 0.93419 0.96703 0.96707 0.93126 0.85036 0.84866 0.84826 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.32 29.01 0.42 -1.11 16 2 C -0.16 -1.35 8.55 -36.02 -0.31 -1.66 16 3 C -0.10 -0.84 5.35 -27.88 -0.15 -0.99 16 4 C 0.13 1.21 2.45 -27.88 -0.07 1.14 16 5 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 6 O -0.37 -4.25 9.14 -35.23 -0.32 -4.58 16 7 C 0.06 0.70 5.43 37.16 0.20 0.90 16 8 C -0.12 -1.60 5.58 -26.73 -0.15 -1.75 16 9 C -0.12 -1.91 5.21 -26.73 -0.14 -2.05 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.08 -0.75 4.97 -104.62 -0.52 -1.27 16 21 C -0.10 -0.77 9.67 -39.59 -0.38 -1.15 16 22 C -0.11 -0.88 9.83 -39.55 -0.39 -1.27 16 23 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 24 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.12 16 25 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 26 C -0.08 -0.69 9.35 -39.59 -0.37 -1.06 16 27 H 0.09 0.63 7.83 -52.49 -0.41 0.22 16 28 H 0.10 0.74 8.06 -52.48 -0.42 0.31 16 29 H 0.12 1.11 6.63 -52.49 -0.35 0.76 16 30 H 0.08 0.53 7.79 -51.93 -0.40 0.12 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.55 8.12 -51.93 -0.42 0.12 16 33 H 0.05 0.57 6.08 -51.93 -0.32 0.26 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.13 0.75 8.04 -52.48 -0.42 0.33 16 44 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.14 1.21 7.78 -52.49 -0.41 0.80 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -30.74 397.12 -11.05 -41.79 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.74 Total: -3.48 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -3.18 Total: -27.96 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.32 Total: -4.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.74 -11.05 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.843 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds