Wall clock time and date at job start Sat Apr 11 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50712 * 119.99276 * 2 1 4 4 C 1.53001 * 109.46630 * 122.24620 * 3 2 1 5 5 H 1.09003 * 109.47160 * 305.28201 * 4 3 2 6 6 O 1.42899 * 109.47520 * 65.28817 * 4 3 2 7 7 C 1.42898 * 113.99679 * 256.91559 * 6 4 3 8 8 C 1.53005 * 109.46835 * 180.11443 * 7 6 4 9 9 C 1.53005 * 109.47169 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47160 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47160 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47089 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99775 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99762 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99948 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47076 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47082 * 120.00279 * 16 14 12 19 19 H 1.48497 * 109.47280 * 240.00339 * 16 14 12 20 20 C 1.50696 * 109.46771 * 185.28625 * 4 3 2 21 21 C 1.38245 * 119.99085 * 99.99956 * 20 4 3 22 22 C 1.38212 * 120.01897 * 180.02562 * 21 20 4 23 23 C 1.38351 * 119.98195 * 0.25924 * 22 21 20 24 24 Cl 1.73600 * 120.00907 * 179.69683 * 23 22 21 25 25 C 1.38353 * 119.97797 * 359.46303 * 23 22 21 26 26 C 1.38215 * 119.98234 * 0.55888 * 25 23 22 27 27 H 1.07990 * 120.00578 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99254 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00844 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46905 * 2.24613 * 3 2 1 31 31 H 1.08998 * 109.46553 * 242.23994 * 3 2 1 32 32 H 1.08999 * 109.47394 * 300.11441 * 7 6 4 33 33 H 1.08998 * 109.47527 * 60.11597 * 7 6 4 34 34 H 1.08990 * 109.47534 * 299.99724 * 8 7 6 35 35 H 1.09005 * 109.47154 * 60.00126 * 8 7 6 36 36 H 1.09007 * 109.47033 * 300.00327 * 9 8 7 37 37 H 1.08995 * 109.47154 * 59.99593 * 9 8 7 38 38 H 1.08995 * 109.46887 * 299.99640 * 10 9 8 39 39 H 1.08998 * 109.47151 * 59.99795 * 10 9 8 40 40 H 1.09001 * 109.46878 * 300.00517 * 11 10 9 41 41 H 1.09005 * 109.46876 * 59.99826 * 11 10 9 42 42 H 0.97003 * 119.99515 * 179.97438 * 15 14 12 43 43 H 1.08008 * 119.99046 * 0.02562 * 21 20 4 44 44 H 1.08003 * 120.00860 * 179.97438 * 22 21 20 45 45 H 1.07994 * 120.00727 * 180.25646 * 25 23 22 46 46 H 1.07999 * 119.99350 * 179.72520 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 2.9849 1.3621 1.2201 5 1 2.4009 1.1928 2.1247 6 8 3.9896 0.3524 1.1057 7 6 3.7576 -0.7939 1.9268 8 6 4.8908 -1.8023 1.7266 9 6 4.6427 -3.0295 2.6061 10 6 5.7762 -4.0376 2.4064 11 6 5.5285 -5.2644 3.2865 12 6 6.6445 -6.2576 3.0893 13 1 7.4502 -6.0358 2.4051 14 6 6.6377 -7.4491 3.7832 15 7 5.6568 -7.7189 4.6167 16 14 8.0214 -8.6799 3.5394 17 1 8.9953 -8.1414 2.5561 18 1 8.7069 -8.9172 4.8352 19 1 7.4625 -9.9593 3.0334 20 6 3.6404 2.7172 1.2916 21 6 3.1473 3.6787 2.1539 22 6 3.7478 4.9218 2.2196 23 6 4.8393 5.2057 1.4183 24 17 5.5892 6.7695 1.4946 25 6 5.3360 4.2412 0.5597 26 6 4.7344 2.9985 0.4946 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3557 2.1332 0.0403 31 1 2.6595 1.3806 -0.9094 32 1 3.7220 -0.4903 2.9730 33 1 2.8090 -1.2535 1.6494 34 1 4.9263 -2.1060 0.6804 35 1 5.8394 -1.3427 2.0040 36 1 4.6074 -2.7255 3.6523 37 1 3.6941 -3.4892 2.3292 38 1 5.8118 -4.3416 1.3603 39 1 6.7246 -3.5775 2.6836 40 1 5.4930 -4.9600 4.3325 41 1 4.5799 -5.7246 3.0096 42 1 5.6518 -8.5573 5.1046 43 1 2.2926 3.4584 2.7764 44 1 3.3622 5.6730 2.8930 45 1 6.1906 4.4608 -0.0630 46 1 5.1192 2.2470 -0.1789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:44 Heat of formation + Delta-G solvation = -58.422656 kcal Electronic energy + Delta-G solvation = -23384.848327 eV Core-core repulsion = 19877.929661 eV Total energy + Delta-G solvation = -3506.918666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78896 -39.15777 -37.46947 -36.94994 -35.64564 -34.74305 -33.02470 -32.06986 -31.69302 -29.18703 -28.03067 -25.30957 -24.71097 -23.76566 -22.45207 -22.01937 -21.62904 -20.65893 -18.45050 -18.20010 -17.70117 -17.18424 -16.72352 -16.50427 -16.23627 -15.91952 -15.44528 -15.28642 -14.64902 -14.54205 -14.44912 -14.43151 -14.09574 -13.94712 -13.61587 -13.33973 -13.11085 -12.93940 -12.79944 -12.67595 -12.55678 -12.38809 -12.27691 -12.09361 -11.96367 -11.81294 -11.65092 -11.62993 -11.34076 -11.29625 -10.96723 -10.75020 -10.55776 -10.11718 -10.00387 -9.56803 -8.20380 -6.31321 0.08253 0.32447 1.14008 1.39003 1.39408 1.39591 1.53266 2.40435 2.50682 2.74071 3.12347 3.62146 3.81221 3.94607 4.00646 4.03213 4.12644 4.16698 4.29352 4.37109 4.39545 4.41463 4.47191 4.50011 4.50972 4.70165 4.75993 4.77623 4.90500 4.97324 5.00671 5.04889 5.08881 5.12662 5.22660 5.26204 5.31384 5.32662 5.40262 5.50318 5.56491 5.76185 5.79024 5.80886 5.86519 5.87578 6.26397 6.30821 6.86315 7.37835 8.91552 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.001916 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.509392 B =14610.853067 C =16032.234242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C -0.098 4.098 4 C 0.134 3.866 5 H 0.082 0.918 6 O -0.387 6.387 7 C 0.066 3.934 8 C -0.107 4.107 9 C -0.106 4.106 10 C -0.100 4.100 11 C 0.021 3.979 12 C -0.544 4.544 13 H 0.058 0.942 14 C -0.004 4.004 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.093 4.093 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.045 4.045 24 Cl -0.075 7.075 25 C -0.120 4.120 26 C -0.088 4.088 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.048 0.952 40 H -0.009 1.009 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.142 0.858 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 29.148 -8.785 31.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.188 4.188 3 C -0.135 4.135 4 C 0.076 3.924 5 H 0.100 0.900 6 O -0.307 6.307 7 C -0.010 4.010 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.137 4.137 11 C -0.016 4.016 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.094 4.094 21 C -0.117 4.117 22 C -0.133 4.133 23 C -0.071 4.071 24 Cl -0.046 7.046 25 C -0.138 4.138 26 C -0.106 4.106 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.009 0.991 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.160 0.840 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.883 29.190 -8.789 31.752 hybrid contribution 0.553 -0.920 0.294 1.113 sum -8.330 28.270 -8.494 30.672 Atomic orbital electron populations 1.24040 0.95628 1.02712 0.99970 1.22984 0.96328 0.98473 1.01015 1.21154 0.98021 0.96099 0.98221 1.20924 0.88134 0.84493 0.98833 0.89997 1.87889 1.48036 1.28546 1.66202 1.22652 0.98495 0.85982 0.93904 1.21417 0.98439 0.94078 1.00534 1.21430 0.98635 0.94821 0.99527 1.21444 0.97756 0.95297 0.99217 1.19054 0.95248 0.93103 0.94216 1.21780 1.08823 1.02994 1.24606 0.92342 1.26016 0.98753 1.00502 0.94836 1.70105 1.33794 1.25124 1.28363 0.85390 0.78959 0.78413 0.78235 1.18658 1.20306 1.20262 1.20117 0.96819 0.95407 0.97042 1.21214 1.00461 0.92076 0.97910 1.21246 0.94822 0.98094 0.99168 1.21141 0.97469 0.87688 1.00832 1.98372 1.81777 1.26685 1.97758 1.21243 1.01003 0.92618 0.98974 1.21071 0.94988 0.95820 0.98743 0.87275 0.88143 0.88051 0.89100 0.90508 0.92930 0.92231 0.91395 0.91725 0.92443 0.92256 0.93179 0.93314 0.99088 0.99004 0.92779 0.82872 0.83185 0.84023 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 67.78 0.97 -1.64 16 2 C -0.17 -2.76 8.55 25.65 0.22 -2.54 16 3 C -0.10 -1.44 5.35 29.85 0.16 -1.28 16 4 C 0.13 2.21 2.45 29.85 0.07 2.29 16 5 H 0.08 1.21 7.53 -2.39 -0.02 1.20 16 6 O -0.39 -8.38 9.14 -148.98 -1.36 -9.74 16 7 C 0.07 1.46 5.43 71.98 0.39 1.85 16 8 C -0.11 -2.85 5.58 30.60 0.17 -2.68 16 9 C -0.11 -3.48 5.21 30.59 0.16 -3.32 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C 0.02 1.12 4.97 29.85 0.15 1.27 16 12 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 15 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 16 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C -0.09 -1.52 4.97 -19.86 -0.10 -1.62 16 21 C -0.10 -1.32 9.67 22.27 0.22 -1.10 16 22 C -0.11 -1.58 9.83 22.29 0.22 -1.36 16 23 C -0.04 -0.72 6.32 22.32 0.14 -0.58 16 24 Cl -0.07 -1.16 28.96 -2.72 -0.08 -1.24 16 25 C -0.12 -1.96 9.83 22.29 0.22 -1.74 16 26 C -0.09 -1.52 9.35 22.27 0.21 -1.32 16 27 H 0.11 1.19 7.83 -2.92 -0.02 1.17 16 28 H 0.10 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.10 1.91 6.63 -2.91 -0.02 1.89 16 30 H 0.09 1.06 7.79 -2.39 -0.02 1.04 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 33 H 0.06 1.24 6.08 -2.39 -0.01 1.22 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H -0.01 -0.49 8.14 -2.38 -0.02 -0.50 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.15 1.31 8.04 -2.91 -0.02 1.29 16 44 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 46 H 0.13 2.35 7.78 -2.91 -0.02 2.33 16 Total: -1.00 -65.70 397.12 5.84 -59.86 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.92 Total: 10.43 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 4.05 Total: -48.96 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.28 Total: -57.26 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.36 Total: -9.74 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -65.70 5.84 -59.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.437 kcal (2) G-P(sol) polarization free energy of solvation -65.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds