Wall clock time and date at job start Sat Apr 11 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 C 1.50696 * 109.47378 * 119.99785 * 2 1 3 5 5 C 1.38327 * 119.40627 * 275.00703 * 4 2 1 6 6 C 1.38364 * 119.46008 * 180.02562 * 5 4 2 7 7 C 1.39989 * 118.34348 * 359.97438 * 6 5 4 8 8 C 1.43205 * 120.60023 * 180.02562 * 7 6 5 9 9 N 6.80282 * 109.56756 * 121.09887 * 2 1 3 10 10 C 1.40320 * 118.80206 * 0.02562 * 7 6 5 11 11 O 1.35476 * 119.79705 * 179.97438 * 10 7 6 12 12 C 1.42905 * 116.99660 * 180.02562 * 11 10 7 13 13 H 1.09004 * 109.47054 * 329.99751 * 12 11 10 14 14 C 1.50703 * 109.47264 * 89.99785 * 12 11 10 15 15 H 1.07996 * 119.99751 * 239.99949 * 14 12 11 16 16 C 1.37880 * 119.99788 * 60.00017 * 14 12 11 17 17 N 1.31510 * 119.99893 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99568 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47539 * 60.00186 * 18 16 14 20 20 H 1.48505 * 109.46814 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47148 * 299.99652 * 18 16 14 22 22 C 1.50699 * 109.46972 * 209.99907 * 12 11 10 23 23 C 1.38236 * 120.00179 * 324.72576 * 22 12 11 24 24 C 1.38234 * 120.00199 * 179.79076 * 23 22 12 25 25 C 1.38231 * 119.99937 * 0.43643 * 24 23 22 26 26 C 1.38240 * 120.00042 * 359.81635 * 25 24 23 27 27 C 1.38234 * 119.99895 * 144.99515 * 22 12 11 28 28 N 1.31914 * 119.40626 * 95.27361 * 4 2 1 29 29 H 1.08999 * 109.47159 * 60.00317 * 1 2 3 30 30 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47523 * 299.99829 * 1 2 3 32 32 H 1.09005 * 109.47283 * 240.00215 * 2 1 3 33 33 H 1.09002 * 109.47570 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46953 * 299.99809 * 3 2 1 35 35 H 1.08996 * 109.47387 * 59.99601 * 3 2 1 36 36 H 1.08002 * 120.26968 * 0.03718 * 5 4 2 37 37 H 1.08001 * 120.82841 * 179.97438 * 6 5 4 38 38 H 0.97000 * 119.99919 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.99903 * 359.97438 * 23 22 12 40 40 H 1.07998 * 120.00266 * 180.27960 * 24 23 22 41 41 H 1.07998 * 120.00563 * 179.83379 * 25 24 23 42 42 H 1.08000 * 120.00574 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.00034 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.1597 -0.0084 2.4155 6 6 2.6213 -0.6593 3.5458 7 6 2.9446 -2.0177 3.4451 8 6 3.4262 -2.7389 4.5847 9 7 3.8084 -3.3108 5.4887 10 6 2.7882 -2.6598 2.2072 11 8 3.0955 -3.9737 2.0869 12 6 2.9143 -4.5670 0.7995 13 1 2.1015 -4.0617 0.2777 14 6 4.1850 -4.4317 0.0006 15 1 4.1793 -3.8937 -0.9358 16 6 5.3546 -4.9949 0.4652 17 7 5.3615 -5.6496 1.6057 18 14 6.9297 -4.8265 -0.5247 19 1 7.2628 -3.3883 -0.6844 20 1 8.0369 -5.5156 0.1858 21 1 6.7417 -5.4427 -1.8628 22 6 2.5762 -6.0265 0.9621 23 6 3.1476 -6.7585 1.9861 24 6 2.8341 -8.0962 2.1380 25 6 1.9561 -8.7043 1.2604 26 6 1.3886 -7.9736 0.2332 27 6 1.6988 -6.6348 0.0840 28 7 2.3479 -1.9891 1.1567 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4427 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.9006 1.0393 2.4583 37 1 2.7296 -0.1326 4.4825 38 1 6.1842 -6.0461 1.9324 39 1 3.8368 -6.2845 2.6694 40 1 3.2771 -8.6670 2.9407 41 1 1.7132 -9.7501 1.3773 42 1 0.7030 -8.4487 -0.4528 43 1 1.2554 -6.0639 -0.7184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226353664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:47 Heat of formation + Delta-G solvation = 52.069890 kcal Electronic energy + Delta-G solvation = -26851.686276 eV Core-core repulsion = 23248.451433 eV Total energy + Delta-G solvation = -3603.234843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33231 -38.44510 -37.16697 -36.15032 -34.86695 -33.12059 -32.09537 -30.76535 -29.77679 -29.31774 -27.18790 -26.95606 -24.54164 -23.71368 -22.40008 -21.46932 -20.57563 -20.24870 -18.66173 -17.58913 -16.57750 -16.22955 -15.64968 -15.19300 -14.95485 -14.60114 -14.22246 -13.99058 -13.72652 -13.46155 -13.35319 -13.16584 -13.04268 -12.87081 -12.47831 -12.36437 -12.20502 -12.15853 -11.87118 -11.72617 -11.58393 -11.50851 -11.17742 -11.06285 -11.01698 -10.84765 -10.63496 -10.50223 -10.12463 -9.61349 -9.53939 -9.21677 -9.00268 -8.85145 -7.90443 -7.73399 -7.54675 -6.10328 -4.43958 1.06189 1.73084 2.38649 2.55124 3.19951 3.23818 3.25765 3.27441 3.48754 3.90546 4.23137 4.27274 4.34348 4.56848 4.81730 4.93593 5.08163 5.14665 5.22136 5.30310 5.38378 5.55200 5.61309 5.76571 5.77462 5.80377 5.86765 5.90178 5.98383 6.01963 6.13840 6.26713 6.29684 6.31176 6.36133 6.54199 6.66877 6.78083 6.83536 7.01363 7.23068 7.42874 7.54436 7.73333 7.88089 7.93945 8.05972 8.20252 8.24478 8.43137 8.73356 9.31254 10.73275 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.004825 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.529929 B = 5801.534213 C = 5919.930904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C -0.145 4.145 4 C 0.208 3.792 5 C -0.242 4.242 6 C 0.007 3.993 7 C -0.139 4.139 8 C 0.279 3.721 9 N -0.432 5.432 10 C 0.408 3.592 11 O -0.272 6.272 12 C 0.241 3.759 13 H 0.058 0.942 14 C -0.527 4.527 15 H 0.070 0.930 16 C 0.079 3.921 17 N -0.847 5.847 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.049 4.049 23 C -0.048 4.048 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.122 4.122 28 N -0.527 5.527 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.267 0.733 39 H 0.162 0.838 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 10.180 -1.502 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 C -0.203 4.203 4 C 0.068 3.932 5 C -0.263 4.263 6 C -0.020 4.020 7 C -0.146 4.146 8 C -0.036 4.036 9 N -0.109 5.109 10 C 0.225 3.775 11 O -0.175 6.175 12 C 0.188 3.812 13 H 0.076 0.924 14 C -0.563 4.563 15 H 0.088 0.912 16 C -0.128 4.128 17 N -0.482 5.482 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.050 4.050 23 C -0.067 4.067 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.167 4.167 27 C -0.140 4.140 28 N -0.251 5.251 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.077 0.923 39 H 0.179 0.821 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.630 8.451 -0.580 11.400 hybrid contribution 1.073 0.415 -0.431 1.229 sum -6.557 8.866 -1.011 11.073 Atomic orbital electron populations 1.21776 0.93564 1.02512 1.01836 1.20132 0.96154 0.95346 0.95526 1.21909 1.01587 0.94797 1.01994 1.21111 0.89159 0.88704 0.94268 1.21499 1.09885 1.01741 0.93186 1.21281 0.91083 0.90774 0.98871 1.15989 1.15765 0.93765 0.89089 1.25066 0.93002 0.93157 0.92358 1.81120 1.10108 1.07627 1.12022 1.19948 0.83986 0.86809 0.86732 1.86542 1.75816 1.15607 1.39487 1.19054 0.97146 0.86263 0.78736 0.92401 1.21278 0.92522 1.35228 1.07318 0.91209 1.25110 0.99485 0.93345 0.94869 1.69788 1.27214 1.32253 1.18959 0.86567 0.82222 0.78571 0.80244 1.19942 1.20975 1.19891 1.19865 0.93980 0.96532 0.94606 1.21882 0.94001 0.92610 0.98192 1.21147 0.99681 0.96367 0.99787 1.20853 0.99699 0.98542 0.96956 1.20715 1.02176 0.94502 0.99263 1.20749 0.99011 0.94847 0.99437 1.67423 1.18182 1.09374 1.30170 0.92064 0.92098 0.92504 0.88763 0.92199 0.92093 0.92122 0.84443 0.84285 0.92260 0.82090 0.87920 0.88102 0.87764 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 2 C -0.05 -0.60 3.23 -91.77 -0.30 -0.90 16 3 C -0.15 -1.28 8.61 37.16 0.32 -0.96 16 4 C 0.21 3.04 5.79 -82.53 -0.48 2.56 16 5 C -0.24 -2.98 9.15 -39.50 -0.36 -3.34 16 6 C 0.01 0.10 9.90 -38.88 -0.39 -0.29 16 7 C -0.14 -2.50 5.77 -106.53 -0.61 -3.11 16 8 C 0.28 5.52 14.91 -22.47 -0.34 5.19 16 9 N -0.43 -9.18 18.54 41.84 0.78 -8.40 16 10 C 0.41 8.43 7.46 -16.61 -0.12 8.30 16 11 O -0.27 -6.53 7.75 -18.12 -0.14 -6.67 16 12 C 0.24 5.78 2.35 -29.03 -0.07 5.72 16 13 H 0.06 1.34 6.90 -51.93 -0.36 0.98 16 14 C -0.53 -13.60 8.89 -34.44 -0.31 -13.91 16 15 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 16 C 0.08 2.05 5.24 -17.82 -0.09 1.95 16 17 N -0.85 -22.51 8.50 55.43 0.47 -22.04 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.05 -1.16 4.80 -104.62 -0.50 -1.66 16 23 C -0.05 -1.14 7.46 -39.58 -0.30 -1.44 16 24 C -0.15 -3.21 10.05 -39.59 -0.40 -3.60 16 25 C -0.14 -2.74 10.05 -39.58 -0.40 -3.13 16 26 C -0.15 -2.84 10.05 -39.58 -0.40 -3.23 16 27 C -0.12 -2.57 9.68 -39.58 -0.38 -2.95 16 28 N -0.53 -9.91 8.55 -9.20 -0.08 -9.99 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.45 6.47 -51.93 -0.34 0.11 16 36 H 0.14 1.23 6.28 -52.49 -0.33 0.90 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.16 4.23 5.50 -52.48 -0.29 3.94 16 40 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -29.05 367.17 -8.74 -37.80 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.51 Total: 3.98 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -4.77 Total: -15.82 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.17 Total: -40.42 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.14 Total: -6.67 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.05 -8.74 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226353664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.866 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds