Wall clock time and date at job start Sat Apr 11 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 C 1.50696 * 109.47378 * 119.99785 * 2 1 3 5 5 C 1.38327 * 119.40627 * 275.00703 * 4 2 1 6 6 C 1.38364 * 119.46008 * 180.02562 * 5 4 2 7 7 C 1.39989 * 118.34348 * 359.97438 * 6 5 4 8 8 C 1.43205 * 120.60023 * 180.02562 * 7 6 5 9 9 N 6.80282 * 109.56756 * 121.09887 * 2 1 3 10 10 C 1.40320 * 118.80206 * 0.02562 * 7 6 5 11 11 O 1.35476 * 119.79705 * 179.97438 * 10 7 6 12 12 C 1.42905 * 116.99660 * 180.02562 * 11 10 7 13 13 H 1.09004 * 109.47054 * 329.99751 * 12 11 10 14 14 C 1.50703 * 109.47264 * 89.99785 * 12 11 10 15 15 H 1.07996 * 119.99751 * 239.99949 * 14 12 11 16 16 C 1.37880 * 119.99788 * 60.00017 * 14 12 11 17 17 N 1.31510 * 119.99893 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99568 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47539 * 60.00186 * 18 16 14 20 20 H 1.48505 * 109.46814 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47148 * 299.99652 * 18 16 14 22 22 C 1.50699 * 109.46972 * 209.99907 * 12 11 10 23 23 C 1.38236 * 120.00179 * 324.72576 * 22 12 11 24 24 C 1.38234 * 120.00199 * 179.79076 * 23 22 12 25 25 C 1.38231 * 119.99937 * 0.43643 * 24 23 22 26 26 C 1.38240 * 120.00042 * 359.81635 * 25 24 23 27 27 C 1.38234 * 119.99895 * 144.99515 * 22 12 11 28 28 N 1.31914 * 119.40626 * 95.27361 * 4 2 1 29 29 H 1.08999 * 109.47159 * 60.00317 * 1 2 3 30 30 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47523 * 299.99829 * 1 2 3 32 32 H 1.09005 * 109.47283 * 240.00215 * 2 1 3 33 33 H 1.09002 * 109.47570 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46953 * 299.99809 * 3 2 1 35 35 H 1.08996 * 109.47387 * 59.99601 * 3 2 1 36 36 H 1.08002 * 120.26968 * 0.03718 * 5 4 2 37 37 H 1.08001 * 120.82841 * 179.97438 * 6 5 4 38 38 H 0.97000 * 119.99919 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.99903 * 359.97438 * 23 22 12 40 40 H 1.07998 * 120.00266 * 180.27960 * 24 23 22 41 41 H 1.07998 * 120.00563 * 179.83379 * 25 24 23 42 42 H 1.08000 * 120.00574 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.00034 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.1597 -0.0084 2.4155 6 6 2.6213 -0.6593 3.5458 7 6 2.9446 -2.0177 3.4451 8 6 3.4262 -2.7389 4.5847 9 7 3.8084 -3.3108 5.4887 10 6 2.7882 -2.6598 2.2072 11 8 3.0955 -3.9737 2.0869 12 6 2.9143 -4.5670 0.7995 13 1 2.1015 -4.0617 0.2777 14 6 4.1850 -4.4317 0.0006 15 1 4.1793 -3.8937 -0.9358 16 6 5.3546 -4.9949 0.4652 17 7 5.3615 -5.6496 1.6057 18 14 6.9297 -4.8265 -0.5247 19 1 7.2628 -3.3883 -0.6844 20 1 8.0369 -5.5156 0.1858 21 1 6.7417 -5.4427 -1.8628 22 6 2.5762 -6.0265 0.9621 23 6 3.1476 -6.7585 1.9861 24 6 2.8341 -8.0962 2.1380 25 6 1.9561 -8.7043 1.2604 26 6 1.3886 -7.9736 0.2332 27 6 1.6988 -6.6348 0.0840 28 7 2.3479 -1.9891 1.1567 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4427 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.9006 1.0393 2.4583 37 1 2.7296 -0.1326 4.4825 38 1 6.1842 -6.0461 1.9324 39 1 3.8368 -6.2845 2.6694 40 1 3.2771 -8.6670 2.9407 41 1 1.7132 -9.7501 1.3773 42 1 0.7030 -8.4487 -0.4528 43 1 1.2554 -6.0639 -0.7184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226353664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:47 Heat of formation + Delta-G solvation = 37.118936 kcal Electronic energy + Delta-G solvation = -26852.334598 eV Core-core repulsion = 23248.451433 eV Total energy + Delta-G solvation = -3603.883165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66576 -40.04669 -38.65029 -37.67544 -36.03224 -34.92362 -33.38359 -32.45832 -31.39192 -30.63601 -28.80122 -27.88750 -25.72191 -25.38849 -23.85558 -23.06536 -21.92492 -21.63150 -20.04962 -19.25120 -18.02459 -17.73851 -17.18110 -16.88739 -16.24006 -16.10356 -15.72247 -15.28563 -15.12288 -14.86403 -14.75486 -14.53218 -14.39100 -14.16777 -14.00490 -13.81249 -13.67176 -13.49384 -13.31707 -13.28362 -12.96111 -12.84871 -12.69892 -12.44721 -12.24846 -12.16884 -11.92893 -11.81978 -11.66827 -11.30938 -11.05544 -10.80998 -10.68136 -10.32673 -9.51915 -9.28876 -9.14719 -8.01658 -6.43426 -0.22233 0.50086 0.73403 0.91351 1.34675 1.34956 1.42267 1.68699 2.03087 2.32327 2.44605 2.90559 2.99934 3.13066 3.25110 3.39916 3.83041 4.10248 4.26617 4.28395 4.30704 4.32676 4.36266 4.40721 4.55263 4.64904 4.77466 4.82931 4.94750 4.96801 5.00563 5.05629 5.07579 5.14146 5.17649 5.34163 5.38006 5.48514 5.53788 5.54861 5.59086 5.70129 5.80846 5.95566 6.04901 6.24976 6.43600 6.50144 6.55819 6.90044 7.09636 7.34211 8.76851 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.004825 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.529929 B = 5801.534213 C = 5919.930904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.140 4.140 4 C 0.197 3.803 5 C -0.217 4.217 6 C 0.024 3.976 7 C -0.160 4.160 8 C 0.291 3.709 9 N -0.471 5.471 10 C 0.373 3.627 11 O -0.302 6.302 12 C 0.250 3.750 13 H 0.051 0.949 14 C -0.542 4.542 15 H 0.059 0.941 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.947 3.053 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.269 1.269 22 C -0.076 4.076 23 C -0.070 4.070 24 C -0.162 4.162 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.134 4.134 28 N -0.556 5.556 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.188 0.812 37 H 0.182 0.818 38 H 0.260 0.740 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 12.089 -2.218 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 C -0.197 4.197 4 C 0.057 3.943 5 C -0.236 4.236 6 C -0.003 4.003 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.149 5.149 10 C 0.191 3.809 11 O -0.206 6.206 12 C 0.196 3.804 13 H 0.069 0.931 14 C -0.578 4.578 15 H 0.077 0.923 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.773 3.227 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.077 4.077 23 C -0.089 4.089 24 C -0.181 4.181 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.152 4.152 28 N -0.280 5.280 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.205 0.795 37 H 0.199 0.801 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.273 10.392 -1.301 13.988 hybrid contribution 1.427 -0.038 -0.250 1.450 sum -7.845 10.353 -1.551 13.082 Atomic orbital electron populations 1.21758 0.91974 1.01645 1.03796 1.20262 0.97344 0.96566 0.93075 1.21905 1.00953 0.92728 1.04149 1.21887 0.88161 0.87565 0.96655 1.22028 1.06720 1.03530 0.91366 1.21796 0.88899 0.88589 1.01046 1.16257 1.17431 0.95606 0.87458 1.25476 0.92095 0.92519 0.92237 1.81100 1.11733 1.08513 1.13529 1.20251 0.86123 0.86144 0.88368 1.86443 1.77504 1.17807 1.38806 1.18819 0.95930 0.86772 0.78852 0.93130 1.21414 0.93870 1.35313 1.07248 0.92312 1.25713 1.01732 0.93424 0.95729 1.70025 1.27009 1.33008 1.19843 0.85790 0.79408 0.78366 0.79182 1.19817 1.20998 1.19427 1.20046 0.95460 0.96536 0.95637 1.21628 0.94828 0.94007 0.98468 1.21364 1.00362 0.95451 1.00899 1.21266 0.98052 1.00309 0.95744 1.21171 1.01746 0.93525 0.99392 1.21024 0.98693 0.96176 0.99290 1.67388 1.19051 1.11548 1.30053 0.89935 0.94405 0.90700 0.91044 0.93195 0.90274 0.89703 0.79507 0.80068 0.93014 0.85332 0.86621 0.84203 0.83765 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.18 71.98 0.66 -1.62 16 2 C -0.05 -1.12 3.23 -11.54 -0.04 -1.16 16 3 C -0.14 -1.95 8.61 71.98 0.62 -1.33 16 4 C 0.20 5.49 5.79 42.57 0.25 5.74 16 5 C -0.22 -4.56 9.15 22.32 0.20 -4.35 16 6 C 0.02 0.57 9.90 22.72 0.23 0.80 16 7 C -0.16 -5.84 5.77 -21.10 -0.12 -5.96 16 8 C 0.29 11.92 14.91 88.33 1.32 13.24 16 9 N -0.47 -20.89 18.54 19.01 0.35 -20.54 16 10 C 0.37 16.14 7.46 85.15 0.64 16.77 16 11 O -0.30 -15.48 7.75 -87.76 -0.68 -16.16 16 12 C 0.25 12.75 2.35 29.10 0.07 12.82 16 13 H 0.05 2.52 6.90 -2.38 -0.02 2.51 16 14 C -0.54 -29.46 8.89 25.60 0.23 -29.24 16 15 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 16 C 0.04 2.08 5.24 84.66 0.44 2.52 16 17 N -0.86 -48.53 8.50 21.45 0.18 -48.34 16 18 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 C -0.08 -3.76 4.80 -19.87 -0.10 -3.86 16 23 C -0.07 -3.52 7.46 22.27 0.17 -3.36 16 24 C -0.16 -6.94 10.05 22.27 0.22 -6.72 16 25 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 26 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 27 C -0.13 -5.66 9.68 22.27 0.22 -5.44 16 28 N -0.56 -21.55 8.55 -296.02 -2.53 -24.08 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.77 6.47 -2.39 -0.02 0.76 16 36 H 0.19 2.12 6.28 -2.91 -0.02 2.11 16 37 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.13 7.30 5.50 -2.91 -0.02 7.28 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 41 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -69.86 367.17 5.83 -64.03 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.03 Total: 20.05 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 5.45 Total: -20.73 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -2.00 Total: -92.96 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.68 Total: -16.16 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.86 5.83 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226353664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.149 kcal (2) G-P(sol) polarization free energy of solvation -69.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds