Wall clock time and date at job start Sat Apr 11 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46984 * 2 1 4 4 N 1.31801 * 119.67697 * 270.02457 * 3 2 1 5 5 C 1.32299 * 121.78086 * 180.02562 * 4 3 2 6 6 O 1.35647 * 119.54054 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00128 * 0.02562 * 6 5 4 8 8 C 1.39027 * 120.91652 * 359.97438 * 5 4 3 9 9 C 1.38121 * 119.24807 * 359.76228 * 8 5 4 10 10 C 1.39278 * 119.67442 * 90.00436 * 3 2 1 11 11 C 1.48182 * 120.48477 * 359.97345 * 10 3 2 12 12 C 1.39178 * 120.28716 * 245.02551 * 11 10 3 13 13 C 1.38319 * 120.10462 * 179.97438 * 12 11 10 14 14 C 1.38041 * 120.77078 * 0.02562 * 13 12 11 15 15 C 1.39123 * 120.24566 * 0.02562 * 14 13 12 16 16 N 1.38177 * 132.74214 * 180.02562 * 15 14 13 17 17 H 0.96996 * 124.70229 * 359.95599 * 16 15 14 18 18 C 1.35604 * 110.59288 * 179.97438 * 16 15 14 19 19 C 1.38995 * 109.24552 * 359.97438 * 18 16 15 20 20 C 1.40959 * 126.92349 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99792 * 180.02562 * 20 19 18 22 22 C 1.39677 * 120.00344 * 0.02562 * 20 19 18 23 23 N 1.31077 * 120.00182 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99874 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47434 * 60.00074 * 24 22 20 26 26 H 1.48500 * 109.47247 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47253 * 300.00119 * 24 22 20 28 28 C 1.40206 * 120.27768 * 64.99685 * 11 10 3 29 29 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46873 * 299.99508 * 1 2 3 31 31 H 1.08996 * 109.47313 * 59.99634 * 1 2 3 32 32 H 1.09006 * 109.46647 * 240.00355 * 2 1 3 33 33 H 1.08996 * 109.47313 * 120.00366 * 2 1 3 34 34 H 1.08995 * 109.47627 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.46906 * 300.00180 * 7 6 5 36 36 H 1.09002 * 109.47492 * 59.99397 * 7 6 5 37 37 H 1.08003 * 120.38105 * 180.02562 * 8 5 4 38 38 H 1.07999 * 120.81658 * 180.25039 * 9 8 5 39 39 H 1.08002 * 119.94460 * 0.02562 * 12 11 10 40 40 H 1.08002 * 119.61424 * 179.97438 * 13 12 11 41 41 H 1.08005 * 119.87362 * 179.97438 * 14 13 12 42 42 H 1.08000 * 125.37711 * 180.27154 * 18 16 15 43 43 H 0.96994 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2493 2.0362 -1.1451 5 6 2.6905 3.2825 -1.1937 6 8 2.8988 3.8718 -2.3976 7 6 2.6207 3.0886 -3.5601 8 6 2.9435 3.9966 -0.0280 9 6 2.7246 3.3923 1.1946 10 6 2.2622 2.0708 1.2101 11 6 2.0160 1.3758 2.4955 12 6 1.0192 1.8251 3.3567 13 6 0.7922 1.1731 4.5553 14 6 1.5458 0.0740 4.9151 15 6 2.5488 -0.3943 4.0724 16 7 3.4393 -1.4465 4.1688 17 1 3.4877 -2.0623 4.9166 18 6 4.2365 -1.4985 3.0730 19 6 3.8919 -0.4679 2.2064 20 6 4.4815 -0.1772 0.9595 21 1 4.1235 0.6570 0.3742 22 6 5.5286 -0.9679 0.4807 23 7 5.9628 -1.9806 1.1907 24 14 6.3104 -0.5821 -1.1714 25 1 6.8808 0.7886 -1.1412 26 1 7.3908 -1.5624 -1.4488 27 1 5.2806 -0.6663 -2.2381 28 6 2.7849 0.2596 2.8542 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8294 3.6773 -4.4533 35 1 3.2494 2.1981 -3.5571 36 1 1.5717 2.7926 -3.5564 37 1 3.3031 5.0138 -0.0777 38 1 2.9088 3.9249 2.1159 39 1 0.4214 2.6836 3.0882 40 1 0.0169 1.5288 5.2178 41 1 1.3565 -0.4239 5.8547 42 1 5.0131 -2.2286 2.8988 43 1 6.6897 -2.5299 0.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239777864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:03 Heat of formation + Delta-G solvation = 42.967989 kcal Electronic energy + Delta-G solvation = -27691.773044 eV Core-core repulsion = 24088.143513 eV Total energy + Delta-G solvation = -3603.629531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44353 -39.58989 -37.74320 -35.77088 -33.82856 -33.29722 -32.29867 -30.41745 -29.33409 -28.18969 -27.68256 -26.69749 -24.75055 -23.87852 -22.85549 -21.08873 -20.76249 -20.56480 -19.42611 -17.73631 -17.22109 -16.37122 -15.91534 -15.61385 -15.48900 -14.74021 -14.35530 -14.23325 -14.04774 -13.96740 -13.41963 -13.20680 -12.96677 -12.88714 -12.69255 -12.52373 -12.22298 -11.76704 -11.65239 -11.42500 -11.18613 -11.14704 -11.00123 -10.88184 -10.74000 -10.51928 -10.41506 -10.34361 -9.77297 -9.66309 -9.36455 -9.28612 -9.09830 -8.36198 -7.62617 -7.09907 -6.60448 -6.49583 -3.99409 1.57374 1.76402 2.18727 2.57064 3.12037 3.15600 3.22844 3.44872 4.10258 4.17693 4.25043 4.52285 4.69193 4.71397 5.25291 5.36464 5.43085 5.51515 5.53664 5.62943 5.65787 5.69543 5.80563 5.86529 5.88876 5.92176 5.98704 6.07977 6.27022 6.36784 6.42420 6.47959 6.61008 6.62334 6.76920 6.80681 6.95569 7.05268 7.11179 7.17882 7.33317 7.44748 7.56893 7.67820 7.83456 8.00175 8.29277 8.42821 8.65657 9.01082 9.14190 9.18311 10.48037 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.007243 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.444046 B = 3865.058334 C = 5729.976373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C 0.215 3.785 4 N -0.540 5.540 5 C 0.308 3.692 6 O -0.315 6.315 7 C 0.042 3.958 8 C -0.202 4.202 9 C -0.034 4.034 10 C -0.103 4.103 11 C 0.014 3.986 12 C -0.172 4.172 13 C -0.115 4.115 14 C -0.148 4.148 15 C 0.084 3.916 16 N -0.591 5.591 17 H 0.394 0.606 18 C -0.091 4.091 19 C 0.018 3.982 20 C -0.408 4.408 21 H 0.074 0.926 22 C 0.059 3.941 23 N -0.833 5.833 24 Si 0.902 3.098 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.267 1.267 28 C -0.111 4.111 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.192 0.808 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 5.107 -0.713 8.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C 0.078 3.922 4 N -0.263 5.263 5 C 0.130 3.870 6 O -0.222 6.222 7 C -0.053 4.053 8 C -0.223 4.223 9 C -0.059 4.059 10 C -0.105 4.105 11 C 0.013 3.987 12 C -0.193 4.193 13 C -0.135 4.135 14 C -0.170 4.170 15 C -0.027 4.027 16 N -0.192 5.192 17 H 0.227 0.773 18 C -0.216 4.216 19 C 0.013 3.987 20 C -0.440 4.440 21 H 0.092 0.908 22 C -0.151 4.151 23 N -0.464 5.464 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.192 1.192 28 C -0.118 4.118 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.208 0.792 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.743 4.649 -1.623 8.349 hybrid contribution 0.722 0.134 0.188 0.759 sum -6.020 4.783 -1.435 7.822 Atomic orbital electron populations 1.21676 0.95324 1.01425 1.01329 1.20718 0.94866 0.90572 1.05672 1.20862 0.90357 0.95230 0.85775 1.67046 1.19041 1.09049 1.31193 1.19752 0.92959 0.88660 0.85612 1.86167 1.82571 1.41090 1.12415 1.22759 1.01550 0.96189 0.84837 1.20778 1.09497 1.01882 0.90137 1.21383 0.93824 0.93522 0.97150 1.19410 1.03155 0.93968 0.93962 1.17746 0.95344 0.93991 0.91654 1.20528 1.00858 1.02210 0.95699 1.20290 0.99933 0.96423 0.96826 1.19847 0.98268 0.99793 0.99110 1.18148 0.95139 0.92478 0.96922 1.41585 1.31196 1.26272 1.20131 0.77268 1.23433 1.02960 1.07190 0.87969 1.17996 0.93054 0.93240 0.94438 1.18808 1.12839 1.11220 1.01164 0.90814 1.25537 0.96644 0.94551 0.98385 1.69427 1.24599 1.15409 1.36996 0.86418 0.79091 0.78806 0.82873 1.19568 1.20648 1.19184 1.19308 1.00019 0.96938 0.95550 0.92488 0.92653 0.93389 0.90601 0.87113 0.89290 0.92393 0.92555 0.84826 0.84522 0.87668 0.87437 0.88148 0.79154 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.16 0.37 -1.92 16 2 C -0.08 -1.59 4.95 -27.88 -0.14 -1.73 16 3 C 0.21 4.34 3.90 -82.22 -0.32 4.02 16 4 N -0.54 -10.75 9.10 -9.26 -0.08 -10.84 16 5 C 0.31 5.75 7.49 -17.06 -0.13 5.62 16 6 O -0.31 -5.30 10.47 -18.64 -0.20 -5.50 16 7 C 0.04 0.58 10.38 101.05 1.05 1.63 16 8 C -0.20 -3.47 10.03 -39.33 -0.39 -3.86 16 9 C -0.03 -0.60 9.89 -38.96 -0.39 -0.98 16 10 C -0.10 -2.04 4.33 -104.76 -0.45 -2.50 16 11 C 0.01 0.28 4.65 -104.72 -0.49 -0.20 16 12 C -0.17 -3.08 9.74 -39.20 -0.38 -3.46 16 13 C -0.12 -1.94 10.00 -39.62 -0.40 -2.33 16 14 C -0.15 -2.66 10.06 -39.33 -0.40 -3.06 16 15 C 0.08 1.77 7.23 -83.91 -0.61 1.16 16 16 N -0.59 -12.15 5.99 -9.81 -0.06 -12.21 16 17 H 0.39 6.63 8.96 -40.82 -0.37 6.26 16 18 C -0.09 -2.20 10.89 -15.60 -0.17 -2.37 16 19 C 0.02 0.45 5.10 -104.83 -0.53 -0.09 16 20 C -0.41 -10.59 7.70 -38.01 -0.29 -10.88 16 21 H 0.07 1.93 4.69 -52.48 -0.25 1.68 16 22 C 0.06 1.49 5.49 -17.34 -0.10 1.40 16 23 N -0.83 -21.24 10.33 55.54 0.57 -20.67 16 24 Si 0.90 20.27 29.56 -169.99 -5.02 15.25 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C -0.11 -2.53 4.78 -104.64 -0.50 -3.03 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.11 2.46 4.32 -51.93 -0.22 2.24 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.10 1.54 8.06 -52.48 -0.42 1.11 16 42 H 0.19 4.79 5.68 -52.49 -0.30 4.49 16 43 H 0.27 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -28.24 352.41 -9.08 -37.32 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.34 Total: 13.91 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -4.26 Total: -22.57 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.43 Total: -43.71 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.20 Total: -5.50 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.24 -9.08 -37.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239777864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.289 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds