Wall clock time and date at job start Sat Apr 11 2020 00:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46984 * 2 1 4 4 N 1.31801 * 119.67697 * 270.02457 * 3 2 1 5 5 C 1.32299 * 121.78086 * 180.02562 * 4 3 2 6 6 O 1.35647 * 119.54054 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00128 * 0.02562 * 6 5 4 8 8 C 1.39027 * 120.91652 * 359.97438 * 5 4 3 9 9 C 1.38121 * 119.24807 * 359.76228 * 8 5 4 10 10 C 1.39278 * 119.67442 * 90.00436 * 3 2 1 11 11 C 1.48182 * 120.48477 * 359.97345 * 10 3 2 12 12 C 1.39178 * 120.28716 * 245.02551 * 11 10 3 13 13 C 1.38319 * 120.10462 * 179.97438 * 12 11 10 14 14 C 1.38041 * 120.77078 * 0.02562 * 13 12 11 15 15 C 1.39123 * 120.24566 * 0.02562 * 14 13 12 16 16 N 1.38177 * 132.74214 * 180.02562 * 15 14 13 17 17 H 0.96996 * 124.70229 * 359.95599 * 16 15 14 18 18 C 1.35604 * 110.59288 * 179.97438 * 16 15 14 19 19 C 1.38995 * 109.24552 * 359.97438 * 18 16 15 20 20 C 1.40959 * 126.92349 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99792 * 180.02562 * 20 19 18 22 22 C 1.39677 * 120.00344 * 0.02562 * 20 19 18 23 23 N 1.31077 * 120.00182 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99874 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47434 * 60.00074 * 24 22 20 26 26 H 1.48500 * 109.47247 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47253 * 300.00119 * 24 22 20 28 28 C 1.40206 * 120.27768 * 64.99685 * 11 10 3 29 29 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46873 * 299.99508 * 1 2 3 31 31 H 1.08996 * 109.47313 * 59.99634 * 1 2 3 32 32 H 1.09006 * 109.46647 * 240.00355 * 2 1 3 33 33 H 1.08996 * 109.47313 * 120.00366 * 2 1 3 34 34 H 1.08995 * 109.47627 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.46906 * 300.00180 * 7 6 5 36 36 H 1.09002 * 109.47492 * 59.99397 * 7 6 5 37 37 H 1.08003 * 120.38105 * 180.02562 * 8 5 4 38 38 H 1.07999 * 120.81658 * 180.25039 * 9 8 5 39 39 H 1.08002 * 119.94460 * 0.02562 * 12 11 10 40 40 H 1.08002 * 119.61424 * 179.97438 * 13 12 11 41 41 H 1.08005 * 119.87362 * 179.97438 * 14 13 12 42 42 H 1.08000 * 125.37711 * 180.27154 * 18 16 15 43 43 H 0.96994 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2493 2.0362 -1.1451 5 6 2.6905 3.2825 -1.1937 6 8 2.8988 3.8718 -2.3976 7 6 2.6207 3.0886 -3.5601 8 6 2.9435 3.9966 -0.0280 9 6 2.7246 3.3923 1.1946 10 6 2.2622 2.0708 1.2101 11 6 2.0160 1.3758 2.4955 12 6 1.0192 1.8251 3.3567 13 6 0.7922 1.1731 4.5553 14 6 1.5458 0.0740 4.9151 15 6 2.5488 -0.3943 4.0724 16 7 3.4393 -1.4465 4.1688 17 1 3.4877 -2.0623 4.9166 18 6 4.2365 -1.4985 3.0730 19 6 3.8919 -0.4679 2.2064 20 6 4.4815 -0.1772 0.9595 21 1 4.1235 0.6570 0.3742 22 6 5.5286 -0.9679 0.4807 23 7 5.9628 -1.9806 1.1907 24 14 6.3104 -0.5821 -1.1714 25 1 6.8808 0.7886 -1.1412 26 1 7.3908 -1.5624 -1.4488 27 1 5.2806 -0.6663 -2.2381 28 6 2.7849 0.2596 2.8542 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8294 3.6773 -4.4533 35 1 3.2494 2.1981 -3.5571 36 1 1.5717 2.7926 -3.5564 37 1 3.3031 5.0138 -0.0777 38 1 2.9088 3.9249 2.1159 39 1 0.4214 2.6836 3.0882 40 1 0.0169 1.5288 5.2178 41 1 1.3565 -0.4239 5.8547 42 1 5.0131 -2.2286 2.8988 43 1 6.6897 -2.5299 0.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239777864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:02 Heat of formation + Delta-G solvation = 27.291790 kcal Electronic energy + Delta-G solvation = -27692.452815 eV Core-core repulsion = 24088.143513 eV Total energy + Delta-G solvation = -3604.309302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90329 -41.10364 -39.09646 -37.28333 -35.51396 -34.83615 -33.78327 -31.92334 -30.88612 -29.64696 -29.24820 -27.99415 -26.51618 -25.28684 -24.26823 -22.56353 -22.25933 -22.08876 -21.17457 -19.07943 -18.80006 -17.76381 -17.69958 -17.10747 -16.93851 -16.26015 -15.97192 -15.56264 -15.45339 -15.41703 -14.90201 -14.67175 -14.44457 -14.35912 -14.30880 -14.05519 -13.60598 -13.18564 -13.05331 -13.01191 -12.89426 -12.72163 -12.48805 -12.41461 -12.20543 -11.97982 -11.94513 -11.84282 -11.51219 -11.32538 -11.18678 -10.70866 -10.55195 -9.93119 -9.10221 -8.65508 -8.37262 -8.29312 -5.88623 0.12314 0.36229 0.70200 1.07709 1.30741 1.31522 1.40049 2.18622 2.25466 2.34007 2.81276 2.97679 3.16769 3.29691 3.69771 3.83966 3.96072 4.26459 4.28510 4.38016 4.39542 4.41106 4.49102 4.50800 4.52877 4.58935 4.69615 4.76241 4.86137 4.91190 5.01147 5.08872 5.09418 5.21171 5.33443 5.35674 5.41440 5.47940 5.51244 5.58874 5.76357 5.93512 6.03042 6.08144 6.27246 6.33056 6.61308 6.86909 6.99287 7.20756 7.30408 7.47735 8.61123 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.007243 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.444046 B = 3865.058334 C = 5729.976373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C 0.199 3.801 4 N -0.557 5.557 5 C 0.294 3.706 6 O -0.318 6.318 7 C 0.039 3.961 8 C -0.198 4.198 9 C -0.035 4.035 10 C -0.120 4.120 11 C 0.001 3.999 12 C -0.164 4.164 13 C -0.102 4.102 14 C -0.149 4.149 15 C 0.074 3.926 16 N -0.588 5.588 17 H 0.410 0.590 18 C -0.104 4.104 19 C -0.013 4.013 20 C -0.422 4.422 21 H 0.064 0.936 22 C 0.019 3.981 23 N -0.855 5.855 24 Si 0.949 3.051 25 H -0.277 1.277 26 H -0.268 1.268 27 H -0.273 1.273 28 C -0.139 4.139 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.132 0.868 42 H 0.176 0.824 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 7.070 0.268 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 C 0.063 3.937 4 N -0.281 5.281 5 C 0.115 3.885 6 O -0.225 6.225 7 C -0.056 4.056 8 C -0.218 4.218 9 C -0.060 4.060 10 C -0.122 4.122 11 C 0.000 4.000 12 C -0.184 4.184 13 C -0.121 4.121 14 C -0.170 4.170 15 C -0.036 4.036 16 N -0.191 5.191 17 H 0.246 0.754 18 C -0.229 4.229 19 C -0.019 4.019 20 C -0.456 4.456 21 H 0.083 0.917 22 C -0.188 4.188 23 N -0.488 5.488 24 Si 0.774 3.226 25 H -0.202 1.202 26 H -0.192 1.192 27 H -0.198 1.198 28 C -0.145 4.145 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.193 0.807 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.583 6.603 -0.621 10.847 hybrid contribution 1.145 -0.371 -0.056 1.205 sum -7.438 6.232 -0.677 9.727 Atomic orbital electron populations 1.21594 0.92857 1.02434 1.01734 1.20582 0.96985 0.90472 1.03370 1.20882 0.91264 0.95310 0.86286 1.66994 1.19791 1.09958 1.31318 1.20124 0.92969 0.88535 0.86838 1.86168 1.82453 1.41379 1.12534 1.22980 1.01306 0.96232 0.85086 1.21136 1.08281 1.03039 0.89388 1.21700 0.92976 0.92912 0.98437 1.19550 1.04036 0.94949 0.93693 1.17935 0.95931 0.93700 0.92420 1.20915 0.99574 1.02487 0.95385 1.20816 0.99704 0.95000 0.96587 1.20260 0.96964 1.00057 0.99735 1.18567 0.95724 0.92232 0.97096 1.41386 1.30926 1.26945 1.19875 0.75434 1.23187 1.03395 1.06939 0.89344 1.18250 0.94523 0.94438 0.94665 1.18899 1.13466 1.11315 1.01888 0.91743 1.26094 0.97235 0.94778 1.00676 1.69509 1.25244 1.16082 1.37926 0.85716 0.78468 0.78395 0.80040 1.20218 1.19248 1.19789 1.19468 1.00340 0.98377 0.96362 0.91191 0.92471 0.92548 0.92454 0.89715 0.85426 0.94174 0.92391 0.81812 0.82159 0.85120 0.83132 0.84981 0.80733 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.89 71.98 0.71 -3.46 16 2 C -0.08 -3.10 4.95 29.85 0.15 -2.96 16 3 C 0.20 8.16 3.90 42.81 0.17 8.32 16 4 N -0.56 -22.37 9.10 -296.06 -2.69 -25.07 16 5 C 0.29 10.76 7.49 84.81 0.64 11.40 16 6 O -0.32 -10.33 10.47 -89.61 -0.94 -11.27 16 7 C 0.04 1.03 10.38 113.37 1.18 2.21 16 8 C -0.20 -6.46 10.03 22.43 0.22 -6.24 16 9 C -0.04 -1.20 9.89 22.67 0.22 -0.98 16 10 C -0.12 -4.72 4.33 -19.95 -0.09 -4.80 16 11 C 0.00 0.05 4.65 -19.93 -0.09 -0.04 16 12 C -0.16 -5.28 9.74 22.52 0.22 -5.06 16 13 C -0.10 -2.96 10.00 22.24 0.22 -2.73 16 14 C -0.15 -4.83 10.06 22.44 0.23 -4.60 16 15 C 0.07 3.04 7.23 38.85 0.28 3.32 16 16 N -0.59 -24.33 5.99 -184.94 -1.11 -25.43 16 17 H 0.41 13.70 8.96 -92.71 -0.83 12.86 16 18 C -0.10 -5.19 10.89 84.29 0.92 -4.27 16 19 C -0.01 -0.70 5.10 -20.00 -0.10 -0.80 16 20 C -0.42 -22.94 7.70 23.28 0.18 -22.76 16 21 H 0.06 3.53 4.69 -2.91 -0.01 3.52 16 22 C 0.02 1.01 5.49 85.15 0.47 1.47 16 23 N -0.86 -45.55 10.33 21.79 0.23 -45.32 16 24 Si 0.95 43.12 29.56 68.60 2.03 45.14 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 28 C -0.14 -6.34 4.78 -19.88 -0.10 -6.44 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.08 3.94 4.32 -2.39 -0.01 3.93 16 34 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.04 1.20 8.10 -2.38 -0.02 1.18 16 36 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.18 9.26 5.68 -2.91 -0.02 9.25 16 43 H 0.27 13.66 8.30 -92.71 -0.77 12.89 16 Total: -1.00 -63.88 352.41 3.16 -60.72 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: 0.23 Total: 39.64 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 5.42 Total: -38.41 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.58 Total: -95.82 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.94 Total: -11.27 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.88 3.16 -60.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239777864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.010 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds