Wall clock time and date at job start Sat Apr 11 2020 00:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 O 1.42905 * 109.46779 * 240.00004 * 2 1 3 5 5 C 1.50701 * 109.47256 * 120.00404 * 2 1 3 6 6 C 1.38332 * 120.34956 * 330.27057 * 5 2 1 7 7 N 1.31901 * 121.04522 * 180.29232 * 6 5 2 8 8 C 1.31740 * 121.86075 * 359.71728 * 7 6 5 9 9 C 1.39397 * 120.58085 * 359.97438 * 8 7 6 10 10 C 1.48203 * 120.54137 * 180.02562 * 9 8 7 11 11 C 1.39157 * 120.28187 * 236.61298 * 10 9 8 12 12 C 1.38324 * 120.10751 * 180.02562 * 11 10 9 13 13 C 1.38044 * 120.77221 * 359.97438 * 12 11 10 14 14 C 1.39123 * 120.23464 * 0.02562 * 13 12 11 15 15 N 1.38183 * 132.74474 * 179.97438 * 14 13 12 16 16 H 0.97006 * 124.69837 * 359.94375 * 15 14 13 17 17 C 1.35593 * 110.59666 * 179.19118 * 15 14 13 18 18 C 1.38994 * 109.24517 * 0.70032 * 17 15 14 19 19 C 1.40958 * 126.92809 * 179.44595 * 18 17 15 20 20 H 1.08006 * 119.99997 * 202.22376 * 19 18 17 21 21 C 1.39689 * 119.99980 * 22.22507 * 19 18 17 22 22 N 1.31077 * 120.00173 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47083 * 89.99907 * 23 21 19 25 25 H 1.48495 * 109.47160 * 210.00136 * 23 21 19 26 26 H 1.48504 * 109.47139 * 330.00204 * 23 21 19 27 27 C 1.40196 * 120.27843 * 56.34567 * 10 9 8 28 28 C 1.38386 * 120.35415 * 150.00023 * 5 2 1 29 29 H 1.09004 * 109.46602 * 299.99744 * 1 2 3 30 30 H 1.08994 * 109.47263 * 59.99798 * 1 2 3 31 31 H 1.09009 * 109.46958 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46899 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46773 * 300.00358 * 3 2 1 34 34 H 1.09000 * 109.46845 * 60.00267 * 3 2 1 35 35 H 0.96696 * 113.99942 * 299.99609 * 4 2 1 36 36 H 1.07992 * 119.48414 * 359.97438 * 6 5 2 37 37 H 1.08001 * 119.70598 * 180.02562 * 8 7 6 38 38 H 1.08002 * 119.94742 * 359.97438 * 11 10 9 39 39 H 1.07994 * 119.61831 * 179.97438 * 12 11 10 40 40 H 1.07991 * 119.88436 * 179.97438 * 13 12 11 41 41 H 1.08001 * 125.37727 * 180.12261 * 17 15 14 42 42 H 0.96999 * 119.99836 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.84960 * 359.97438 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0324 -0.7105 1.2304 6 6 1.2881 -0.7002 2.3964 7 7 1.7173 -1.3126 3.4829 8 6 2.8630 -1.9626 3.5081 9 6 3.6682 -2.0248 2.3719 10 6 4.9565 -2.7567 2.4012 11 6 6.1409 -2.1062 2.0686 12 6 7.3413 -2.7929 2.0966 13 6 7.3842 -4.1259 2.4529 14 6 6.2142 -4.7990 2.7897 15 7 5.9593 -6.1010 3.1763 16 1 6.6347 -6.7905 3.2734 17 6 4.6366 -6.2768 3.4171 18 6 3.9649 -5.0835 3.1785 19 6 2.5800 -4.8519 3.3021 20 1 2.1196 -4.0336 2.7683 21 6 1.8031 -5.6806 4.1151 22 7 2.3618 -6.6739 4.7626 23 14 -0.0321 -5.3731 4.2796 24 1 -0.7577 -6.1368 3.2329 25 1 -0.4897 -5.8148 5.6214 26 1 -0.3079 -3.9232 4.1150 27 6 4.9931 -4.1090 2.7695 28 6 3.2406 -1.3849 1.2043 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.7210 -1.5952 -1.2329 36 1 0.3430 -0.1782 2.4190 37 1 3.1806 -2.4522 4.4168 38 1 6.1227 -1.0635 1.7874 39 1 8.2556 -2.2803 1.8366 40 1 8.3292 -4.6482 2.4695 41 1 4.1762 -7.2008 3.7344 42 1 1.8223 -7.2491 5.3274 43 1 3.8397 -1.4131 0.3061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240671883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:06 Heat of formation + Delta-G solvation = 27.973820 kcal Electronic energy + Delta-G solvation = -27050.505073 eV Core-core repulsion = 23446.225346 eV Total energy + Delta-G solvation = -3604.279727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29410 -39.57619 -37.56722 -35.91038 -33.67600 -32.85873 -32.42793 -30.55142 -29.27541 -28.31000 -27.75555 -27.32024 -24.81305 -23.54599 -23.06533 -21.41672 -20.56866 -20.09141 -19.39930 -17.58339 -16.57712 -16.42815 -15.84168 -15.81338 -15.38072 -14.78615 -14.64850 -14.45856 -14.33897 -13.50869 -13.27387 -13.12784 -12.86718 -12.66196 -12.53802 -12.52209 -12.39354 -12.22004 -11.75650 -11.68527 -11.48998 -11.30287 -11.15832 -11.09894 -10.87598 -10.65879 -10.50489 -10.12533 -9.95512 -9.75249 -9.30306 -9.19009 -8.90791 -8.51268 -8.06772 -7.15579 -6.52870 -6.50626 -4.02783 1.42221 1.75193 2.20811 2.54075 3.11055 3.20388 3.30246 4.10738 4.18449 4.20103 4.28583 4.45025 4.63672 4.75997 4.84330 5.00187 5.11010 5.34495 5.42641 5.47451 5.52681 5.57743 5.65488 5.69623 5.76174 5.82762 5.88475 5.94192 6.02808 6.16461 6.17825 6.26229 6.36466 6.54167 6.60720 6.69487 6.83105 7.06251 7.12402 7.21001 7.33583 7.41717 7.55805 7.66798 7.68970 7.96283 8.26377 8.54099 8.61516 8.94780 9.09815 9.14668 10.51485 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.006071 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.400970 B = 4610.890465 C = 6770.075002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.179 3.821 3 C -0.133 4.133 4 O -0.558 6.558 5 C -0.187 4.187 6 C 0.093 3.907 7 N -0.487 5.487 8 C 0.153 3.847 9 C -0.071 4.071 10 C 0.001 3.999 11 C -0.166 4.166 12 C -0.117 4.117 13 C -0.144 4.144 14 C 0.085 3.915 15 N -0.591 5.591 16 H 0.395 0.605 17 C -0.072 4.072 18 C 0.024 3.976 19 C -0.423 4.423 20 H 0.071 0.929 21 C 0.066 3.934 22 N -0.835 5.835 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.257 1.257 27 C -0.110 4.110 28 C -0.053 4.053 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.380 0.620 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.175 0.825 42 H 0.272 0.728 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 9.006 -6.324 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.137 3.863 3 C -0.190 4.190 4 O -0.364 6.364 5 C -0.189 4.189 6 C -0.064 4.064 7 N -0.194 5.194 8 C -0.004 4.004 9 C -0.073 4.073 10 C 0.000 4.000 11 C -0.187 4.187 12 C -0.137 4.137 13 C -0.166 4.166 14 C -0.026 4.026 15 N -0.192 5.192 16 H 0.228 0.772 17 C -0.196 4.196 18 C 0.019 3.981 19 C -0.456 4.456 20 H 0.089 0.911 21 C -0.145 4.145 22 N -0.465 5.465 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.180 1.180 27 C -0.117 4.117 28 C -0.079 4.079 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.227 0.773 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.192 0.808 42 H 0.082 0.918 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.461 9.302 -5.471 10.801 hybrid contribution -0.287 -1.074 -0.328 1.159 sum 0.174 8.228 -5.799 10.068 Atomic orbital electron populations 1.22551 0.95361 1.02953 1.02703 1.19823 0.92265 0.92113 0.82052 1.21732 1.02163 0.92931 1.02150 1.86494 1.77416 1.29322 1.43145 1.21244 0.97261 1.02877 0.97559 1.22570 0.98781 0.96763 0.88250 1.67706 1.14639 1.08518 1.28544 1.22980 0.88031 0.91253 0.98146 1.19788 0.95885 0.97300 0.94297 1.17862 0.90751 0.91655 0.99750 1.20562 0.91802 0.98891 1.07404 1.20310 0.96915 0.93554 1.02892 1.19872 0.94793 0.94790 1.07125 1.18121 0.94750 0.85977 1.03758 1.41464 1.09077 1.08272 1.60381 0.77159 1.22688 0.80097 1.01062 1.15774 1.17978 0.91935 0.88612 0.99571 1.18664 0.90987 1.12106 1.23869 0.91060 1.25550 0.99893 0.94577 0.94498 1.69683 1.36721 1.15041 1.25077 0.86418 0.83206 0.80221 0.77807 1.20213 1.20629 1.18030 1.19426 0.93914 0.92386 1.05956 1.21389 0.94669 0.94167 0.97640 0.91183 0.91627 0.91881 0.91800 0.91839 0.91143 0.77254 0.83721 0.82318 0.87543 0.87269 0.87985 0.80812 0.91776 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.12 37.16 0.30 -1.56 16 2 C 0.18 2.20 1.25 -91.77 -0.11 2.08 16 3 C -0.13 -1.45 8.83 37.16 0.33 -1.12 16 4 O -0.56 -7.15 12.03 -35.23 -0.42 -7.58 16 5 C -0.19 -2.84 4.81 -104.53 -0.50 -3.35 16 6 C 0.09 1.52 10.30 -17.49 -0.18 1.34 16 7 N -0.49 -9.55 10.35 -12.94 -0.13 -9.69 16 8 C 0.15 3.15 7.88 -17.16 -0.14 3.02 16 9 C -0.07 -1.39 4.63 -104.77 -0.48 -1.87 16 10 C 0.00 0.02 5.44 -104.73 -0.57 -0.55 16 11 C -0.17 -3.03 9.64 -39.21 -0.38 -3.41 16 12 C -0.12 -2.01 10.00 -39.62 -0.40 -2.41 16 13 C -0.14 -2.63 10.06 -39.32 -0.40 -3.02 16 14 C 0.08 1.81 7.23 -83.91 -0.61 1.20 16 15 N -0.59 -12.25 5.99 -9.80 -0.06 -12.31 16 16 H 0.40 6.66 8.96 -40.82 -0.37 6.30 16 17 C -0.07 -1.75 10.77 -15.61 -0.17 -1.92 16 18 C 0.02 0.62 5.96 -104.83 -0.62 -0.01 16 19 C -0.42 -11.00 7.53 -38.01 -0.29 -11.28 16 20 H 0.07 1.86 5.58 -52.48 -0.29 1.56 16 21 C 0.07 1.67 5.47 -17.33 -0.09 1.58 16 22 N -0.83 -21.58 10.83 55.54 0.60 -20.98 16 23 Si 0.90 20.00 29.56 -169.99 -5.02 14.98 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.11 -2.55 6.08 -104.64 -0.64 -3.19 16 28 C -0.05 -0.91 9.08 -38.92 -0.35 -1.26 16 29 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.38 4.12 9.04 45.56 0.41 4.53 16 36 H 0.15 1.95 6.16 -52.49 -0.32 1.63 16 37 H 0.16 3.51 7.79 -52.49 -0.41 3.10 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.18 4.35 6.40 -52.49 -0.34 4.02 16 42 H 0.27 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.13 2.17 7.57 -52.49 -0.40 1.77 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -29.02 354.35 -9.56 -38.59 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -4.57 Total: 17.36 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -5.30 Total: -25.71 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.41 Total: -42.97 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.42 Total: -7.58 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.02 -9.56 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240671883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.560 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds