Wall clock time and date at job start Sat Apr 11 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32733 * 1 3 3 C 1.50694 * 120.00509 * 2 1 4 4 C 1.47597 * 119.99764 * 179.97438 * 2 1 3 5 5 C 1.39729 * 119.58888 * 0.02562 * 4 2 1 6 6 C 1.37972 * 119.20389 * 179.97438 * 5 4 2 7 7 C 1.40252 * 118.39654 * 0.02562 * 6 5 4 8 8 C 1.47645 * 120.43895 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99846 * 330.06600 * 8 7 6 10 10 N 1.34770 * 119.99746 * 150.07455 * 8 7 6 11 11 C 1.46501 * 120.00473 * 6.18748 * 10 8 7 12 12 C 1.50697 * 109.47001 * 98.05077 * 11 10 8 13 13 H 1.07995 * 120.00131 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99929 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00022 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47357 * 59.99528 * 16 14 12 18 18 H 1.48501 * 109.47254 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47029 * 299.99662 * 16 14 12 20 20 C 1.39846 * 119.99736 * 186.19165 * 10 8 7 21 21 C 1.38891 * 120.07349 * 173.05468 * 20 10 8 22 22 C 1.38118 * 119.92545 * 179.69628 * 21 20 10 23 23 C 1.38283 * 120.07017 * 0.57682 * 22 21 20 24 24 C 1.38283 * 120.14769 * 359.71800 * 23 22 21 25 25 C 1.38104 * 120.07273 * 359.97438 * 24 23 22 26 26 C 1.39673 * 119.11829 * 359.97438 * 7 6 5 27 27 N 1.31484 * 120.70715 * 0.02562 * 26 7 6 28 28 H 1.07998 * 119.99461 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00292 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47472 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47278 * 300.00336 * 3 2 1 32 32 H 1.09008 * 109.46884 * 59.99842 * 3 2 1 33 33 H 1.07995 * 120.39812 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.80068 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46904 * 218.04948 * 11 10 8 36 36 H 1.09000 * 109.46595 * 338.04848 * 11 10 8 37 37 H 0.96996 * 119.99905 * 179.97438 * 15 14 12 38 38 H 1.07997 * 120.03699 * 359.97438 * 21 20 10 39 39 H 1.07995 * 119.96147 * 180.31496 * 22 21 20 40 40 H 1.07999 * 119.92321 * 179.70056 * 23 22 21 41 41 H 1.07999 * 119.96453 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.04037 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.64677 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3273 0.0000 0.0000 3 6 2.0809 1.3050 0.0000 4 6 2.0653 -1.2783 0.0006 5 6 1.3579 -2.4833 0.0006 6 6 2.0557 -3.6735 0.0006 7 6 3.4574 -3.6249 0.0011 8 6 4.2491 -4.8712 0.0006 9 8 3.8046 -5.8740 0.5252 10 7 5.4644 -4.8971 -0.5813 11 6 6.0583 -3.6595 -1.0928 12 6 7.0260 -3.1094 -0.0769 13 1 7.1826 -3.6295 0.8565 14 6 7.7107 -1.9416 -0.3389 15 7 7.5196 -1.3080 -1.4754 16 14 8.9107 -1.2601 0.9200 17 1 9.9832 -2.2561 1.1714 18 1 9.5127 -0.0055 0.4015 19 1 8.1908 -0.9772 2.1877 20 6 6.1586 -6.1056 -0.6968 21 6 7.3422 -6.1619 -1.4213 22 6 8.0286 -7.3556 -1.5282 23 6 7.5324 -8.4966 -0.9248 24 6 6.3511 -8.4454 -0.2078 25 6 5.6631 -7.2535 -0.0918 26 6 4.0944 -2.3819 0.0011 27 7 3.3945 -1.2688 0.0011 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 3.1525 1.1058 -0.0005 31 1 1.8176 1.8766 -0.8900 32 1 1.8176 1.8766 0.8900 33 1 0.2779 -2.4830 -0.0003 34 1 1.5352 -4.6198 0.0010 35 1 6.5873 -3.8677 -2.0229 36 1 5.2714 -2.9284 -1.2781 37 1 8.0009 -0.4863 -1.6595 38 1 7.7278 -5.2722 -1.8969 39 1 8.9516 -7.3989 -2.0872 40 1 8.0685 -9.4299 -1.0140 41 1 5.9664 -9.3382 0.2626 42 1 4.7403 -7.2142 0.4680 43 1 5.1734 -2.3345 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240834466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:09 Heat of formation + Delta-G solvation = 86.657745 kcal Electronic energy + Delta-G solvation = -26647.954979 eV Core-core repulsion = 23046.219978 eV Total energy + Delta-G solvation = -3601.735001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77917 -39.44802 -37.71432 -35.77094 -35.09884 -32.93261 -32.24570 -30.95561 -30.31278 -28.89216 -27.68842 -27.16570 -24.57648 -23.54696 -23.09186 -22.03802 -21.45166 -19.68185 -19.17583 -17.14400 -17.00219 -16.63900 -16.36350 -15.71922 -15.66904 -14.74562 -14.73688 -14.47108 -14.12049 -13.85929 -13.53561 -13.35007 -13.22822 -12.90905 -12.86115 -12.83094 -12.55628 -12.29718 -12.17847 -11.61539 -11.48877 -11.44021 -11.18310 -11.04122 -10.64384 -10.42494 -10.35128 -10.23924 -9.89852 -9.51036 -9.27840 -9.15652 -8.81923 -8.66557 -8.36830 -8.17461 -7.26648 -6.40560 -4.53413 0.66929 1.59029 1.84844 1.98944 2.36921 3.17929 3.22758 3.24412 3.32627 3.49662 4.17349 4.24235 4.39649 4.48074 4.77746 4.90342 4.95239 5.14326 5.20191 5.36207 5.44005 5.49433 5.54884 5.65785 5.69184 5.80128 5.87606 5.97976 6.02712 6.08735 6.12547 6.20274 6.23833 6.42985 6.45164 6.58627 6.68276 6.78257 6.81994 6.95386 7.02566 7.09315 7.11560 7.21045 7.53185 7.69216 7.77094 7.97696 8.32578 8.51986 8.65081 9.16277 10.63297 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.004981 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.278879 B = 5619.492023 C = 7813.722127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.070 4.070 3 C -0.120 4.120 4 C 0.169 3.831 5 C -0.191 4.191 6 C -0.021 4.021 7 C -0.197 4.197 8 C 0.566 3.434 9 O -0.538 6.538 10 N -0.526 5.526 11 C 0.200 3.800 12 C -0.556 4.556 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.872 5.872 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.171 3.829 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.160 4.160 24 C -0.109 4.109 25 C -0.180 4.180 26 C 0.132 3.868 27 N -0.476 5.476 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.273 0.727 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.179 0.821 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -1.753 0.115 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.071 4.071 3 C -0.176 4.176 4 C 0.033 3.967 5 C -0.211 4.211 6 C -0.047 4.047 7 C -0.202 4.202 8 C 0.357 3.643 9 O -0.419 6.419 10 N -0.244 5.244 11 C 0.082 3.918 12 C -0.593 4.593 13 H 0.087 0.913 14 C -0.131 4.131 15 N -0.507 5.507 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.076 3.924 21 C -0.161 4.161 22 C -0.124 4.124 23 C -0.179 4.179 24 C -0.128 4.128 25 C -0.199 4.199 26 C -0.025 4.025 27 N -0.184 5.184 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.195 0.805 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.221 -1.195 0.246 8.311 hybrid contribution 0.358 -0.400 0.483 0.722 sum -7.863 -1.596 0.729 8.057 Atomic orbital electron populations 1.24270 0.94633 1.02385 1.00507 1.20445 0.93893 0.93062 0.99684 1.20793 1.02591 0.92986 1.01274 1.20402 0.90524 0.92559 0.93253 1.21926 1.00958 0.92347 1.05886 1.21480 0.92445 0.98777 0.92041 1.20967 0.94652 0.95333 1.09211 1.18154 0.80798 0.87387 0.77969 1.90330 1.71429 1.34345 1.45837 1.45795 1.15752 1.09168 1.53663 1.20538 0.95225 0.79773 0.96291 1.21288 1.24970 1.09093 1.03947 0.91301 1.24971 0.96273 0.96142 0.95708 1.69901 1.40844 1.17397 1.22561 0.86470 0.81014 0.78392 0.81365 1.19784 1.20774 1.19619 1.18002 0.92688 0.85323 0.96436 1.21074 0.94915 0.99047 1.01039 1.20853 0.99299 0.92386 0.99847 1.20991 0.97618 0.98024 1.01272 1.21021 0.95250 0.97492 0.99022 1.22780 1.03934 0.91108 1.02108 1.25719 1.04982 0.85396 0.86384 1.68076 1.06132 1.31199 1.12969 0.87310 0.87832 0.89541 0.91646 0.91734 0.84566 0.84265 0.93455 0.91467 0.91730 0.84584 0.86453 0.87121 0.86746 0.80469 0.75141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 13.79 28.85 0.40 -1.48 16 2 C -0.07 -0.96 6.00 -102.69 -0.62 -1.57 16 3 C -0.12 -1.54 10.02 36.00 0.36 -1.18 16 4 C 0.17 2.81 6.73 -83.02 -0.56 2.25 16 5 C -0.19 -2.83 9.41 -39.12 -0.37 -3.20 16 6 C -0.02 -0.35 9.72 -38.92 -0.38 -0.73 16 7 C -0.20 -3.86 5.59 -104.76 -0.59 -4.45 16 8 C 0.57 11.93 7.42 -12.42 -0.09 11.84 16 9 O -0.54 -11.54 13.16 5.29 0.07 -11.47 16 10 N -0.53 -11.38 2.70 -115.86 -0.31 -11.69 16 11 C 0.20 4.58 4.07 -5.19 -0.02 4.56 16 12 C -0.56 -13.61 7.41 -34.44 -0.26 -13.86 16 13 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.08 1.88 5.33 -17.82 -0.09 1.78 16 15 N -0.87 -22.26 13.29 55.43 0.74 -21.53 16 16 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C 0.17 3.56 6.43 -83.72 -0.54 3.02 16 21 C -0.14 -2.73 9.23 -39.38 -0.36 -3.10 16 22 C -0.11 -1.75 10.04 -39.61 -0.40 -2.15 16 23 C -0.16 -2.50 10.04 -39.55 -0.40 -2.90 16 24 C -0.11 -1.81 10.04 -39.61 -0.40 -2.21 16 25 C -0.18 -3.50 9.06 -39.39 -0.36 -3.86 16 26 C 0.13 2.76 8.65 -17.16 -0.15 2.61 16 27 N -0.48 -9.43 9.14 -9.55 -0.09 -9.51 16 28 H 0.11 0.91 8.05 -52.49 -0.42 0.49 16 29 H 0.10 0.95 5.99 -52.49 -0.31 0.64 16 30 H 0.09 1.34 7.07 -51.93 -0.37 0.97 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.14 1.52 6.13 -52.49 -0.32 1.20 16 34 H 0.14 2.01 7.98 -52.49 -0.42 1.59 16 35 H 0.05 1.12 6.39 -51.93 -0.33 0.79 16 36 H 0.07 1.58 4.09 -51.93 -0.21 1.37 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.14 2.75 6.19 -52.49 -0.32 2.43 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.18 3.62 4.51 -56.28 -0.25 3.37 16 43 H 0.23 5.39 3.03 -52.48 -0.16 5.23 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -27.04 354.16 -8.88 -35.91 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.79 Total: 12.84 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -4.81 Total: -14.62 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.34 Total: -42.73 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.04 -8.88 -35.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240834466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.571 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds