Wall clock time and date at job start Sat Apr 11 2020 00:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32733 * 1 3 3 C 1.50694 * 120.00509 * 2 1 4 4 C 1.47597 * 119.99764 * 179.97438 * 2 1 3 5 5 C 1.39729 * 119.58888 * 0.02562 * 4 2 1 6 6 C 1.37972 * 119.20389 * 179.97438 * 5 4 2 7 7 C 1.40252 * 118.39654 * 0.02562 * 6 5 4 8 8 C 1.47645 * 120.43895 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99846 * 330.06600 * 8 7 6 10 10 N 1.34770 * 119.99746 * 150.07455 * 8 7 6 11 11 C 1.46501 * 120.00473 * 6.18748 * 10 8 7 12 12 C 1.50697 * 109.47001 * 98.05077 * 11 10 8 13 13 H 1.07995 * 120.00131 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99929 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00022 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47357 * 59.99528 * 16 14 12 18 18 H 1.48501 * 109.47254 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47029 * 299.99662 * 16 14 12 20 20 C 1.39846 * 119.99736 * 186.19165 * 10 8 7 21 21 C 1.38891 * 120.07349 * 173.05468 * 20 10 8 22 22 C 1.38118 * 119.92545 * 179.69628 * 21 20 10 23 23 C 1.38283 * 120.07017 * 0.57682 * 22 21 20 24 24 C 1.38283 * 120.14769 * 359.71800 * 23 22 21 25 25 C 1.38104 * 120.07273 * 359.97438 * 24 23 22 26 26 C 1.39673 * 119.11829 * 359.97438 * 7 6 5 27 27 N 1.31484 * 120.70715 * 0.02562 * 26 7 6 28 28 H 1.07998 * 119.99461 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00292 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47472 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47278 * 300.00336 * 3 2 1 32 32 H 1.09008 * 109.46884 * 59.99842 * 3 2 1 33 33 H 1.07995 * 120.39812 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.80068 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46904 * 218.04948 * 11 10 8 36 36 H 1.09000 * 109.46595 * 338.04848 * 11 10 8 37 37 H 0.96996 * 119.99905 * 179.97438 * 15 14 12 38 38 H 1.07997 * 120.03699 * 359.97438 * 21 20 10 39 39 H 1.07995 * 119.96147 * 180.31496 * 22 21 20 40 40 H 1.07999 * 119.92321 * 179.70056 * 23 22 21 41 41 H 1.07999 * 119.96453 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.04037 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.64677 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3273 0.0000 0.0000 3 6 2.0809 1.3050 0.0000 4 6 2.0653 -1.2783 0.0006 5 6 1.3579 -2.4833 0.0006 6 6 2.0557 -3.6735 0.0006 7 6 3.4574 -3.6249 0.0011 8 6 4.2491 -4.8712 0.0006 9 8 3.8046 -5.8740 0.5252 10 7 5.4644 -4.8971 -0.5813 11 6 6.0583 -3.6595 -1.0928 12 6 7.0260 -3.1094 -0.0769 13 1 7.1826 -3.6295 0.8565 14 6 7.7107 -1.9416 -0.3389 15 7 7.5196 -1.3080 -1.4754 16 14 8.9107 -1.2601 0.9200 17 1 9.9832 -2.2561 1.1714 18 1 9.5127 -0.0055 0.4015 19 1 8.1908 -0.9772 2.1877 20 6 6.1586 -6.1056 -0.6968 21 6 7.3422 -6.1619 -1.4213 22 6 8.0286 -7.3556 -1.5282 23 6 7.5324 -8.4966 -0.9248 24 6 6.3511 -8.4454 -0.2078 25 6 5.6631 -7.2535 -0.0918 26 6 4.0944 -2.3819 0.0011 27 7 3.3945 -1.2688 0.0011 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 3.1525 1.1058 -0.0005 31 1 1.8176 1.8766 -0.8900 32 1 1.8176 1.8766 0.8900 33 1 0.2779 -2.4830 -0.0003 34 1 1.5352 -4.6198 0.0010 35 1 6.5873 -3.8677 -2.0229 36 1 5.2714 -2.9284 -1.2781 37 1 8.0009 -0.4863 -1.6595 38 1 7.7278 -5.2722 -1.8969 39 1 8.9516 -7.3989 -2.0872 40 1 8.0685 -9.4299 -1.0140 41 1 5.9664 -9.3382 0.2626 42 1 4.7403 -7.2142 0.4680 43 1 5.1734 -2.3345 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240834466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:08 Heat of formation + Delta-G solvation = 73.647322 kcal Electronic energy + Delta-G solvation = -26648.519154 eV Core-core repulsion = 23046.219978 eV Total energy + Delta-G solvation = -3602.299175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29286 -40.83186 -39.15680 -37.36296 -36.25375 -34.78279 -33.60188 -32.33120 -31.72102 -30.32975 -29.42738 -28.17059 -25.96419 -25.31767 -24.46843 -23.44756 -22.87373 -21.15265 -20.34469 -18.87486 -18.59450 -18.29045 -17.64119 -17.15332 -16.96012 -16.52929 -16.28658 -15.82588 -15.57910 -15.15122 -14.86476 -14.75613 -14.50269 -14.34523 -14.31181 -14.05751 -13.96213 -13.65527 -13.62811 -13.18817 -12.88190 -12.79352 -12.57160 -12.44134 -12.28109 -12.06542 -11.94506 -11.89522 -11.16582 -11.02701 -10.81069 -10.66523 -10.53107 -10.17831 -9.77410 -9.38070 -8.81712 -8.31198 -6.50570 -0.62526 0.25138 0.45015 0.57696 1.23091 1.38760 1.39886 1.47406 1.83551 1.94245 2.33951 2.86418 2.97007 3.04442 3.17102 3.46135 3.66894 3.91848 3.96729 4.10843 4.17518 4.20350 4.36322 4.41305 4.51080 4.59669 4.64225 4.69246 4.82134 4.84558 4.87278 4.88074 5.01047 5.05572 5.16291 5.19611 5.25552 5.42872 5.48259 5.57723 5.60761 5.68262 5.68547 5.75763 5.81781 5.84342 6.29778 6.31931 6.61964 6.93199 7.01498 7.21273 8.70899 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.004981 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.278879 B = 5619.492023 C = 7813.722127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 C -0.116 4.116 4 C 0.165 3.835 5 C -0.178 4.178 6 C -0.017 4.017 7 C -0.221 4.221 8 C 0.560 3.440 9 O -0.549 6.549 10 N -0.533 5.533 11 C 0.218 3.782 12 C -0.555 4.555 13 H 0.051 0.949 14 C 0.040 3.960 15 N -0.897 5.897 16 Si 0.952 3.048 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.138 3.862 21 C -0.162 4.162 22 C -0.102 4.102 23 C -0.148 4.148 24 C -0.104 4.104 25 C -0.198 4.198 26 C 0.112 3.888 27 N -0.506 5.506 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.274 0.726 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -2.594 0.503 10.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.172 4.172 4 C 0.029 3.971 5 C -0.197 4.197 6 C -0.043 4.043 7 C -0.226 4.226 8 C 0.352 3.648 9 O -0.432 6.432 10 N -0.251 5.251 11 C 0.099 3.901 12 C -0.592 4.592 13 H 0.069 0.931 14 C -0.164 4.164 15 N -0.533 5.533 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.199 1.199 20 C 0.043 3.957 21 C -0.182 4.182 22 C -0.120 4.120 23 C -0.166 4.166 24 C -0.123 4.123 25 C -0.217 4.217 26 C -0.044 4.044 27 N -0.215 5.215 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.179 0.821 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.164 0.836 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.183 0.817 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.245 -2.054 0.631 10.468 hybrid contribution 0.816 -0.142 0.359 0.903 sum -9.430 -2.196 0.991 9.733 Atomic orbital electron populations 1.24713 0.93107 1.04797 0.93985 1.20491 0.95070 0.91709 1.04625 1.20732 1.00294 0.93500 1.02720 1.21065 0.89609 0.94955 0.91461 1.22368 1.03011 0.90697 1.03584 1.21783 0.90999 1.00564 0.90974 1.20936 0.96166 0.93959 1.11553 1.18457 0.80722 0.87973 0.77667 1.90310 1.71645 1.34805 1.46396 1.45770 1.16219 1.09119 1.53986 1.20178 0.94523 0.80335 0.95076 1.21266 1.25344 1.09157 1.03474 0.93071 1.25553 0.97511 0.96245 0.97080 1.69973 1.41762 1.17757 1.23824 0.85682 0.79233 0.78061 0.79325 1.19533 1.19853 1.19900 1.18357 0.93691 0.85509 0.98124 1.21093 0.95350 0.99832 1.01951 1.21231 0.99810 0.91550 0.99431 1.21445 0.96928 0.99091 0.99149 1.21411 0.95162 0.97320 0.98388 1.22769 1.04260 0.91953 1.02737 1.25152 1.04113 0.86626 0.88530 1.68013 1.08271 1.30830 1.14414 0.84356 0.85791 0.93233 0.90348 0.90180 0.79855 0.82113 0.95290 0.92099 0.91637 0.86631 0.83584 0.82881 0.83497 0.81685 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 13.79 66.65 0.92 -1.12 16 2 C -0.12 -2.97 6.00 -18.57 -0.11 -3.08 16 3 C -0.12 -2.90 10.02 71.23 0.71 -2.19 16 4 C 0.16 5.40 6.73 41.81 0.28 5.68 16 5 C -0.18 -4.85 9.41 22.57 0.21 -4.64 16 6 C -0.02 -0.56 9.72 22.70 0.22 -0.34 16 7 C -0.22 -9.11 5.59 -19.96 -0.11 -9.22 16 8 C 0.56 25.03 7.42 86.73 0.64 25.67 16 9 O -0.55 -24.53 13.16 -3.99 -0.05 -24.58 16 10 N -0.53 -24.77 2.70 -638.73 -1.72 -26.49 16 11 C 0.22 10.85 4.07 85.63 0.35 11.20 16 12 C -0.55 -29.16 7.41 25.60 0.19 -28.97 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.04 2.10 5.33 84.66 0.45 2.55 16 15 N -0.90 -48.28 13.29 21.45 0.28 -47.99 16 16 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.14 6.02 6.43 38.18 0.25 6.27 16 21 C -0.16 -6.56 9.23 22.40 0.21 -6.36 16 22 C -0.10 -3.27 10.04 22.25 0.22 -3.04 16 23 C -0.15 -4.17 10.04 22.29 0.22 -3.95 16 24 C -0.10 -3.27 10.04 22.25 0.22 -3.05 16 25 C -0.20 -7.83 9.06 22.40 0.20 -7.63 16 26 C 0.11 5.04 8.65 85.09 0.74 5.78 16 27 N -0.51 -21.07 9.14 -184.13 -1.68 -22.76 16 28 H 0.14 1.47 8.05 -2.91 -0.02 1.45 16 29 H 0.12 1.48 5.99 -2.91 -0.02 1.46 16 30 H 0.05 1.60 7.07 -2.39 -0.02 1.58 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.18 3.15 6.13 -2.91 -0.02 3.13 16 34 H 0.16 4.39 7.98 -2.91 -0.02 4.37 16 35 H 0.03 1.52 6.39 -2.38 -0.02 1.50 16 36 H 0.06 3.15 4.09 -2.39 -0.01 3.14 16 37 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.12 5.07 6.19 -2.91 -0.02 5.05 16 39 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.17 6.96 4.51 -63.07 -0.28 6.67 16 43 H 0.20 10.25 3.03 -2.91 -0.01 10.24 16 Total: -1.00 -64.70 354.16 5.45 -59.25 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.78 Total: 34.94 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 5.82 Total: -16.44 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -3.12 Total: -97.24 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -64.70 5.45 -59.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240834466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.896 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds