Wall clock time and date at job start Sat Apr 11 2020 00:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.50698 * 109.47240 * 120.00316 * 2 1 3 5 5 C 1.34212 * 126.56924 * 299.94103 * 4 2 1 6 6 N 1.36908 * 109.93419 * 180.02562 * 5 4 2 7 7 H 0.96998 * 124.97347 * 180.02562 * 6 5 4 8 8 C 1.37446 * 110.04508 * 359.97438 * 6 5 4 9 9 N 1.32732 * 132.99693 * 179.97438 * 8 6 5 10 10 C 1.31406 * 121.86069 * 179.69115 * 9 8 6 11 11 C 1.39789 * 121.40713 * 0.63104 * 10 9 8 12 12 C 1.48306 * 120.43422 * 179.67336 * 11 10 9 13 13 C 1.39278 * 120.15886 * 129.97953 * 12 11 10 14 14 C 1.38021 * 119.94528 * 180.28218 * 13 12 11 15 15 C 1.38431 * 120.27132 * 359.74100 * 14 13 12 16 16 C 1.38121 * 120.32021 * 359.97438 * 15 14 13 17 17 C 1.38748 * 120.04945 * 0.02562 * 16 15 14 18 18 O 1.35674 * 120.13627 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99986 * 5.59846 * 18 17 16 20 20 H 1.08000 * 120.00037 * 354.93290 * 19 18 17 21 21 C 1.38647 * 120.00043 * 174.93447 * 19 18 17 22 22 N 1.31562 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47459 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47072 * 120.00063 * 23 21 19 26 26 H 1.48500 * 109.47293 * 239.99819 * 23 21 19 27 27 C 1.39374 * 119.13557 * 359.40361 * 11 10 9 28 28 C 1.39513 * 117.95349 * 0.27837 * 27 11 10 29 29 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47158 * 299.99811 * 1 2 3 31 31 H 1.09000 * 109.47686 * 60.00245 * 1 2 3 32 32 H 1.09001 * 109.46459 * 240.00264 * 2 1 3 33 33 H 1.08999 * 109.46837 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47208 * 299.99772 * 3 2 1 35 35 H 1.08996 * 109.47041 * 60.00117 * 3 2 1 36 36 H 1.08002 * 125.03242 * 0.05630 * 5 4 2 37 37 H 1.08008 * 119.29885 * 180.31112 * 10 9 8 38 38 H 1.08000 * 120.02507 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.86245 * 179.76883 * 14 13 12 40 40 H 1.07995 * 119.84292 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.97878 * 180.02562 * 16 15 14 42 42 H 0.96997 * 119.99812 * 180.02562 * 22 21 19 43 43 H 1.08002 * 121.02072 * 180.29313 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.7917 -0.3682 2.5056 6 7 2.4139 -1.2478 3.3504 7 1 2.3836 -1.2045 4.3189 8 6 3.0866 -2.2019 2.6249 9 7 3.8263 -3.2481 2.9717 10 6 4.3748 -4.0373 2.0756 11 6 4.2165 -3.8055 0.7062 12 6 4.8513 -4.7061 -0.2865 13 6 4.0991 -5.2360 -1.3321 14 6 4.6930 -6.0783 -2.2501 15 6 6.0360 -6.3952 -2.1397 16 6 6.7938 -5.8713 -1.1106 17 6 6.2103 -5.0232 -0.1803 18 8 6.9529 -4.5079 0.8316 19 6 8.2762 -4.7646 0.8118 20 1 8.6873 -5.4236 0.0614 21 6 9.1094 -4.1827 1.7549 22 7 8.6085 -3.3805 2.6695 23 14 10.9428 -4.5391 1.7280 24 1 11.2507 -5.4656 0.6091 25 1 11.6910 -3.2702 1.5393 26 1 11.3446 -5.1640 3.0137 27 6 3.4496 -2.7203 0.2859 28 6 2.8764 -1.9067 1.2637 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.1951 0.4757 2.8191 37 1 4.9649 -4.8802 2.4042 38 1 3.0510 -4.9914 -1.4220 39 1 4.1076 -6.4915 -3.0582 40 1 6.4937 -7.0547 -2.8621 41 1 7.8412 -6.1219 -1.0299 42 1 9.1915 -2.9731 3.3290 43 1 3.3033 -2.5156 -0.7644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243582826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:11 Heat of formation + Delta-G solvation = 55.376790 kcal Electronic energy + Delta-G solvation = -26263.138589 eV Core-core repulsion = 22660.047144 eV Total energy + Delta-G solvation = -3603.091445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16494 -39.17842 -37.41050 -36.32673 -35.41844 -32.59023 -32.27206 -30.84728 -29.11279 -28.26827 -27.76645 -27.12231 -25.37274 -23.44685 -22.63319 -22.51016 -21.36930 -20.46971 -18.50861 -17.98396 -17.80255 -17.12845 -16.17391 -15.62235 -14.86027 -14.73409 -14.48346 -14.41085 -14.18932 -14.00052 -13.73514 -13.54979 -13.18856 -13.11840 -12.83721 -12.58580 -12.42659 -12.26932 -12.00854 -11.72187 -11.69677 -11.32905 -11.20589 -11.15556 -10.90699 -10.77965 -10.72612 -10.61555 -10.43239 -9.80543 -9.38836 -8.89240 -8.83092 -8.38841 -7.71463 -7.59599 -7.05640 -6.45094 -4.04177 1.45772 1.67264 2.32535 2.41141 2.93221 3.12080 3.13570 3.14280 3.18896 3.95097 4.39098 4.59516 4.77283 4.85811 4.97132 5.06624 5.12654 5.22985 5.25781 5.39148 5.46978 5.52963 5.59396 5.61768 5.67274 5.75372 5.80479 5.86874 5.90172 5.99031 6.11453 6.15544 6.23279 6.28307 6.31917 6.47919 6.66526 6.73045 6.80707 6.89100 6.92221 7.09445 7.21654 7.35213 7.35769 7.45681 7.66133 7.78335 7.97600 8.60319 8.99301 9.67339 10.71178 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004035 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.896135 B = 6938.302730 C = 8279.913957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.142 4.142 4 C -0.155 4.155 5 C 0.051 3.949 6 N -0.585 5.585 7 H 0.415 0.585 8 C 0.279 3.721 9 N -0.499 5.499 10 C 0.183 3.817 11 C -0.083 4.083 12 C -0.125 4.125 13 C -0.060 4.060 14 C -0.214 4.214 15 C -0.070 4.070 16 C -0.232 4.232 17 C 0.164 3.836 18 O -0.165 6.165 19 C -0.395 4.395 20 H 0.093 0.907 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.938 3.062 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.033 4.033 28 C -0.148 4.148 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.269 0.731 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 4.906 -4.034 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 C -0.200 4.200 4 C -0.163 4.163 5 C -0.075 4.075 6 N -0.191 5.191 7 H 0.252 0.748 8 C 0.047 3.953 9 N -0.212 5.212 10 C 0.017 3.983 11 C -0.087 4.087 12 C -0.127 4.127 13 C -0.078 4.078 14 C -0.233 4.233 15 C -0.088 4.088 16 C -0.252 4.252 17 C 0.109 3.891 18 O -0.068 6.068 19 C -0.471 4.471 20 H 0.110 0.890 21 C -0.163 4.163 22 N -0.486 5.486 23 Si 0.763 3.237 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.060 4.060 28 C -0.155 4.155 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.185 0.815 37 H 0.178 0.822 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.146 0.854 42 H 0.079 0.921 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.088 5.112 -2.566 14.284 hybrid contribution 1.047 -0.001 -0.388 1.117 sum -12.041 5.111 -2.954 13.410 Atomic orbital electron populations 1.21844 0.94924 1.01767 1.01272 1.19430 0.94834 0.94955 0.94829 1.21854 1.01554 0.95344 1.01230 1.20046 1.04607 0.97857 0.93829 1.21360 1.00872 0.96015 0.89210 1.41399 1.45092 1.24018 1.08639 0.74821 1.18440 0.96605 0.92011 0.88289 1.66453 1.10790 1.04331 1.39583 1.22585 0.92495 0.95586 0.87660 1.19293 0.99054 0.96271 0.94046 1.17630 0.91306 1.04960 0.98844 1.20703 0.98100 0.95986 0.93049 1.20513 0.95412 1.05351 1.02066 1.20813 0.93829 0.97633 0.96556 1.21115 1.01264 1.04191 0.98600 1.19323 0.90442 0.91404 0.87941 1.83977 1.20203 1.64345 1.38253 1.21375 0.79588 1.29576 1.16553 0.88979 1.25273 1.00116 0.95660 0.95244 1.70069 1.35907 1.27672 1.14976 0.85686 0.80860 0.78493 0.78629 1.19078 1.20213 1.20141 1.20878 0.94615 0.92092 0.98395 1.19592 1.03873 0.98651 0.93365 0.92635 0.92912 0.92778 0.90606 0.92437 0.92773 0.92898 0.81497 0.82168 0.86951 0.87498 0.87472 0.85361 0.92073 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.07 37.16 0.34 -0.94 16 2 C -0.02 -0.24 3.31 -91.77 -0.30 -0.54 16 3 C -0.14 -1.42 9.07 37.16 0.34 -1.08 16 4 C -0.16 -2.18 5.05 -102.74 -0.52 -2.69 16 5 C 0.05 0.63 11.19 -16.70 -0.19 0.44 16 6 N -0.59 -8.42 6.05 -12.11 -0.07 -8.49 16 7 H 0.41 4.84 8.96 -40.82 -0.37 4.47 16 8 C 0.28 5.26 8.42 -155.57 -1.31 3.95 16 9 N -0.50 -10.69 10.37 -11.98 -0.12 -10.82 16 10 C 0.18 4.03 9.94 -17.15 -0.17 3.86 16 11 C -0.08 -1.73 5.28 -104.75 -0.55 -2.28 16 12 C -0.13 -2.62 5.51 -104.72 -0.58 -3.20 16 13 C -0.06 -1.07 9.53 -39.27 -0.37 -1.44 16 14 C -0.21 -3.62 10.03 -39.59 -0.40 -4.01 16 15 C -0.07 -1.25 10.03 -39.55 -0.40 -1.65 16 16 C -0.23 -4.92 9.16 -39.44 -0.36 -5.28 16 17 C 0.16 3.85 6.56 -38.75 -0.25 3.59 16 18 O -0.17 -4.52 8.14 0.33 0.00 -4.52 16 19 C -0.39 -10.74 9.49 30.88 0.29 -10.45 16 20 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 21 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 22 N -0.85 -24.79 13.67 55.48 0.76 -24.03 16 23 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 C -0.03 -0.62 9.71 -38.68 -0.38 -0.99 16 28 C -0.15 -2.65 6.36 -105.13 -0.67 -3.32 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.43 8.02 -51.93 -0.42 0.01 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.47 8.02 -51.93 -0.42 0.05 16 36 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.16 3.66 7.70 -52.48 -0.40 3.26 16 38 H 0.11 1.71 8.04 -52.49 -0.42 1.29 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -31.91 365.15 -10.07 -41.98 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.53 Total: 10.01 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -5.58 Total: -24.99 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.56 Total: -43.34 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.91 -10.07 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243582826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.358 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds