Wall clock time and date at job start Sat Apr 11 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.50698 * 109.47240 * 120.00316 * 2 1 3 5 5 C 1.34212 * 126.56924 * 299.94103 * 4 2 1 6 6 N 1.36908 * 109.93419 * 180.02562 * 5 4 2 7 7 H 0.96998 * 124.97347 * 180.02562 * 6 5 4 8 8 C 1.37446 * 110.04508 * 359.97438 * 6 5 4 9 9 N 1.32732 * 132.99693 * 179.97438 * 8 6 5 10 10 C 1.31406 * 121.86069 * 179.69115 * 9 8 6 11 11 C 1.39789 * 121.40713 * 0.63104 * 10 9 8 12 12 C 1.48306 * 120.43422 * 179.67336 * 11 10 9 13 13 C 1.39278 * 120.15886 * 129.97953 * 12 11 10 14 14 C 1.38021 * 119.94528 * 180.28218 * 13 12 11 15 15 C 1.38431 * 120.27132 * 359.74100 * 14 13 12 16 16 C 1.38121 * 120.32021 * 359.97438 * 15 14 13 17 17 C 1.38748 * 120.04945 * 0.02562 * 16 15 14 18 18 O 1.35674 * 120.13627 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99986 * 5.59846 * 18 17 16 20 20 H 1.08000 * 120.00037 * 354.93290 * 19 18 17 21 21 C 1.38647 * 120.00043 * 174.93447 * 19 18 17 22 22 N 1.31562 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47459 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47072 * 120.00063 * 23 21 19 26 26 H 1.48500 * 109.47293 * 239.99819 * 23 21 19 27 27 C 1.39374 * 119.13557 * 359.40361 * 11 10 9 28 28 C 1.39513 * 117.95349 * 0.27837 * 27 11 10 29 29 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47158 * 299.99811 * 1 2 3 31 31 H 1.09000 * 109.47686 * 60.00245 * 1 2 3 32 32 H 1.09001 * 109.46459 * 240.00264 * 2 1 3 33 33 H 1.08999 * 109.46837 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47208 * 299.99772 * 3 2 1 35 35 H 1.08996 * 109.47041 * 60.00117 * 3 2 1 36 36 H 1.08002 * 125.03242 * 0.05630 * 5 4 2 37 37 H 1.08008 * 119.29885 * 180.31112 * 10 9 8 38 38 H 1.08000 * 120.02507 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.86245 * 179.76883 * 14 13 12 40 40 H 1.07995 * 119.84292 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.97878 * 180.02562 * 16 15 14 42 42 H 0.96997 * 119.99812 * 180.02562 * 22 21 19 43 43 H 1.08002 * 121.02072 * 180.29313 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.7917 -0.3682 2.5056 6 7 2.4139 -1.2478 3.3504 7 1 2.3836 -1.2045 4.3189 8 6 3.0866 -2.2019 2.6249 9 7 3.8263 -3.2481 2.9717 10 6 4.3748 -4.0373 2.0756 11 6 4.2165 -3.8055 0.7062 12 6 4.8513 -4.7061 -0.2865 13 6 4.0991 -5.2360 -1.3321 14 6 4.6930 -6.0783 -2.2501 15 6 6.0360 -6.3952 -2.1397 16 6 6.7938 -5.8713 -1.1106 17 6 6.2103 -5.0232 -0.1803 18 8 6.9529 -4.5079 0.8316 19 6 8.2762 -4.7646 0.8118 20 1 8.6873 -5.4236 0.0614 21 6 9.1094 -4.1827 1.7549 22 7 8.6085 -3.3805 2.6695 23 14 10.9428 -4.5391 1.7280 24 1 11.2507 -5.4656 0.6091 25 1 11.6910 -3.2702 1.5393 26 1 11.3446 -5.1640 3.0137 27 6 3.4496 -2.7203 0.2859 28 6 2.8764 -1.9067 1.2637 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.1951 0.4757 2.8191 37 1 4.9649 -4.8802 2.4042 38 1 3.0510 -4.9914 -1.4220 39 1 4.1076 -6.4915 -3.0582 40 1 6.4937 -7.0547 -2.8621 41 1 7.8412 -6.1219 -1.0299 42 1 9.1915 -2.9731 3.3290 43 1 3.3033 -2.5156 -0.7644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243582826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:10 Heat of formation + Delta-G solvation = 37.909382 kcal Electronic energy + Delta-G solvation = -26263.896033 eV Core-core repulsion = 22660.047144 eV Total energy + Delta-G solvation = -3603.848889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47888 -40.81859 -38.87791 -37.96294 -36.38017 -34.30557 -33.99387 -32.24487 -30.69859 -29.45169 -29.29749 -27.83163 -27.31847 -24.88802 -24.10550 -23.48809 -23.01643 -21.96470 -19.81128 -19.66151 -19.02907 -18.79329 -17.59908 -17.12360 -16.44483 -16.24853 -16.06500 -15.86861 -15.42055 -15.30581 -15.07609 -14.86221 -14.71048 -14.30864 -14.16274 -13.94843 -13.87664 -13.53983 -13.35515 -13.17381 -12.98499 -12.81588 -12.53723 -12.35370 -12.27350 -12.10793 -12.02209 -11.96460 -11.51368 -11.24070 -11.13092 -10.80494 -10.38439 -9.87948 -9.24008 -8.87404 -8.63110 -8.43920 -6.10965 0.03835 0.15809 0.74792 0.88326 1.33785 1.42099 1.51505 1.75964 1.92024 2.16983 2.81761 2.95762 3.20686 3.52241 3.55067 3.76044 3.77122 3.97078 4.08750 4.22054 4.28321 4.31043 4.39568 4.47271 4.54343 4.56138 4.70293 4.71185 4.80524 4.93164 4.94751 5.09644 5.12391 5.15596 5.17873 5.24328 5.28394 5.36585 5.47233 5.50698 5.54979 5.69244 5.72418 5.75984 5.79726 6.01474 6.08757 6.25564 6.48192 7.00139 7.11914 7.82220 8.77565 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004035 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.896135 B = 6938.302730 C = 8279.913957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.020 4.020 3 C -0.140 4.140 4 C -0.170 4.170 5 C 0.078 3.922 6 N -0.577 5.577 7 H 0.428 0.572 8 C 0.249 3.751 9 N -0.523 5.523 10 C 0.153 3.847 11 C -0.101 4.101 12 C -0.132 4.132 13 C -0.059 4.059 14 C -0.188 4.188 15 C -0.068 4.068 16 C -0.246 4.246 17 C 0.125 3.875 18 O -0.214 6.214 19 C -0.412 4.412 20 H 0.102 0.898 21 C -0.020 4.020 22 N -0.914 5.914 23 Si 1.014 2.986 24 H -0.249 1.249 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.034 4.034 28 C -0.156 4.156 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.221 0.779 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.120 0.880 42 H 0.268 0.732 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.753 5.922 -6.578 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.197 4.197 4 C -0.177 4.177 5 C -0.048 4.048 6 N -0.184 5.184 7 H 0.267 0.733 8 C 0.016 3.984 9 N -0.236 5.236 10 C -0.013 4.013 11 C -0.104 4.104 12 C -0.134 4.134 13 C -0.077 4.077 14 C -0.207 4.207 15 C -0.086 4.086 16 C -0.266 4.266 17 C 0.073 3.927 18 O -0.119 6.119 19 C -0.488 4.488 20 H 0.119 0.881 21 C -0.218 4.218 22 N -0.551 5.551 23 Si 0.834 3.166 24 H -0.172 1.172 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.060 4.060 28 C -0.163 4.163 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.237 0.763 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.077 0.923 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.682 6.095 -5.152 17.596 hybrid contribution 1.491 -0.309 0.240 1.542 sum -14.191 5.787 -4.911 16.093 Atomic orbital electron populations 1.21805 0.92873 1.01662 1.02910 1.19488 0.96388 0.95131 0.92873 1.21843 1.00113 0.94764 1.03003 1.20421 1.04544 0.96848 0.95936 1.22229 0.98769 0.95584 0.88195 1.41562 1.44166 1.23078 1.09626 0.73303 1.18797 0.97236 0.92392 0.89971 1.66282 1.11702 1.05521 1.40109 1.22205 0.94124 0.96103 0.88837 1.19341 1.00115 0.97596 0.93368 1.17996 0.90676 1.05043 0.99686 1.21124 0.99377 0.95340 0.91884 1.21100 0.95101 1.02689 1.01781 1.21242 0.94285 0.97238 0.95803 1.21261 1.01432 1.04424 0.99455 1.19906 0.91552 0.92677 0.88519 1.83976 1.20347 1.66864 1.40740 1.21852 0.80371 1.29707 1.16871 0.88092 1.26490 1.05237 0.95385 0.94642 1.70242 1.37711 1.30448 1.16737 0.84595 0.74247 0.78641 0.79164 1.17246 1.19734 1.19615 1.21096 0.93877 0.91317 0.99716 1.20070 1.03792 0.99732 0.92737 0.93604 0.91281 0.91201 0.91700 0.94678 0.91043 0.91171 0.76258 0.85239 0.83822 0.82849 0.83647 0.86261 0.92281 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.07 71.98 0.65 -1.28 16 2 C -0.02 -0.38 3.31 -11.54 -0.04 -0.42 16 3 C -0.14 -2.35 9.07 71.98 0.65 -1.70 16 4 C -0.17 -4.40 5.05 -18.64 -0.09 -4.50 16 5 C 0.08 1.65 11.19 82.98 0.93 2.58 16 6 N -0.58 -15.91 6.05 -192.22 -1.16 -17.08 16 7 H 0.43 9.45 8.96 -92.71 -0.83 8.62 16 8 C 0.25 9.68 8.42 133.91 1.13 10.81 16 9 N -0.52 -24.19 10.37 -191.82 -1.99 -26.18 16 10 C 0.15 7.42 9.94 85.13 0.85 8.27 16 11 C -0.10 -4.44 5.28 -19.95 -0.11 -4.54 16 12 C -0.13 -5.71 5.51 -19.93 -0.11 -5.82 16 13 C -0.06 -1.99 9.53 22.47 0.21 -1.78 16 14 C -0.19 -5.62 10.03 22.26 0.22 -5.39 16 15 C -0.07 -2.25 10.03 22.29 0.22 -2.03 16 16 C -0.25 -10.63 9.16 22.36 0.20 -10.43 16 17 C 0.12 6.20 6.56 22.81 0.15 6.35 16 18 O -0.21 -12.72 8.14 -21.73 -0.18 -12.90 16 19 C -0.41 -24.03 9.49 67.92 0.64 -23.38 16 20 H 0.10 5.41 5.21 -2.91 -0.02 5.40 16 21 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 22 N -0.91 -57.38 13.67 21.61 0.30 -57.09 16 23 Si 1.01 43.84 29.55 68.60 2.03 45.86 16 24 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 C -0.03 -1.28 9.71 22.85 0.22 -1.06 16 28 C -0.16 -5.61 6.36 -20.19 -0.13 -5.74 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.77 8.02 -2.39 -0.02 0.75 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.93 8.02 -2.39 -0.02 0.91 16 36 H 0.22 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.13 6.84 7.70 -2.91 -0.02 6.82 16 38 H 0.14 3.92 8.04 -2.91 -0.02 3.89 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.15 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -78.89 365.15 5.29 -73.60 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.21 Total: 34.49 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 6.08 Total: -40.71 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -2.86 Total: -100.35 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.18 Total: -12.90 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -78.89 5.29 -73.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243582826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.513 kcal (2) G-P(sol) polarization free energy of solvation -78.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds