Wall clock time and date at job start Sat Apr 11 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47062 * 2 1 4 4 C 1.37481 * 123.35024 * 265.26860 * 3 2 1 5 5 C 1.33815 * 115.09702 * 180.17694 * 4 3 2 6 6 S 1.70621 * 110.95659 * 359.59417 * 5 4 3 7 7 C 1.36652 * 123.35108 * 85.00383 * 3 2 1 8 8 C 1.46575 * 125.45719 * 0.03497 * 7 3 2 9 9 O 1.21705 * 120.00053 * 50.97299 * 8 7 3 10 10 N 1.34778 * 120.00053 * 230.96592 * 8 7 3 11 11 C 1.46917 * 120.62988 * 4.85637 * 10 8 7 12 12 C 1.53626 * 108.54486 * 126.36736 * 11 10 8 13 13 C 1.53044 * 109.23815 * 54.85619 * 12 11 10 14 14 C 1.53039 * 109.54164 * 298.51545 * 13 12 11 15 15 C 1.46925 * 120.63145 * 185.14193 * 10 8 7 16 16 H 1.08997 * 109.58899 * 113.79680 * 15 10 8 17 17 C 1.52999 * 109.58517 * 353.51298 * 15 10 8 18 18 N 1.46500 * 109.47193 * 78.53243 * 17 15 10 19 19 C 1.36937 * 119.99898 * 183.65492 * 18 17 15 20 20 H 1.07995 * 120.00155 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99606 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99741 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00472 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47429 * 89.99472 * 23 21 19 25 25 H 1.48498 * 109.47264 * 209.99871 * 23 21 19 26 26 H 1.48502 * 109.46687 * 330.00092 * 23 21 19 27 27 H 1.08989 * 109.47654 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47005 * 300.00340 * 1 2 3 29 29 H 1.09005 * 109.47069 * 59.99435 * 1 2 3 30 30 H 1.09000 * 109.46757 * 240.00313 * 2 1 3 31 31 H 1.08995 * 109.46882 * 120.00025 * 2 1 3 32 32 H 1.07993 * 122.45083 * 0.02562 * 4 3 2 33 33 H 1.08001 * 124.52156 * 179.84830 * 5 4 3 34 34 H 1.08997 * 109.59235 * 246.20048 * 11 10 8 35 35 H 1.09002 * 109.58976 * 6.63264 * 11 10 8 36 36 H 1.09002 * 109.63355 * 294.87002 * 12 11 10 37 37 H 1.08994 * 109.43708 * 174.72730 * 12 11 10 38 38 H 1.09004 * 109.46368 * 178.49016 * 13 12 11 39 39 H 1.09006 * 109.44577 * 58.52813 * 13 12 11 40 40 H 1.09001 * 109.49299 * 301.41483 * 14 13 12 41 41 H 1.08998 * 109.52630 * 181.33633 * 14 13 12 42 42 H 1.09007 * 109.46979 * 198.53341 * 17 15 10 43 43 H 1.08995 * 109.47379 * 318.52955 * 17 15 10 44 44 H 0.97002 * 119.99652 * 3.65571 * 18 17 15 45 45 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3736 2.1018 -1.1445 5 6 2.8036 3.3544 -0.9528 6 16 2.7922 3.7564 0.7054 7 6 2.1890 2.1622 1.1371 8 6 1.9009 1.7021 2.4986 9 8 2.3641 0.6491 2.8959 10 7 1.1231 2.4452 3.3106 11 6 0.4706 3.6638 2.8129 12 6 -1.0342 3.5672 3.1066 13 6 -1.2408 3.3095 4.6010 14 6 -0.5888 1.9796 4.9861 15 6 0.9165 2.0553 4.7121 16 1 1.3705 2.7976 5.3686 17 6 1.5560 0.6884 4.9638 18 7 3.0037 0.8481 5.1219 19 6 3.8006 -0.2538 5.2827 20 1 3.3619 -1.2406 5.2933 21 6 5.1723 -0.1024 5.4321 22 7 5.9384 -1.1615 5.5861 23 14 5.9311 1.6045 5.4145 24 1 5.9715 2.1426 6.7980 25 1 7.3117 1.5269 4.8730 26 1 5.1132 2.5009 4.5584 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3022 1.6575 -2.1262 33 1 3.1124 4.0232 -1.7426 34 1 0.8890 4.5346 3.3177 35 1 0.6296 3.7506 1.7381 36 1 -1.4674 2.7478 2.5329 37 1 -1.5189 4.5029 2.8283 38 1 -2.3082 3.2669 4.8180 39 1 -0.7856 4.1168 5.1747 40 1 -1.0262 1.1753 4.3946 41 1 -0.7565 1.7849 6.0453 42 1 1.1372 0.2528 5.8710 43 1 1.3533 0.0312 4.1182 44 1 3.3976 1.7345 5.1128 45 1 6.8969 -1.0557 5.6908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281892883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:27 Heat of formation + Delta-G solvation = 41.900393 kcal Electronic energy + Delta-G solvation = -26793.238422 eV Core-core repulsion = 23325.006548 eV Total energy + Delta-G solvation = -3468.231874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35454 -38.37441 -36.81638 -34.62804 -32.80964 -32.72462 -31.97341 -30.20286 -29.16104 -26.45581 -25.22481 -24.37904 -22.59406 -22.33093 -21.77157 -20.78757 -19.89275 -18.09168 -17.90445 -17.05561 -15.95289 -15.69425 -15.21201 -15.06659 -14.56574 -14.31129 -14.06926 -13.90627 -13.77911 -13.57768 -13.30681 -13.10908 -12.75372 -12.61257 -12.56541 -12.27766 -12.08057 -11.98110 -11.77278 -11.46041 -11.25719 -11.08726 -10.91025 -10.86361 -10.75208 -10.67239 -10.64823 -10.25836 -9.98833 -9.36164 -8.88492 -8.72653 -8.37269 -8.32501 -8.16651 -6.84212 -5.52102 -2.80712 0.74305 1.48100 1.95642 2.54578 3.19008 3.45843 3.50718 3.53052 3.57381 4.64304 4.73796 4.80200 4.81056 4.82999 4.94018 5.05617 5.17694 5.21365 5.30668 5.38306 5.44074 5.47001 5.52639 5.68655 5.69841 5.74342 5.78053 5.79846 5.84581 5.92232 6.01098 6.03834 6.04565 6.07114 6.14033 6.23016 6.35315 6.45165 6.54551 6.57960 6.85492 7.27703 7.73031 8.24377 8.64116 8.70695 9.46489 10.19697 10.40355 11.68008 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.006250 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.164346 B = 4478.714221 C = 5529.614813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.045 4.045 4 C -0.136 4.136 5 C -0.251 4.251 6 S 0.189 5.811 7 C -0.239 4.239 8 C 0.565 3.435 9 O -0.439 6.439 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.126 4.126 15 C 0.140 3.860 16 H 0.067 0.933 17 C 0.149 3.851 18 N -0.735 5.735 19 C -0.202 4.202 20 H 0.087 0.913 21 C -0.006 4.006 22 N -0.944 5.944 23 Si 0.880 3.120 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.283 1.283 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.016 0.984 43 H 0.075 0.925 44 H 0.353 0.647 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.425 13.151 -12.633 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.059 4.059 4 C -0.167 4.167 5 C -0.388 4.388 6 S 0.458 5.542 7 C -0.359 4.359 8 C 0.349 3.651 9 O -0.309 6.309 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.169 4.169 13 C -0.156 4.156 14 C -0.165 4.165 15 C 0.037 3.963 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.379 5.379 19 C -0.333 4.333 20 H 0.105 0.895 21 C -0.199 4.199 22 N -0.595 5.595 23 Si 0.712 3.288 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.209 1.209 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.092 0.908 44 H 0.185 0.815 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.677 13.648 -11.586 23.797 hybrid contribution 0.525 0.294 -1.127 1.277 sum -15.152 13.942 -12.713 24.199 Atomic orbital electron populations 1.21670 0.94772 1.01717 1.01512 1.20387 0.95845 0.91045 1.04280 1.19343 0.98897 0.97171 0.90483 1.19847 1.03332 0.94114 0.99443 1.25147 1.09937 1.01809 1.01867 1.83150 1.61208 1.11529 0.98351 1.24709 1.14126 0.98787 0.98317 1.17099 0.79996 0.85221 0.82761 1.91141 1.47507 1.20754 1.71518 1.47836 1.49468 1.26017 1.11312 1.21929 0.92719 0.87357 1.00266 1.21959 0.95734 1.02067 0.97159 1.21518 1.00494 0.97848 0.95747 1.21898 0.94881 0.97671 1.02019 1.21605 0.95055 0.99129 0.80475 0.91466 1.21244 0.84908 0.92695 0.98957 1.42565 1.02012 1.05057 1.88299 1.18978 0.88582 0.87617 1.38113 0.89536 1.24558 0.95932 0.95934 1.03510 1.69694 1.04026 1.27021 1.58750 0.86577 0.78653 0.86261 0.77286 1.21605 1.22128 1.20922 0.92245 0.92846 0.93026 0.90902 0.88827 0.84269 0.81877 0.91680 0.89822 0.91489 0.91103 0.91824 0.91879 0.91324 0.90585 0.96660 0.90761 0.81464 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.24 16 2 C -0.08 -1.05 5.94 -27.88 -0.17 -1.22 16 3 C -0.05 -0.65 5.16 -105.47 -0.54 -1.19 16 4 C -0.14 -1.62 9.96 -41.41 -0.41 -2.03 16 5 C -0.25 -2.78 10.92 29.18 0.32 -2.47 16 6 S 0.19 2.43 20.89 -107.50 -2.25 0.18 16 7 C -0.24 -3.79 5.02 -36.80 -0.18 -3.98 16 8 C 0.56 10.39 6.95 -12.90 -0.09 10.30 16 9 O -0.44 -10.08 9.85 5.18 0.05 -10.03 16 10 N -0.61 -9.44 2.97 -166.53 -0.49 -9.93 16 11 C 0.10 1.17 5.84 -3.49 -0.02 1.15 16 12 C -0.13 -1.22 6.10 -26.38 -0.16 -1.38 16 13 C -0.12 -1.14 5.88 -26.69 -0.16 -1.29 16 14 C -0.13 -1.53 5.30 -26.61 -0.14 -1.67 16 15 C 0.14 2.25 2.92 -67.60 -0.20 2.05 16 16 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 17 C 0.15 3.11 4.94 -4.04 -0.02 3.09 16 18 N -0.74 -18.86 3.73 -59.91 -0.22 -19.08 16 19 C -0.20 -6.15 10.05 -15.06 -0.15 -6.30 16 20 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.94 -31.63 13.97 55.49 0.78 -30.85 16 23 Si 0.88 24.06 27.74 -169.99 -4.71 19.34 16 24 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.29 -8.15 7.11 56.52 0.40 -7.75 16 26 H -0.28 -7.44 6.52 56.52 0.37 -7.07 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.09 1.61 6.73 -51.93 -0.35 1.26 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.93 5.03 -51.87 -0.26 0.67 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.02 0.33 8.02 -51.93 -0.42 -0.09 16 43 H 0.08 1.69 5.54 -53.95 -0.30 1.39 16 44 H 0.35 9.06 5.47 -40.82 -0.22 8.84 16 45 H 0.25 8.14 8.31 -40.82 -0.34 7.80 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -35.87 361.12 -10.12 -45.99 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.05 Total: 5.40 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.65 Total: -6.47 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.06 Total: -59.86 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.05 Total: -10.03 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.71 Total: 19.34 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.25 Total: 0.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.87 -10.12 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281892883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.889 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds