Wall clock time and date at job start Sat Apr 11 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47062 * 2 1 4 4 C 1.37481 * 123.35024 * 265.26860 * 3 2 1 5 5 C 1.33815 * 115.09702 * 180.17694 * 4 3 2 6 6 S 1.70621 * 110.95659 * 359.59417 * 5 4 3 7 7 C 1.36652 * 123.35108 * 85.00383 * 3 2 1 8 8 C 1.46575 * 125.45719 * 0.03497 * 7 3 2 9 9 O 1.21705 * 120.00053 * 50.97299 * 8 7 3 10 10 N 1.34778 * 120.00053 * 230.96592 * 8 7 3 11 11 C 1.46917 * 120.62988 * 4.85637 * 10 8 7 12 12 C 1.53626 * 108.54486 * 126.36736 * 11 10 8 13 13 C 1.53044 * 109.23815 * 54.85619 * 12 11 10 14 14 C 1.53039 * 109.54164 * 298.51545 * 13 12 11 15 15 C 1.46925 * 120.63145 * 185.14193 * 10 8 7 16 16 H 1.08997 * 109.58899 * 113.79680 * 15 10 8 17 17 C 1.52999 * 109.58517 * 353.51298 * 15 10 8 18 18 N 1.46500 * 109.47193 * 78.53243 * 17 15 10 19 19 C 1.36937 * 119.99898 * 183.65492 * 18 17 15 20 20 H 1.07995 * 120.00155 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99606 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99741 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00472 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47429 * 89.99472 * 23 21 19 25 25 H 1.48498 * 109.47264 * 209.99871 * 23 21 19 26 26 H 1.48502 * 109.46687 * 330.00092 * 23 21 19 27 27 H 1.08989 * 109.47654 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47005 * 300.00340 * 1 2 3 29 29 H 1.09005 * 109.47069 * 59.99435 * 1 2 3 30 30 H 1.09000 * 109.46757 * 240.00313 * 2 1 3 31 31 H 1.08995 * 109.46882 * 120.00025 * 2 1 3 32 32 H 1.07993 * 122.45083 * 0.02562 * 4 3 2 33 33 H 1.08001 * 124.52156 * 179.84830 * 5 4 3 34 34 H 1.08997 * 109.59235 * 246.20048 * 11 10 8 35 35 H 1.09002 * 109.58976 * 6.63264 * 11 10 8 36 36 H 1.09002 * 109.63355 * 294.87002 * 12 11 10 37 37 H 1.08994 * 109.43708 * 174.72730 * 12 11 10 38 38 H 1.09004 * 109.46368 * 178.49016 * 13 12 11 39 39 H 1.09006 * 109.44577 * 58.52813 * 13 12 11 40 40 H 1.09001 * 109.49299 * 301.41483 * 14 13 12 41 41 H 1.08998 * 109.52630 * 181.33633 * 14 13 12 42 42 H 1.09007 * 109.46979 * 198.53341 * 17 15 10 43 43 H 1.08995 * 109.47379 * 318.52955 * 17 15 10 44 44 H 0.97002 * 119.99652 * 3.65571 * 18 17 15 45 45 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3736 2.1018 -1.1445 5 6 2.8036 3.3544 -0.9528 6 16 2.7922 3.7564 0.7054 7 6 2.1890 2.1622 1.1371 8 6 1.9009 1.7021 2.4986 9 8 2.3641 0.6491 2.8959 10 7 1.1231 2.4452 3.3106 11 6 0.4706 3.6638 2.8129 12 6 -1.0342 3.5672 3.1066 13 6 -1.2408 3.3095 4.6010 14 6 -0.5888 1.9796 4.9861 15 6 0.9165 2.0553 4.7121 16 1 1.3705 2.7976 5.3686 17 6 1.5560 0.6884 4.9638 18 7 3.0037 0.8481 5.1219 19 6 3.8006 -0.2538 5.2827 20 1 3.3619 -1.2406 5.2933 21 6 5.1723 -0.1024 5.4321 22 7 5.9384 -1.1615 5.5861 23 14 5.9311 1.6045 5.4145 24 1 5.9715 2.1426 6.7980 25 1 7.3117 1.5269 4.8730 26 1 5.1132 2.5009 4.5584 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3022 1.6575 -2.1262 33 1 3.1124 4.0232 -1.7426 34 1 0.8890 4.5346 3.3177 35 1 0.6296 3.7506 1.7381 36 1 -1.4674 2.7478 2.5329 37 1 -1.5189 4.5029 2.8283 38 1 -2.3082 3.2669 4.8180 39 1 -0.7856 4.1168 5.1747 40 1 -1.0262 1.1753 4.3946 41 1 -0.7565 1.7849 6.0453 42 1 1.1372 0.2528 5.8710 43 1 1.3533 0.0312 4.1182 44 1 3.3976 1.7345 5.1128 45 1 6.8969 -1.0557 5.6908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281892883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:26 Heat of formation + Delta-G solvation = 18.752226 kcal Electronic energy + Delta-G solvation = -26794.242202 eV Core-core repulsion = 23325.006548 eV Total energy + Delta-G solvation = -3469.235654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62229 -39.40984 -38.01868 -36.53753 -34.02985 -33.81039 -33.66332 -31.98501 -30.20537 -27.90471 -26.45660 -25.56888 -24.12874 -23.40094 -23.21525 -22.07603 -20.97692 -19.74965 -19.12430 -18.59269 -17.13530 -16.94149 -16.67074 -16.26888 -16.09351 -15.70587 -15.39480 -15.07070 -14.80432 -14.72306 -14.62899 -14.54936 -14.14219 -13.99205 -13.81591 -13.72708 -13.45925 -13.15931 -12.96367 -12.88538 -12.66770 -12.41279 -12.28246 -12.07078 -11.98414 -11.84537 -11.78144 -11.68736 -11.53553 -11.42727 -11.01491 -10.05841 -9.68462 -9.50995 -9.33740 -8.98252 -7.96120 -5.21929 -0.28926 0.43616 0.99457 1.27199 1.33670 1.39595 1.54223 1.99075 2.20542 2.49412 3.34602 3.53263 3.66708 3.86360 3.88450 3.97257 4.05596 4.13915 4.25311 4.28903 4.32268 4.35855 4.41473 4.50496 4.56111 4.69383 4.73880 4.84671 4.86055 4.94459 5.03854 5.04952 5.07269 5.10216 5.12777 5.22215 5.25025 5.30898 5.44496 5.48952 5.50510 5.77619 5.82542 6.26574 6.49154 7.14413 7.37366 7.92516 8.11609 9.27677 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.006250 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.164346 B = 4478.714221 C = 5529.614813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.045 4.045 4 C -0.147 4.147 5 C -0.228 4.228 6 S 0.207 5.793 7 C -0.286 4.286 8 C 0.563 3.437 9 O -0.507 6.507 10 N -0.606 5.606 11 C 0.094 3.906 12 C -0.125 4.125 13 C -0.112 4.112 14 C -0.119 4.119 15 C 0.145 3.855 16 H 0.070 0.930 17 C 0.148 3.852 18 N -0.733 5.733 19 C -0.188 4.188 20 H 0.045 0.955 21 C -0.077 4.077 22 N -0.994 5.994 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.269 1.269 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.167 0.833 33 H 0.201 0.799 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.013 0.987 43 H 0.054 0.946 44 H 0.355 0.645 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.135 17.290 -14.578 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.117 4.117 3 C -0.060 4.060 4 C -0.178 4.178 5 C -0.365 4.365 6 S 0.475 5.525 7 C -0.406 4.406 8 C 0.349 3.651 9 O -0.382 6.382 10 N -0.342 5.342 11 C -0.028 4.028 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.158 4.158 15 C 0.042 3.958 16 H 0.088 0.912 17 C 0.023 3.977 18 N -0.376 5.376 19 C -0.320 4.320 20 H 0.063 0.937 21 C -0.267 4.267 22 N -0.648 5.648 23 Si 0.784 3.216 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.195 1.195 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.184 0.816 33 H 0.218 0.782 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.187 0.813 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.474 17.858 -13.533 28.415 hybrid contribution 0.965 -1.045 -0.631 1.556 sum -16.509 16.813 -14.165 27.493 Atomic orbital electron populations 1.21589 0.93019 1.02264 1.01788 1.20369 0.97422 0.91128 1.02823 1.19625 0.98062 0.97039 0.91242 1.20044 1.03672 0.94451 0.99647 1.25604 1.07390 1.01786 1.01682 1.82986 1.60695 1.09181 0.99589 1.24573 1.17320 1.01349 0.97354 1.17553 0.79153 0.84496 0.83888 1.91109 1.50360 1.23487 1.73260 1.47981 1.48710 1.26818 1.10671 1.22252 0.94062 0.85740 1.00748 1.21954 0.93960 1.03468 0.96902 1.21512 1.01574 0.95956 0.95936 1.21864 0.91853 0.99556 1.02525 1.21489 0.97309 0.95791 0.81237 0.91196 1.21273 0.82708 0.96016 0.97749 1.42481 1.03512 1.03537 1.88081 1.18885 0.89264 0.87488 1.36322 0.93736 1.25361 0.96415 1.00495 1.04401 1.69893 1.04161 1.29719 1.61002 0.85381 0.77157 0.81003 0.78052 1.19941 1.22473 1.19463 0.91645 0.94441 0.90630 0.89134 0.93376 0.81578 0.78238 0.90271 0.89254 0.92177 0.87917 0.89543 0.90919 0.92139 0.89745 0.96951 0.92862 0.81279 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.89 71.98 0.71 -2.23 16 2 C -0.08 -2.21 5.94 29.85 0.18 -2.03 16 3 C -0.04 -1.26 5.16 -20.42 -0.11 -1.37 16 4 C -0.15 -3.09 9.96 21.09 0.21 -2.88 16 5 C -0.23 -4.17 10.92 66.81 0.73 -3.45 16 6 S 0.21 4.80 20.89 -56.49 -1.18 3.62 16 7 C -0.29 -8.98 5.02 24.07 0.12 -8.86 16 8 C 0.56 21.28 6.95 86.42 0.60 21.88 16 9 O -0.51 -24.87 9.85 -4.37 -0.04 -24.92 16 10 N -0.61 -18.54 2.97 -799.00 -2.37 -20.91 16 11 C 0.09 1.94 5.84 86.51 0.51 2.45 16 12 C -0.12 -1.91 6.10 30.82 0.19 -1.72 16 13 C -0.11 -1.77 5.88 30.62 0.18 -1.59 16 14 C -0.12 -2.75 5.30 30.67 0.16 -2.59 16 15 C 0.14 4.63 2.92 44.97 0.13 4.76 16 16 H 0.07 2.21 8.05 -2.39 -0.02 2.19 16 17 C 0.15 6.52 4.94 86.38 0.43 6.94 16 18 N -0.73 -38.98 3.73 -343.45 -1.28 -40.26 16 19 C -0.19 -12.05 10.05 84.03 0.84 -11.20 16 20 H 0.04 3.16 8.06 -2.91 -0.02 3.14 16 21 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 22 N -0.99 -69.60 13.97 21.65 0.30 -69.30 16 23 Si 0.96 51.09 27.74 68.60 1.90 52.99 16 24 H -0.27 -13.84 7.11 99.48 0.71 -13.14 16 25 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 26 H -0.27 -13.57 6.52 99.48 0.65 -12.92 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.94 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 31 H 0.05 1.81 6.73 -2.39 -0.02 1.79 16 32 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.76 5.03 -2.42 -0.01 1.75 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.01 0.56 8.02 -2.38 -0.02 0.54 16 43 H 0.05 2.64 5.54 -34.38 -0.19 2.45 16 44 H 0.36 18.39 5.47 -92.71 -0.51 17.88 16 45 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 Total: -1.00 -84.55 361.12 2.93 -81.62 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.24 Total: 23.63 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.35 Total: -6.48 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -3.35 Total: -130.48 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.90 Total: 52.99 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.18 Total: 3.62 kcal Total: -84.55 2.93 -81.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281892883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.376 kcal (2) G-P(sol) polarization free energy of solvation -84.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds