Wall clock time and date at job start Sat Apr 11 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47422 * 2 1 4 4 C 1.53008 * 109.47343 * 120.00399 * 2 1 3 5 5 H 1.08999 * 109.47058 * 184.99597 * 4 2 1 6 6 C 1.52999 * 109.46675 * 65.00043 * 4 2 1 7 7 N 1.46510 * 109.46482 * 185.00168 * 6 4 2 8 8 C 1.34776 * 119.99685 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00138 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00053 * 180.02562 * 8 7 6 11 11 S 1.80993 * 109.47548 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00262 * 179.97438 * 11 10 8 13 13 H 1.07991 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.38793 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47014 * 59.99689 * 16 14 12 18 18 H 1.48494 * 109.47368 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46798 * 299.99836 * 16 14 12 20 20 N 1.46499 * 109.47014 * 304.99929 * 4 2 1 21 21 C 1.39671 * 119.99620 * 275.27877 * 20 4 2 22 22 C 1.38912 * 120.08022 * 359.44118 * 21 20 4 23 23 C 1.38098 * 119.92495 * 179.77180 * 22 21 20 24 24 C 1.38285 * 120.08000 * 0.51307 * 23 22 21 25 25 C 1.38293 * 120.14390 * 359.74118 * 24 23 22 26 26 C 1.38103 * 120.07544 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.46900 * 299.99627 * 1 2 3 28 28 H 1.09000 * 109.47044 * 59.99995 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47218 * 239.99929 * 2 1 3 31 31 H 1.09001 * 109.46778 * 60.00299 * 3 2 1 32 32 H 1.08998 * 109.47035 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47136 * 300.00753 * 3 2 1 34 34 H 1.08998 * 109.47318 * 304.99262 * 6 4 2 35 35 H 1.08988 * 109.47710 * 65.00512 * 6 4 2 36 36 H 0.97003 * 120.00089 * 359.97438 * 7 6 4 37 37 H 1.09005 * 109.46850 * 300.00165 * 10 8 7 38 38 H 1.09002 * 109.47363 * 59.99949 * 10 8 7 39 39 H 0.96997 * 120.00031 * 180.02562 * 15 14 12 40 40 H 0.97001 * 119.99790 * 94.99446 * 20 4 2 41 41 H 1.08005 * 120.03088 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.96252 * 180.25688 * 23 22 21 43 43 H 1.07996 * 119.92928 * 179.71963 * 24 23 22 44 44 H 1.08001 * 119.95790 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.03416 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 6 1.6353 -2.1956 1.1878 7 7 2.0185 -2.8595 2.4363 8 6 1.7588 -4.1707 2.6094 9 8 1.2075 -4.8008 1.7319 10 6 2.1524 -4.8536 3.8938 11 16 1.6738 -6.5975 3.8213 12 6 2.2365 -7.1354 5.4020 13 1 2.7131 -6.4356 6.0723 14 6 2.0672 -8.4585 5.7856 15 7 1.4857 -9.3114 4.9688 16 14 2.6631 -9.0285 7.4618 17 1 1.9692 -8.2557 8.5230 18 1 2.3665 -10.4741 7.6273 19 1 4.1280 -8.8091 7.5672 20 7 1.4559 -0.1038 2.4424 21 6 2.0527 1.0255 3.0074 22 6 3.2067 1.5576 2.4462 23 6 3.7914 2.6771 3.0047 24 6 3.2356 3.2622 4.1276 25 6 2.0898 2.7320 4.6920 26 6 1.4972 1.6154 4.1357 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 0.5563 -2.2708 1.0527 35 1 2.1408 -2.6766 0.3506 36 1 2.4590 -2.3555 3.1383 37 1 3.2314 -4.7786 4.0293 38 1 1.6468 -4.3722 4.7310 39 1 1.3671 -10.2359 5.2371 40 1 0.6524 -0.4768 2.8376 41 1 3.6436 1.0986 1.5716 42 1 4.6863 3.0937 2.5663 43 1 3.6975 4.1349 4.5650 44 1 1.6585 3.1911 5.5692 45 1 0.6027 1.2016 4.5773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347601117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:38 Heat of formation + Delta-G solvation = -14.344766 kcal Electronic energy + Delta-G solvation = -24402.071633 eV Core-core repulsion = 20931.400786 eV Total energy + Delta-G solvation = -3470.670847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36235 -39.10027 -37.65223 -34.21740 -33.72584 -32.43619 -31.12372 -30.54687 -29.05520 -27.45185 -27.22407 -25.48674 -23.47510 -22.67410 -22.12345 -20.45634 -19.55394 -18.00097 -17.77531 -16.72159 -16.42607 -16.02872 -15.79526 -15.28643 -14.99707 -14.80974 -14.58781 -14.22226 -14.01070 -13.85922 -13.54295 -13.30693 -13.22188 -12.88962 -12.79582 -12.56166 -12.26628 -12.03532 -11.79242 -11.71408 -11.48714 -11.33713 -11.05513 -11.04324 -10.99778 -10.78853 -10.72453 -10.26160 -9.83323 -9.43971 -9.07267 -9.04485 -8.93314 -8.25553 -7.58382 -6.51200 -6.22336 -3.93172 1.27535 1.44917 2.96112 3.05230 3.16198 3.23200 3.27354 3.31346 3.68282 3.74727 4.19898 4.31733 4.55516 4.56347 4.75571 4.82620 4.88453 5.03907 5.07388 5.12764 5.14849 5.26284 5.30184 5.35096 5.40640 5.46457 5.53387 5.60297 5.66157 5.67722 5.77462 5.79972 5.84557 5.87444 6.02041 6.05433 6.12712 6.14658 6.33094 6.48172 6.54591 6.67010 7.13568 7.48497 7.58623 7.66376 8.34373 8.57303 9.22914 10.85044 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.002612 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.290340 B =10717.877748 C =12069.992437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.152 4.152 4 C 0.146 3.854 5 H 0.086 0.914 6 C 0.112 3.888 7 N -0.737 5.737 8 C 0.532 3.468 9 O -0.517 6.517 10 C -0.153 4.153 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 N -0.738 5.738 21 C 0.220 3.780 22 C -0.198 4.198 23 C -0.078 4.078 24 C -0.182 4.182 25 C -0.075 4.075 26 C -0.197 4.197 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.402 0.598 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 26.651 -6.598 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.208 4.208 4 C 0.040 3.960 5 H 0.104 0.896 6 C -0.013 4.013 7 N -0.393 5.393 8 C 0.318 3.682 9 O -0.392 6.392 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 N -0.367 5.367 21 C 0.117 3.883 22 C -0.220 4.220 23 C -0.097 4.097 24 C -0.202 4.202 25 C -0.093 4.093 26 C -0.219 4.219 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.237 0.763 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.258 25.311 -8.275 26.659 hybrid contribution 0.915 0.489 2.558 2.760 sum 2.172 25.799 -5.717 26.515 Atomic orbital electron populations 1.21847 0.94675 1.02086 1.01944 1.21553 0.96920 0.96887 0.97495 1.22216 1.00595 0.95692 1.02344 1.21240 0.98530 0.90924 0.85338 0.89634 1.21612 1.01439 0.90144 0.88091 1.45976 1.63921 1.10339 1.19030 1.20319 0.77985 0.81042 0.88871 1.90708 1.40649 1.64180 1.43631 1.23525 1.04616 1.05307 0.96935 1.85376 1.78560 0.95614 1.23740 1.22827 1.45551 0.97945 1.02134 0.90985 1.24990 0.94835 0.95532 0.98192 1.70006 1.40179 1.04383 1.35759 0.86223 0.79215 0.77676 0.82392 1.19926 1.20797 1.19924 1.44746 1.31468 1.29966 1.30561 1.17783 0.91913 0.86943 0.91662 1.20946 0.97564 1.00051 1.03445 1.20874 0.98614 0.94963 0.95243 1.20879 0.98437 1.02291 0.98637 1.20858 0.95067 0.94880 0.98539 1.20606 1.03097 0.99855 0.98389 0.92341 0.92753 0.92253 0.90248 0.91293 0.92468 0.93086 0.90762 0.90288 0.76570 0.89276 0.89290 0.92116 0.76258 0.85473 0.86539 0.86818 0.86477 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.74 37.16 0.32 -0.78 16 2 C -0.11 -0.76 2.74 -90.62 -0.25 -1.01 16 3 C -0.15 -1.04 7.50 37.16 0.28 -0.76 16 4 C 0.15 1.12 2.07 -67.93 -0.14 0.98 16 5 H 0.09 0.66 6.48 -51.93 -0.34 0.32 16 6 C 0.11 1.16 5.10 -4.04 -0.02 1.14 16 7 N -0.74 -9.32 5.39 -60.29 -0.32 -9.65 16 8 C 0.53 9.67 7.85 -10.99 -0.09 9.58 16 9 O -0.52 -11.48 15.86 5.55 0.09 -11.39 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 16 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 20 N -0.74 -5.72 3.65 -52.16 -0.19 -5.91 16 21 C 0.22 1.90 5.47 -83.79 -0.46 1.44 16 22 C -0.20 -1.65 6.71 -39.38 -0.26 -1.91 16 23 C -0.08 -0.64 10.04 -39.62 -0.40 -1.04 16 24 C -0.18 -1.52 10.04 -39.54 -0.40 -1.92 16 25 C -0.07 -0.64 10.04 -39.61 -0.40 -1.03 16 26 C -0.20 -1.74 9.90 -39.38 -0.39 -2.13 16 27 H 0.06 0.46 7.47 -51.93 -0.39 0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 6.46 -51.93 -0.34 0.14 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.56 5.38 -51.93 -0.28 0.28 16 32 H 0.06 0.36 6.36 -51.93 -0.33 0.03 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.83 6.34 -51.93 -0.33 0.50 16 35 H 0.08 0.88 8.14 -51.94 -0.42 0.45 16 36 H 0.40 4.31 8.14 -40.82 -0.33 3.98 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.40 3.17 8.62 -40.82 -0.35 2.82 16 41 H 0.13 0.95 4.04 -52.48 -0.21 0.74 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 43 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -33.35 373.40 -9.75 -43.10 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.67 Total: 4.38 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -1.78 Total: -13.28 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.22 Total: -41.02 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.35 -9.75 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347601117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.754 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds