Wall clock time and date at job start Sat Apr 11 2020 00:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47422 * 2 1 4 4 C 1.53008 * 109.47343 * 120.00399 * 2 1 3 5 5 H 1.08999 * 109.47058 * 184.99597 * 4 2 1 6 6 C 1.52999 * 109.46675 * 65.00043 * 4 2 1 7 7 N 1.46510 * 109.46482 * 185.00168 * 6 4 2 8 8 C 1.34776 * 119.99685 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00138 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00053 * 180.02562 * 8 7 6 11 11 S 1.80993 * 109.47548 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00262 * 179.97438 * 11 10 8 13 13 H 1.07991 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.38793 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47014 * 59.99689 * 16 14 12 18 18 H 1.48494 * 109.47368 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46798 * 299.99836 * 16 14 12 20 20 N 1.46499 * 109.47014 * 304.99929 * 4 2 1 21 21 C 1.39671 * 119.99620 * 275.27877 * 20 4 2 22 22 C 1.38912 * 120.08022 * 359.44118 * 21 20 4 23 23 C 1.38098 * 119.92495 * 179.77180 * 22 21 20 24 24 C 1.38285 * 120.08000 * 0.51307 * 23 22 21 25 25 C 1.38293 * 120.14390 * 359.74118 * 24 23 22 26 26 C 1.38103 * 120.07544 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.46900 * 299.99627 * 1 2 3 28 28 H 1.09000 * 109.47044 * 59.99995 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47218 * 239.99929 * 2 1 3 31 31 H 1.09001 * 109.46778 * 60.00299 * 3 2 1 32 32 H 1.08998 * 109.47035 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47136 * 300.00753 * 3 2 1 34 34 H 1.08998 * 109.47318 * 304.99262 * 6 4 2 35 35 H 1.08988 * 109.47710 * 65.00512 * 6 4 2 36 36 H 0.97003 * 120.00089 * 359.97438 * 7 6 4 37 37 H 1.09005 * 109.46850 * 300.00165 * 10 8 7 38 38 H 1.09002 * 109.47363 * 59.99949 * 10 8 7 39 39 H 0.96997 * 120.00031 * 180.02562 * 15 14 12 40 40 H 0.97001 * 119.99790 * 94.99446 * 20 4 2 41 41 H 1.08005 * 120.03088 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.96252 * 180.25688 * 23 22 21 43 43 H 1.07996 * 119.92928 * 179.71963 * 24 23 22 44 44 H 1.08001 * 119.95790 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.03416 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 6 1.6353 -2.1956 1.1878 7 7 2.0185 -2.8595 2.4363 8 6 1.7588 -4.1707 2.6094 9 8 1.2075 -4.8008 1.7319 10 6 2.1524 -4.8536 3.8938 11 16 1.6738 -6.5975 3.8213 12 6 2.2365 -7.1354 5.4020 13 1 2.7131 -6.4356 6.0723 14 6 2.0672 -8.4585 5.7856 15 7 1.4857 -9.3114 4.9688 16 14 2.6631 -9.0285 7.4618 17 1 1.9692 -8.2557 8.5230 18 1 2.3665 -10.4741 7.6273 19 1 4.1280 -8.8091 7.5672 20 7 1.4559 -0.1038 2.4424 21 6 2.0527 1.0255 3.0074 22 6 3.2067 1.5576 2.4462 23 6 3.7914 2.6771 3.0047 24 6 3.2356 3.2622 4.1276 25 6 2.0898 2.7320 4.6920 26 6 1.4972 1.6154 4.1357 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 0.5563 -2.2708 1.0527 35 1 2.1408 -2.6766 0.3506 36 1 2.4590 -2.3555 3.1383 37 1 3.2314 -4.7786 4.0293 38 1 1.6468 -4.3722 4.7310 39 1 1.3671 -10.2359 5.2371 40 1 0.6524 -0.4768 2.8376 41 1 3.6436 1.0986 1.5716 42 1 4.6863 3.0937 2.5663 43 1 3.6975 4.1349 4.5650 44 1 1.6585 3.1911 5.5692 45 1 0.6027 1.2016 4.5773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347601117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:37 Heat of formation + Delta-G solvation = -35.208637 kcal Electronic energy + Delta-G solvation = -24402.976358 eV Core-core repulsion = 20931.400786 eV Total energy + Delta-G solvation = -3471.575573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15698 -40.30404 -38.41797 -35.38054 -34.59163 -34.35065 -31.83891 -31.62028 -30.10347 -28.16566 -28.02970 -27.60320 -24.27922 -23.33249 -22.75313 -21.75747 -20.32339 -19.77777 -18.52698 -17.88114 -17.56272 -16.88924 -16.88538 -16.76108 -16.31913 -16.01584 -15.68767 -15.23200 -14.96789 -14.79450 -14.57900 -14.41463 -14.08214 -14.01645 -13.76773 -13.63472 -13.17930 -13.17740 -12.87158 -12.87059 -12.67522 -12.60776 -12.35098 -12.09893 -11.93990 -11.75732 -11.61005 -11.36026 -11.13751 -11.04735 -10.80933 -10.29470 -10.13344 -9.66483 -8.67436 -8.35404 -8.21339 -6.13537 0.65368 0.82281 1.25939 1.43270 1.45916 1.55819 1.59560 2.21324 2.27475 2.51419 2.98633 3.11071 3.31141 3.57661 3.88094 3.92394 4.02682 4.15366 4.20830 4.24465 4.28220 4.42188 4.47927 4.49351 4.59227 4.66939 4.73068 4.77182 4.81631 4.89481 4.99205 5.06009 5.08245 5.21790 5.25658 5.37959 5.40731 5.42565 5.49189 5.53325 5.72469 5.86840 6.05780 6.18760 6.45177 6.50758 6.83581 7.05857 7.21150 8.73539 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.002612 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.290340 B =10717.877748 C =12069.992437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.146 4.146 4 C 0.159 3.841 5 H 0.094 0.906 6 C 0.112 3.888 7 N -0.710 5.710 8 C 0.535 3.465 9 O -0.563 6.563 10 C -0.130 4.130 11 S -0.148 6.148 12 C -0.548 4.548 13 H 0.082 0.918 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.735 5.735 21 C 0.214 3.786 22 C -0.203 4.203 23 C -0.086 4.086 24 C -0.193 4.193 25 C -0.085 4.085 26 C -0.211 4.211 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.401 0.599 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 28.563 -5.687 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.203 4.203 4 C 0.053 3.947 5 H 0.112 0.888 6 C -0.012 4.012 7 N -0.364 5.364 8 C 0.321 3.679 9 O -0.441 6.441 10 C -0.282 4.282 11 S 0.080 5.920 12 C -0.696 4.696 13 H 0.100 0.900 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.187 1.187 20 N -0.365 5.365 21 C 0.111 3.889 22 C -0.225 4.225 23 C -0.104 4.104 24 C -0.213 4.213 25 C -0.104 4.104 26 C -0.234 4.234 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.250 0.750 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.237 0.763 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.610 27.291 -7.358 28.386 hybrid contribution 0.496 0.055 2.214 2.269 sum 3.107 27.346 -5.145 27.998 Atomic orbital electron populations 1.21819 0.95069 1.01509 1.01949 1.21533 0.96515 0.97128 0.97282 1.22150 1.01062 0.95111 1.01957 1.21129 0.98911 0.88912 0.85792 0.88770 1.21757 1.01194 0.91589 0.86637 1.45697 1.62147 1.08394 1.20126 1.19998 0.77827 0.82468 0.87647 1.90699 1.43071 1.65599 1.44765 1.23369 1.05703 1.00226 0.98878 1.85530 1.79619 1.02256 1.24645 1.23171 1.45564 0.98636 1.02252 0.90037 1.26118 0.94711 0.95572 1.02676 1.70171 1.41589 1.04811 1.38159 0.85017 0.79084 0.77222 0.76768 1.18681 1.20333 1.18678 1.44691 1.31405 1.29907 1.30519 1.17854 0.92158 0.87111 0.91747 1.21098 0.97467 1.00201 1.03725 1.21147 0.99166 0.94898 0.95201 1.21136 0.98479 1.02800 0.98840 1.21096 0.95316 0.94928 0.99069 1.20768 1.03512 1.00303 0.98809 0.92798 0.92320 0.93080 0.89499 0.92375 0.91638 0.92750 0.91268 0.90462 0.75006 0.87516 0.87485 0.91956 0.76334 0.84594 0.84901 0.85538 0.85316 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.74 71.98 0.63 -1.38 16 2 C -0.10 -1.27 2.74 -10.79 -0.03 -1.30 16 3 C -0.15 -1.69 7.50 71.98 0.54 -1.15 16 4 C 0.16 2.13 2.07 44.99 0.09 2.22 16 5 H 0.09 1.18 6.48 -2.39 -0.02 1.16 16 6 C 0.11 2.18 5.10 86.38 0.44 2.62 16 7 N -0.71 -16.78 5.39 -463.05 -2.49 -19.28 16 8 C 0.53 19.12 7.85 87.66 0.69 19.81 16 9 O -0.56 -25.33 15.86 -3.05 -0.05 -25.38 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 11 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 12 C -0.55 -31.36 9.50 67.95 0.65 -30.72 16 13 H 0.08 4.33 7.80 -2.92 -0.02 4.31 16 14 C 0.01 0.80 5.49 84.86 0.47 1.27 16 15 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 16 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 N -0.74 -10.18 3.65 -318.95 -1.16 -11.34 16 21 C 0.21 3.34 5.47 38.22 0.21 3.55 16 22 C -0.20 -2.95 6.71 22.40 0.15 -2.80 16 23 C -0.09 -1.22 10.04 22.25 0.22 -1.00 16 24 C -0.19 -2.88 10.04 22.29 0.22 -2.66 16 25 C -0.09 -1.34 10.04 22.25 0.22 -1.12 16 26 C -0.21 -3.48 9.90 22.40 0.22 -3.26 16 27 H 0.05 0.79 7.47 -2.39 -0.02 0.77 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.78 6.46 -2.39 -0.02 0.77 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.83 5.38 -2.39 -0.01 0.82 16 32 H 0.06 0.66 6.36 -2.39 -0.02 0.64 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 1.49 6.34 -2.39 -0.02 1.47 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.41 7.88 8.14 -92.71 -0.75 7.12 16 37 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.40 5.77 8.62 -92.71 -0.80 4.98 16 41 H 0.14 1.67 4.04 -2.91 -0.01 1.66 16 42 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -73.47 373.40 2.07 -71.40 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.54 Total: 24.62 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.16 Total: -20.61 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -3.37 Total: -86.31 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -73.47 2.07 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347601117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.195 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds