Wall clock time and date at job start Sat Apr 11 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47216 * 2 1 4 4 C 1.53002 * 109.46809 * 239.99850 * 2 1 3 5 5 C 1.52997 * 109.47047 * 120.00091 * 2 1 3 6 6 N 1.46497 * 109.47341 * 61.98975 * 5 2 1 7 7 C 1.46493 * 120.00558 * 263.72589 * 6 5 2 8 8 C 1.50707 * 109.47002 * 269.99892 * 7 6 5 9 9 H 1.08000 * 120.00151 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99874 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00007 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00010 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47143 * 89.99287 * 12 10 8 14 14 H 1.48495 * 109.47068 * 209.99619 * 12 10 8 15 15 H 1.48506 * 109.46841 * 329.99629 * 12 10 8 16 16 C 1.34777 * 119.99756 * 83.72246 * 6 5 2 17 17 O 1.21623 * 120.00503 * 174.02998 * 16 6 5 18 18 C 1.47257 * 119.99959 * 354.30744 * 16 6 5 19 19 N 1.30557 * 125.54458 * 212.68941 * 18 16 6 20 20 C 1.30705 * 115.90719 * 179.78294 * 19 18 16 21 21 C 1.50705 * 122.10608 * 180.22032 * 20 19 18 22 22 C 1.52999 * 117.49613 * 163.93453 * 21 20 19 23 23 C 1.52998 * 117.49790 * 95.31139 * 21 20 19 24 24 C 1.34230 * 115.78314 * 0.51409 * 20 19 18 25 25 S 1.71066 * 109.09088 * 359.72791 * 24 20 19 26 26 H 1.09003 * 109.47250 * 300.00036 * 1 2 3 27 27 H 1.09004 * 109.47063 * 59.99692 * 1 2 3 28 28 H 1.08992 * 109.47481 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47032 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46850 * 300.00185 * 3 2 1 31 31 H 1.09003 * 109.47040 * 59.99835 * 3 2 1 32 32 H 1.08992 * 109.46910 * 296.74034 * 4 2 1 33 33 H 1.08996 * 109.46787 * 56.74230 * 4 2 1 34 34 H 1.09007 * 109.46570 * 176.73669 * 4 2 1 35 35 H 1.09005 * 109.47075 * 301.99083 * 5 2 1 36 36 H 1.08994 * 109.47255 * 181.99644 * 5 2 1 37 37 H 1.09002 * 109.47382 * 29.99542 * 7 6 5 38 38 H 1.09002 * 109.47806 * 149.99733 * 7 6 5 39 39 H 0.97001 * 120.00129 * 180.02562 * 11 10 8 40 40 H 1.09002 * 115.54946 * 309.64409 * 21 20 19 41 41 H 1.09003 * 117.50092 * 359.97438 * 22 21 20 42 42 H 1.09005 * 117.49965 * 145.02016 * 22 21 20 43 43 H 1.09002 * 117.50091 * 214.97449 * 23 21 20 44 44 H 1.09002 * 117.50450 * 359.97438 * 23 21 20 45 45 H 1.08001 * 125.45309 * 179.72677 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.5913 -2.1156 1.2255 7 6 0.3813 -2.5082 1.9520 8 6 0.7479 -2.9141 3.3563 9 1 1.7792 -2.8831 3.6755 10 6 -0.2331 -3.3260 4.2332 11 7 -1.4888 -3.3642 3.8443 12 14 0.2213 -3.8283 5.9741 13 1 0.1682 -2.6394 6.8622 14 1 -0.7380 -4.8524 6.4600 15 1 1.5949 -4.3926 5.9838 16 6 2.2917 -3.0372 0.5352 17 8 1.9832 -4.2118 0.6029 18 6 3.4342 -2.6229 -0.2963 19 7 3.8079 -3.1916 -1.4105 20 6 4.8494 -2.6652 -1.9991 21 6 5.3967 -3.2075 -3.2943 22 6 6.3576 -2.3160 -4.0834 23 6 4.9321 -2.5421 -4.5912 24 6 5.4044 -1.6149 -1.3741 25 16 4.5235 -1.2844 0.0546 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.7251 -1.7644 -1.2205 33 1 1.6297 -0.2423 -2.1382 34 1 3.1285 -0.6709 -1.2790 35 1 1.6478 -0.2284 2.1389 36 1 3.1294 -0.6904 1.2673 37 1 -0.3112 -1.6671 1.9860 38 1 -0.0919 -3.3479 1.4429 39 1 -2.1791 -3.6537 4.4613 40 1 5.5745 -4.2827 -3.3159 41 1 6.5935 -1.3371 -3.6661 42 1 7.1680 -2.8046 -4.6245 43 1 4.8047 -3.1794 -5.4663 44 1 4.2302 -1.7123 -4.5079 45 1 6.2688 -1.0663 -1.7182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348792559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:43 Heat of formation + Delta-G solvation = 52.666556 kcal Electronic energy + Delta-G solvation = -26289.585972 eV Core-core repulsion = 22821.820954 eV Total energy + Delta-G solvation = -3467.765018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54606 -39.29095 -37.14493 -36.63286 -34.03300 -32.47723 -30.40997 -28.27140 -27.45316 -27.00050 -26.18885 -25.48999 -23.96288 -22.55284 -22.04410 -19.71971 -19.33131 -18.77643 -17.66317 -16.65670 -16.53448 -16.03451 -15.66729 -15.43745 -14.87588 -14.51127 -14.27394 -14.16820 -13.71949 -13.34798 -13.21427 -12.88043 -12.67127 -12.39440 -12.18283 -12.00631 -11.76823 -11.69323 -11.51587 -11.43378 -11.10742 -11.03063 -10.86306 -10.71832 -10.69220 -10.53024 -10.44912 -10.33487 -10.19619 -9.86299 -9.66625 -9.24846 -9.16558 -8.47050 -8.27747 -7.79353 -6.08267 -4.13171 0.49574 1.27191 1.74652 2.58018 3.28448 3.28979 3.36328 3.41078 3.57964 3.77256 4.27745 4.42754 4.66497 4.73316 4.79927 4.90372 4.90955 5.04780 5.14775 5.22243 5.27397 5.40171 5.42318 5.46922 5.61575 5.64509 5.66548 5.83131 5.88960 5.90172 5.97713 5.99191 6.04970 6.09138 6.15801 6.22043 6.32087 6.48443 6.63327 6.90999 7.29688 7.38592 7.74547 7.87537 8.14196 8.17995 8.71750 8.92127 9.51881 10.99715 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.004190 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.282878 B = 6680.768242 C = 7363.114036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.167 4.167 5 C 0.124 3.876 6 N -0.582 5.582 7 C 0.249 3.751 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.064 3.936 11 N -0.893 5.893 12 Si 0.898 3.102 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.582 3.418 17 O -0.496 6.496 18 C 0.036 3.964 19 N -0.410 5.410 20 C 0.090 3.910 21 C -0.082 4.082 22 C -0.172 4.172 23 C -0.164 4.164 24 C -0.308 4.308 25 S 0.191 5.809 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 10.817 -12.735 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.225 4.225 5 C -0.002 4.002 6 N -0.314 5.314 7 C 0.131 3.869 8 C -0.569 4.569 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.363 3.637 17 O -0.369 6.369 18 C -0.243 4.243 19 N -0.125 5.125 20 C -0.047 4.047 21 C -0.103 4.103 22 C -0.210 4.210 23 C -0.201 4.201 24 C -0.447 4.447 25 S 0.449 5.551 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.161 10.389 -11.959 19.971 hybrid contribution 0.713 -0.562 0.110 0.915 sum 12.874 9.826 -11.849 20.067 Atomic orbital electron populations 1.21884 0.93431 1.03042 1.01311 1.20980 0.97137 0.95352 0.95213 1.21820 1.00739 0.94908 1.02044 1.22881 1.01111 1.01231 0.97245 1.21799 0.96170 0.83200 0.99017 1.48076 1.28310 1.06393 1.48605 1.19482 0.79588 0.97019 0.90792 1.21420 0.94120 1.45203 0.96155 0.92292 1.24905 0.94810 0.95236 0.98912 1.69921 0.99927 1.47359 1.35935 0.86498 0.78492 0.78351 0.84125 1.20605 1.21061 1.19832 1.16750 0.81014 0.86194 0.79781 1.90848 1.66741 1.16485 1.62851 1.27886 1.02009 0.96799 0.97567 1.66396 1.12721 1.27140 1.06263 1.19244 0.93173 0.94388 0.97894 1.20365 1.03422 0.98662 0.87820 1.23024 0.93559 1.01027 1.03343 1.22971 0.97234 1.03198 0.96718 1.26768 1.08598 1.05260 1.04105 1.84154 1.19449 1.30312 1.21192 0.92174 0.93193 0.91499 0.92697 0.92495 0.92150 0.91488 0.92814 0.92502 0.88022 0.92825 0.93753 0.93694 0.92627 0.86253 0.88633 0.88177 0.88257 0.88661 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.50 37.16 0.28 -1.74 16 2 C -0.09 -1.17 0.75 -154.50 -0.12 -1.28 16 3 C -0.14 -1.45 8.47 37.16 0.31 -1.13 16 4 C -0.17 -2.39 6.52 37.16 0.24 -2.15 16 5 C 0.12 1.98 4.44 -4.05 -0.02 1.96 16 6 N -0.58 -12.08 1.98 -176.40 -0.35 -12.43 16 7 C 0.25 6.21 4.12 -5.19 -0.02 6.19 16 8 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 12 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.58 12.84 6.34 -12.59 -0.08 12.76 16 17 O -0.50 -13.20 16.75 5.26 0.09 -13.12 16 18 C 0.04 0.65 3.91 -14.43 -0.06 0.59 16 19 N -0.41 -7.37 10.49 -7.69 -0.08 -7.45 16 20 C 0.09 1.29 6.18 -84.48 -0.52 0.76 16 21 C -0.08 -0.94 6.28 -91.77 -0.58 -1.52 16 22 C -0.17 -1.43 9.89 -26.73 -0.26 -1.69 16 23 C -0.16 -1.56 10.23 -26.73 -0.27 -1.84 16 24 C -0.31 -3.73 9.76 29.32 0.29 -3.44 16 25 S 0.19 2.54 16.38 -107.50 -1.76 0.78 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.16 6.41 -51.93 -0.33 0.82 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.18 5.07 -51.93 -0.26 0.91 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 3.48 -25.70 -0.09 0.68 16 35 H 0.10 1.61 8.02 -51.93 -0.42 1.20 16 36 H 0.05 0.79 3.85 -22.31 -0.09 0.70 16 37 H 0.04 1.09 6.76 -51.93 -0.35 0.74 16 38 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.10 0.72 6.72 -51.93 -0.35 0.37 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.17 1.57 6.85 -52.49 -0.36 1.21 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -32.09 361.24 -8.58 -40.67 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.41 Total: 0.41 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.23 Total: -5.74 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.31 Total: -44.91 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.76 Total: 0.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.09 -8.58 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348792559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.341 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds