Wall clock time and date at job start Sat Apr 11 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47216 * 2 1 4 4 C 1.53002 * 109.46809 * 239.99850 * 2 1 3 5 5 C 1.52997 * 109.47047 * 120.00091 * 2 1 3 6 6 N 1.46497 * 109.47341 * 61.98975 * 5 2 1 7 7 C 1.46493 * 120.00558 * 263.72589 * 6 5 2 8 8 C 1.50707 * 109.47002 * 269.99892 * 7 6 5 9 9 H 1.08000 * 120.00151 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99874 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00007 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00010 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47143 * 89.99287 * 12 10 8 14 14 H 1.48495 * 109.47068 * 209.99619 * 12 10 8 15 15 H 1.48506 * 109.46841 * 329.99629 * 12 10 8 16 16 C 1.34777 * 119.99756 * 83.72246 * 6 5 2 17 17 O 1.21623 * 120.00503 * 174.02998 * 16 6 5 18 18 C 1.47257 * 119.99959 * 354.30744 * 16 6 5 19 19 N 1.30557 * 125.54458 * 212.68941 * 18 16 6 20 20 C 1.30705 * 115.90719 * 179.78294 * 19 18 16 21 21 C 1.50705 * 122.10608 * 180.22032 * 20 19 18 22 22 C 1.52999 * 117.49613 * 163.93453 * 21 20 19 23 23 C 1.52998 * 117.49790 * 95.31139 * 21 20 19 24 24 C 1.34230 * 115.78314 * 0.51409 * 20 19 18 25 25 S 1.71066 * 109.09088 * 359.72791 * 24 20 19 26 26 H 1.09003 * 109.47250 * 300.00036 * 1 2 3 27 27 H 1.09004 * 109.47063 * 59.99692 * 1 2 3 28 28 H 1.08992 * 109.47481 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47032 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46850 * 300.00185 * 3 2 1 31 31 H 1.09003 * 109.47040 * 59.99835 * 3 2 1 32 32 H 1.08992 * 109.46910 * 296.74034 * 4 2 1 33 33 H 1.08996 * 109.46787 * 56.74230 * 4 2 1 34 34 H 1.09007 * 109.46570 * 176.73669 * 4 2 1 35 35 H 1.09005 * 109.47075 * 301.99083 * 5 2 1 36 36 H 1.08994 * 109.47255 * 181.99644 * 5 2 1 37 37 H 1.09002 * 109.47382 * 29.99542 * 7 6 5 38 38 H 1.09002 * 109.47806 * 149.99733 * 7 6 5 39 39 H 0.97001 * 120.00129 * 180.02562 * 11 10 8 40 40 H 1.09002 * 115.54946 * 309.64409 * 21 20 19 41 41 H 1.09003 * 117.50092 * 359.97438 * 22 21 20 42 42 H 1.09005 * 117.49965 * 145.02016 * 22 21 20 43 43 H 1.09002 * 117.50091 * 214.97449 * 23 21 20 44 44 H 1.09002 * 117.50450 * 359.97438 * 23 21 20 45 45 H 1.08001 * 125.45309 * 179.72677 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.5913 -2.1156 1.2255 7 6 0.3813 -2.5082 1.9520 8 6 0.7479 -2.9141 3.3563 9 1 1.7792 -2.8831 3.6755 10 6 -0.2331 -3.3260 4.2332 11 7 -1.4888 -3.3642 3.8443 12 14 0.2213 -3.8283 5.9741 13 1 0.1682 -2.6394 6.8622 14 1 -0.7380 -4.8524 6.4600 15 1 1.5949 -4.3926 5.9838 16 6 2.2917 -3.0372 0.5352 17 8 1.9832 -4.2118 0.6029 18 6 3.4342 -2.6229 -0.2963 19 7 3.8079 -3.1916 -1.4105 20 6 4.8494 -2.6652 -1.9991 21 6 5.3967 -3.2075 -3.2943 22 6 6.3576 -2.3160 -4.0834 23 6 4.9321 -2.5421 -4.5912 24 6 5.4044 -1.6149 -1.3741 25 16 4.5235 -1.2844 0.0546 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.7251 -1.7644 -1.2205 33 1 1.6297 -0.2423 -2.1382 34 1 3.1285 -0.6709 -1.2790 35 1 1.6478 -0.2284 2.1389 36 1 3.1294 -0.6904 1.2673 37 1 -0.3112 -1.6671 1.9860 38 1 -0.0919 -3.3479 1.4429 39 1 -2.1791 -3.6537 4.4613 40 1 5.5745 -4.2827 -3.3159 41 1 6.5935 -1.3371 -3.6661 42 1 7.1680 -2.8046 -4.6245 43 1 4.8047 -3.1794 -5.4663 44 1 4.2302 -1.7123 -4.5079 45 1 6.2688 -1.0663 -1.7182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348792559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:42 Heat of formation + Delta-G solvation = 32.537997 kcal Electronic energy + Delta-G solvation = -26290.458812 eV Core-core repulsion = 22821.820954 eV Total energy + Delta-G solvation = -3468.637858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86946 -40.61633 -38.58564 -37.53288 -35.79436 -34.42052 -31.69366 -29.87912 -28.78203 -28.14971 -27.39532 -26.89075 -25.48789 -23.61769 -23.18395 -21.07960 -20.44741 -19.95090 -19.00027 -18.66105 -17.90901 -17.47147 -16.92550 -16.82615 -16.36121 -15.69931 -15.55142 -15.48024 -15.02657 -14.72659 -14.52025 -14.32196 -14.09155 -13.78109 -13.54337 -13.31684 -13.04429 -12.87405 -12.83309 -12.64025 -12.59909 -12.36115 -12.26035 -12.17973 -12.04173 -11.76993 -11.66308 -11.55110 -11.45861 -11.31261 -11.26219 -10.66080 -10.61986 -10.37845 -9.66562 -9.28375 -8.22580 -6.36873 -0.71723 0.05770 0.61929 1.33820 1.37722 1.40897 1.50746 1.80384 2.12858 2.40723 2.85994 3.07302 3.19836 3.53714 3.73327 3.73853 3.95750 3.99480 4.05786 4.18099 4.25647 4.32458 4.41757 4.47887 4.59169 4.70543 4.79124 4.79655 4.87998 4.92582 4.96265 4.99249 5.06148 5.08363 5.13634 5.16889 5.18353 5.27089 5.29723 5.36384 5.48410 5.53695 5.75434 6.03251 6.38643 6.69035 6.70446 7.07881 7.34000 8.84645 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.004190 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.282878 B = 6680.768242 C = 7363.114036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.159 4.159 5 C 0.115 3.885 6 N -0.581 5.581 7 C 0.269 3.731 8 C -0.547 4.547 9 H 0.054 0.946 10 C 0.013 3.987 11 N -0.925 5.925 12 Si 0.965 3.035 13 H -0.259 1.259 14 H -0.282 1.282 15 H -0.276 1.276 16 C 0.577 3.423 17 O -0.567 6.567 18 C -0.018 4.018 19 N -0.439 5.439 20 C 0.070 3.930 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.167 4.167 24 C -0.279 4.279 25 S 0.263 5.737 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.045 0.955 38 H -0.006 1.006 39 H 0.268 0.732 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.087 14.194 -13.274 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 C -0.189 4.189 4 C -0.216 4.216 5 C -0.008 4.008 6 N -0.311 5.311 7 C 0.149 3.851 8 C -0.585 4.585 9 H 0.072 0.928 10 C -0.186 4.186 11 N -0.564 5.564 12 Si 0.789 3.211 13 H -0.184 1.184 14 H -0.208 1.208 15 H -0.201 1.201 16 C 0.362 3.638 17 O -0.446 6.446 18 C -0.293 4.293 19 N -0.155 5.155 20 C -0.067 4.067 21 C -0.133 4.133 22 C -0.177 4.177 23 C -0.205 4.205 24 C -0.419 4.419 25 S 0.520 5.480 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.012 0.988 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 15.500 13.829 -12.498 24.242 hybrid contribution -0.252 -1.579 0.161 1.607 sum 15.249 12.249 -12.337 23.125 Atomic orbital electron populations 1.21859 0.94485 1.00705 1.02466 1.20975 0.96276 0.97365 0.93471 1.21802 1.01806 0.91871 1.03448 1.22786 1.01680 0.99062 0.98105 1.22151 0.97501 0.80531 1.00636 1.47957 1.26902 1.08450 1.47798 1.18921 0.81261 0.95130 0.89803 1.21694 0.93954 1.45603 0.97290 0.92797 1.25786 0.94671 0.94994 1.03196 1.70039 1.00914 1.47980 1.37462 0.85453 0.77814 0.78575 0.79210 1.18409 1.20774 1.20052 1.17315 0.81732 0.85343 0.79455 1.90774 1.69203 1.19255 1.65381 1.26885 1.03085 1.00874 0.98480 1.66359 1.14208 1.28326 1.06630 1.19642 0.92666 0.95283 0.99071 1.20431 1.06499 0.98873 0.87525 1.23180 0.92964 1.00769 1.00798 1.23039 0.98601 1.02891 0.95933 1.27295 1.08401 1.03841 1.02313 1.83613 1.16887 1.26673 1.20789 0.91975 0.91031 0.95568 0.90961 0.90838 0.91136 0.95361 0.91445 0.91479 0.87852 0.90956 0.93707 0.98756 0.92334 0.87293 0.86913 0.86161 0.87377 0.89265 0.76442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 7.50 71.98 0.54 -3.51 16 2 C -0.08 -2.09 0.75 -52.18 -0.04 -2.13 16 3 C -0.13 -2.28 8.47 71.98 0.61 -1.67 16 4 C -0.16 -4.44 6.52 71.98 0.47 -3.97 16 5 C 0.12 3.68 4.44 86.38 0.38 4.07 16 6 N -0.58 -25.66 1.98 -830.25 -1.64 -27.31 16 7 C 0.27 14.48 4.12 85.64 0.35 14.84 16 8 C -0.55 -31.48 9.39 25.60 0.24 -31.24 16 9 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 10 C 0.01 0.75 5.46 84.66 0.46 1.21 16 11 N -0.92 -55.44 13.29 21.45 0.28 -55.16 16 12 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 C 0.58 27.43 6.34 86.61 0.55 27.98 16 17 O -0.57 -33.29 16.75 -4.10 -0.07 -33.36 16 18 C -0.02 -0.68 3.91 87.26 0.34 -0.34 16 19 N -0.44 -16.16 10.49 -178.24 -1.87 -18.03 16 20 C 0.07 1.89 6.18 41.81 0.26 2.15 16 21 C -0.11 -2.39 6.28 -11.54 -0.07 -2.46 16 22 C -0.14 -1.74 9.89 30.60 0.30 -1.43 16 23 C -0.17 -2.82 10.23 30.59 0.31 -2.51 16 24 C -0.28 -5.65 9.76 66.90 0.65 -5.00 16 25 S 0.26 6.31 16.38 -56.49 -0.93 5.38 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.03 0.96 6.41 -2.39 -0.02 0.94 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 1.03 5.07 -2.39 -0.01 1.02 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.66 3.48 -19.06 -0.07 1.60 16 35 H 0.10 3.25 8.02 -2.38 -0.02 3.23 16 36 H 0.07 2.00 3.85 -21.23 -0.08 1.92 16 37 H 0.05 2.37 6.76 -2.39 -0.02 2.35 16 38 H -0.01 -0.36 7.51 -2.39 -0.02 -0.38 16 39 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.11 1.02 6.72 -2.39 -0.02 1.00 16 42 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.22 2.46 6.85 -2.91 -0.02 2.44 16 Total: -1.00 -77.98 361.24 4.03 -73.95 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.87 Total: 11.67 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.36 Total: -4.00 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.23 Total: -100.50 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.07 Total: -33.36 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -0.93 Total: 5.38 kcal Total: -77.98 4.03 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348792559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.484 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds