Wall clock time and date at job start Sat Apr 11 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47222 * 2 1 4 4 C 1.53001 * 109.46857 * 119.99538 * 2 1 3 5 5 H 1.08994 * 109.47370 * 296.10629 * 4 2 1 6 6 N 1.46903 * 109.47066 * 56.10763 * 4 2 1 7 7 C 1.46895 * 110.99899 * 203.44290 * 6 4 2 8 8 C 1.53004 * 109.47280 * 174.82451 * 7 6 4 9 9 H 1.09000 * 109.47113 * 59.99494 * 8 7 6 10 10 O 1.42909 * 109.47103 * 300.00331 * 8 7 6 11 11 C 1.50699 * 109.47508 * 179.97438 * 8 7 6 12 12 H 1.08002 * 119.99950 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00022 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00168 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00074 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47190 * 59.99988 * 15 13 11 17 17 H 1.48492 * 109.47202 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46895 * 300.00443 * 15 13 11 19 19 C 1.50704 * 109.46987 * 176.10444 * 4 2 1 20 20 N 1.30980 * 126.43663 * 104.71427 * 19 4 2 21 21 C 1.35210 * 105.57566 * 179.89733 * 20 19 4 22 22 C 1.48442 * 126.40918 * 180.14082 * 21 20 19 23 23 N 1.33978 * 125.64770 * 359.93925 * 22 21 20 24 24 C 1.30641 * 109.78832 * 179.85905 * 23 22 21 25 25 N 1.34562 * 108.29190 * 0.40384 * 24 23 22 26 26 H 0.97001 * 126.74927 * 179.75540 * 25 24 23 27 27 N 1.31487 * 125.64764 * 180.25197 * 22 21 20 28 28 N 1.30750 * 107.17508 * 0.36963 * 21 20 19 29 29 O 1.21288 * 110.10375 * 359.76434 * 28 21 20 30 30 H 1.09003 * 109.47762 * 294.94804 * 1 2 3 31 31 H 1.09000 * 109.47216 * 54.94842 * 1 2 3 32 32 H 1.09004 * 109.47444 * 174.94124 * 1 2 3 33 33 H 1.08992 * 109.47486 * 239.99462 * 2 1 3 34 34 H 1.08992 * 109.47243 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46523 * 299.99820 * 3 2 1 36 36 H 1.08998 * 109.46931 * 59.99195 * 3 2 1 37 37 H 1.00897 * 111.00107 * 79.48632 * 6 4 2 38 38 H 1.09008 * 109.47231 * 54.82742 * 7 6 4 39 39 H 1.09002 * 109.47486 * 294.82407 * 7 6 4 40 40 H 0.96700 * 113.99513 * 299.99452 * 10 8 7 41 41 H 0.97008 * 120.00274 * 180.02562 * 14 13 11 42 42 H 1.08005 * 125.85048 * 180.18164 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7347 -0.1686 2.1379 6 7 1.4749 -2.0764 1.2973 7 6 1.4614 -2.5926 2.6725 8 6 0.7511 -3.9475 2.7017 9 1 1.2794 -4.6486 2.0556 10 8 -0.5916 -3.7916 2.2381 11 6 0.7377 -4.4775 4.1124 12 1 1.1901 -3.9049 4.9086 13 6 0.1470 -5.6926 4.3867 14 7 -0.4043 -6.3896 3.4172 15 14 0.1298 -6.3492 6.1354 16 1 -0.5895 -5.3938 7.0158 17 1 -0.5594 -7.6642 6.1636 18 1 1.5251 -6.5117 6.6169 19 6 3.5439 -0.8053 1.2020 20 7 4.3857 -0.0851 1.9008 21 6 5.6166 -0.5062 1.5324 22 6 6.9126 0.0030 2.0468 23 7 7.0637 0.9685 2.9634 24 6 8.3348 1.1687 3.1893 25 7 9.0399 0.3318 2.4064 26 1 10.0059 0.2584 2.3573 27 7 8.1023 -0.4147 1.6742 28 7 5.4518 -1.4424 0.6347 29 8 4.2695 -1.6250 0.4350 30 1 -0.3635 0.4335 0.9318 31 1 -0.3634 0.5902 -0.8413 32 1 -0.3634 -1.0237 -0.0906 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.9766 -2.6993 0.6822 38 1 0.9330 -1.8915 3.3187 39 1 2.4855 -2.7116 3.0261 40 1 -1.1218 -3.1801 2.7672 41 1 -0.8203 -7.2444 3.6103 42 1 8.7487 1.8859 3.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363800716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:48 Heat of formation + Delta-G solvation = 107.630708 kcal Electronic energy + Delta-G solvation = -27112.303142 eV Core-core repulsion = 23132.921085 eV Total energy + Delta-G solvation = -3979.382057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.67721 -42.51888 -38.09366 -36.04815 -35.69523 -33.36065 -33.09500 -32.49483 -32.05873 -31.23095 -28.43914 -27.06844 -26.03570 -25.58672 -23.96813 -23.42645 -22.44091 -21.36597 -20.59206 -19.77223 -18.95447 -18.19696 -17.58440 -16.94372 -16.20404 -15.90515 -15.50998 -15.29857 -14.95554 -14.61872 -14.49048 -13.99554 -13.78921 -13.46607 -12.86367 -12.78668 -12.63875 -12.30534 -12.24242 -12.03241 -11.95964 -11.55933 -11.22153 -11.13600 -10.96853 -10.91507 -10.87236 -10.77761 -10.69514 -10.60556 -10.56737 -10.40301 -10.07161 -9.70357 -9.05978 -8.56894 -8.32276 -7.99979 -5.99932 -4.18538 0.64374 1.22940 1.84092 1.98605 2.68325 2.88031 2.97058 3.30094 3.35386 3.37197 3.53998 4.22209 4.26589 4.38346 4.48075 4.86341 4.86731 4.97487 5.25508 5.28875 5.33249 5.47816 5.57596 5.62122 5.64200 5.78079 5.89130 5.92924 6.02983 6.06352 6.10390 6.15869 6.36773 6.44636 6.49375 6.66907 6.76927 7.22878 7.47680 7.53751 7.75540 7.85199 8.02608 8.18510 8.84616 9.46177 9.62045 11.04087 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003484 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.298492 B = 8035.245631 C = 9918.376255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.150 4.150 4 C 0.182 3.818 5 H 0.122 0.878 6 N -0.653 5.653 7 C 0.028 3.972 8 C 0.239 3.761 9 H 0.053 0.947 10 O -0.553 6.553 11 C -0.576 4.576 12 H 0.054 0.946 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.889 3.111 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.169 3.831 20 N -0.445 5.445 21 C 0.242 3.758 22 C 0.312 3.688 23 N -0.506 5.506 24 C 0.269 3.731 25 N -0.477 5.477 26 H 0.447 0.553 27 N -0.270 5.270 28 N -0.347 5.347 29 O 0.094 5.906 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.348 0.652 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.344 0.656 41 H 0.261 0.739 42 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.788 17.675 -4.561 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 C -0.207 4.207 4 C 0.068 3.932 5 H 0.140 0.860 6 N -0.282 5.282 7 C -0.100 4.100 8 C 0.180 3.820 9 H 0.071 0.929 10 O -0.354 6.354 11 C -0.614 4.614 12 H 0.072 0.928 13 C -0.125 4.125 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.055 4.055 20 N -0.178 5.178 21 C -0.030 4.030 22 C 0.030 3.970 23 N -0.234 5.234 24 C -0.031 4.031 25 N -0.198 5.198 26 H 0.294 0.706 27 N -0.103 5.103 28 N -0.052 5.052 29 O 0.029 5.971 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.167 0.833 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.187 0.813 41 H 0.071 0.929 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.837 16.789 -5.491 22.438 hybrid contribution 1.795 -0.128 1.886 2.607 sum 15.632 16.662 -3.604 23.129 Atomic orbital electron populations 1.21653 0.92527 1.03739 1.01062 1.21146 0.98051 0.95033 0.95909 1.21891 1.00550 0.95916 1.02389 1.20962 0.75440 0.94934 1.01874 0.86022 1.60736 1.55104 1.00927 1.11438 1.23123 0.99450 1.01075 0.86400 1.19249 0.80757 0.87619 0.94346 0.92882 1.86568 1.24532 1.67670 1.56659 1.21575 1.40239 1.05306 0.94298 0.92777 1.25000 0.94335 0.96378 0.96812 1.70065 1.34852 1.12930 1.31404 0.86741 0.78232 0.78241 0.85183 1.20074 1.21164 1.20291 1.30770 1.00951 0.86418 0.87359 1.72099 0.97417 1.24544 1.23738 1.21697 0.90593 0.94802 0.95934 1.19816 0.88454 0.93951 0.94771 1.70554 1.17396 1.17788 1.17645 1.26295 0.86936 0.94712 0.95109 1.48216 1.10619 1.29288 1.31636 0.70593 1.78400 0.97806 1.16837 1.17275 1.75000 0.95871 1.17138 1.17180 1.85308 1.11531 1.49517 1.50700 0.92737 0.93232 0.90080 0.90570 0.93498 0.92089 0.91963 0.83288 0.91231 0.95833 0.81309 0.92904 0.75067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.91 37.16 0.33 -1.14 16 2 C -0.08 -0.92 2.67 -90.62 -0.24 -1.17 16 3 C -0.15 -1.56 9.00 37.16 0.33 -1.23 16 4 C 0.18 2.46 2.11 -68.86 -0.15 2.32 16 5 H 0.12 1.65 7.74 -51.93 -0.40 1.25 16 6 N -0.65 -10.40 5.25 -107.95 -0.57 -10.96 16 7 C 0.03 0.54 5.10 -3.83 -0.02 0.52 16 8 C 0.24 5.82 3.07 -27.88 -0.09 5.73 16 9 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 10 O -0.55 -13.64 12.60 -35.23 -0.44 -14.08 16 11 C -0.58 -15.59 8.76 -34.44 -0.30 -15.90 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 14 N -0.86 -25.14 12.84 55.43 0.71 -24.43 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.17 2.55 5.90 -12.99 -0.08 2.48 16 20 N -0.44 -7.34 11.58 -9.88 -0.11 -7.46 16 21 C 0.24 4.09 8.16 -156.13 -1.27 2.82 16 22 C 0.31 4.75 8.08 -156.62 -1.27 3.49 16 23 N -0.51 -6.62 11.21 -12.37 -0.14 -6.76 16 24 C 0.27 1.97 13.11 -90.69 -1.19 0.78 16 25 N -0.48 -3.60 7.44 29.52 0.22 -3.38 16 26 H 0.45 1.34 8.96 -182.34 -1.63 -0.30 16 27 N -0.27 -3.62 12.83 32.11 0.41 -3.21 16 28 N -0.35 -5.90 12.20 30.96 0.38 -5.52 16 29 O 0.09 1.50 10.90 18.04 0.20 1.69 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.05 7.68 -51.93 -0.40 0.66 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.55 7.34 -51.93 -0.38 0.17 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.35 5.59 8.24 -39.29 -0.32 5.27 16 38 H 0.07 1.31 7.93 -51.92 -0.41 0.90 16 39 H 0.02 0.48 8.04 -51.93 -0.42 0.06 16 40 H 0.34 7.60 9.04 45.56 0.41 8.01 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.23 0.29 8.06 -52.48 -0.42 -0.13 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -35.35 365.91 -8.94 -44.29 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.06 Total: 7.29 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -4.03 Total: 0.86 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.90 Total: -61.72 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.25 Total: -12.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.35 -8.94 -44.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363800716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.919 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds