Wall clock time and date at job start Sat Apr 11 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47222 * 2 1 4 4 C 1.53001 * 109.46857 * 119.99538 * 2 1 3 5 5 H 1.08994 * 109.47370 * 296.10629 * 4 2 1 6 6 N 1.46903 * 109.47066 * 56.10763 * 4 2 1 7 7 C 1.46895 * 110.99899 * 203.44290 * 6 4 2 8 8 C 1.53004 * 109.47280 * 174.82451 * 7 6 4 9 9 H 1.09000 * 109.47113 * 59.99494 * 8 7 6 10 10 O 1.42909 * 109.47103 * 300.00331 * 8 7 6 11 11 C 1.50699 * 109.47508 * 179.97438 * 8 7 6 12 12 H 1.08002 * 119.99950 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00022 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00168 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00074 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47190 * 59.99988 * 15 13 11 17 17 H 1.48492 * 109.47202 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46895 * 300.00443 * 15 13 11 19 19 C 1.50704 * 109.46987 * 176.10444 * 4 2 1 20 20 N 1.30980 * 126.43663 * 104.71427 * 19 4 2 21 21 C 1.35210 * 105.57566 * 179.89733 * 20 19 4 22 22 C 1.48442 * 126.40918 * 180.14082 * 21 20 19 23 23 N 1.33978 * 125.64770 * 359.93925 * 22 21 20 24 24 C 1.30641 * 109.78832 * 179.85905 * 23 22 21 25 25 N 1.34562 * 108.29190 * 0.40384 * 24 23 22 26 26 H 0.97001 * 126.74927 * 179.75540 * 25 24 23 27 27 N 1.31487 * 125.64764 * 180.25197 * 22 21 20 28 28 N 1.30750 * 107.17508 * 0.36963 * 21 20 19 29 29 O 1.21288 * 110.10375 * 359.76434 * 28 21 20 30 30 H 1.09003 * 109.47762 * 294.94804 * 1 2 3 31 31 H 1.09000 * 109.47216 * 54.94842 * 1 2 3 32 32 H 1.09004 * 109.47444 * 174.94124 * 1 2 3 33 33 H 1.08992 * 109.47486 * 239.99462 * 2 1 3 34 34 H 1.08992 * 109.47243 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46523 * 299.99820 * 3 2 1 36 36 H 1.08998 * 109.46931 * 59.99195 * 3 2 1 37 37 H 1.00897 * 111.00107 * 79.48632 * 6 4 2 38 38 H 1.09008 * 109.47231 * 54.82742 * 7 6 4 39 39 H 1.09002 * 109.47486 * 294.82407 * 7 6 4 40 40 H 0.96700 * 113.99513 * 299.99452 * 10 8 7 41 41 H 0.97008 * 120.00274 * 180.02562 * 14 13 11 42 42 H 1.08005 * 125.85048 * 180.18164 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7347 -0.1686 2.1379 6 7 1.4749 -2.0764 1.2973 7 6 1.4614 -2.5926 2.6725 8 6 0.7511 -3.9475 2.7017 9 1 1.2794 -4.6486 2.0556 10 8 -0.5916 -3.7916 2.2381 11 6 0.7377 -4.4775 4.1124 12 1 1.1901 -3.9049 4.9086 13 6 0.1470 -5.6926 4.3867 14 7 -0.4043 -6.3896 3.4172 15 14 0.1298 -6.3492 6.1354 16 1 -0.5895 -5.3938 7.0158 17 1 -0.5594 -7.6642 6.1636 18 1 1.5251 -6.5117 6.6169 19 6 3.5439 -0.8053 1.2020 20 7 4.3857 -0.0851 1.9008 21 6 5.6166 -0.5062 1.5324 22 6 6.9126 0.0030 2.0468 23 7 7.0637 0.9685 2.9634 24 6 8.3348 1.1687 3.1893 25 7 9.0399 0.3318 2.4064 26 1 10.0059 0.2584 2.3573 27 7 8.1023 -0.4147 1.6742 28 7 5.4518 -1.4424 0.6347 29 8 4.2695 -1.6250 0.4350 30 1 -0.3635 0.4335 0.9318 31 1 -0.3634 0.5902 -0.8413 32 1 -0.3634 -1.0237 -0.0906 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.9766 -2.6993 0.6822 38 1 0.9330 -1.8915 3.3187 39 1 2.4855 -2.7116 3.0261 40 1 -1.1218 -3.1801 2.7672 41 1 -0.8203 -7.2444 3.6103 42 1 8.7487 1.8859 3.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363800716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:47 Heat of formation + Delta-G solvation = 78.230773 kcal Electronic energy + Delta-G solvation = -27113.578019 eV Core-core repulsion = 23132.921085 eV Total energy + Delta-G solvation = -3980.656934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.91126 -43.32076 -39.36180 -37.57578 -37.11572 -34.59200 -34.21585 -34.08970 -33.48404 -32.22011 -30.14340 -28.01489 -27.53766 -26.71926 -25.45650 -24.60089 -23.31436 -22.70666 -22.04517 -20.84336 -19.73821 -19.43223 -18.98469 -18.71200 -17.41325 -16.74235 -16.69145 -16.63884 -16.45362 -16.06425 -15.71779 -15.54814 -15.25030 -14.82193 -14.43438 -14.15221 -13.44726 -13.43314 -13.35369 -13.27659 -13.21179 -12.86985 -12.83461 -12.72916 -12.67340 -12.41810 -12.29735 -12.04536 -11.87422 -11.66299 -11.52126 -11.43288 -11.33759 -11.01280 -10.75578 -10.68766 -10.08261 -9.61885 -8.11658 -6.37155 -0.45311 0.20163 0.92369 1.22061 1.41483 1.42438 1.50554 1.51525 1.86856 2.12377 2.37970 2.44943 3.05681 3.15172 3.36194 3.59930 3.81273 3.97371 4.02024 4.17982 4.32500 4.34970 4.42177 4.47321 4.53388 4.59641 4.74018 4.76532 4.90958 4.94569 5.03283 5.04419 5.20429 5.28216 5.46669 5.62660 5.71837 5.75390 5.84234 6.03166 6.09887 6.22912 6.67016 6.75029 6.84373 7.37439 7.68875 8.92254 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003484 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.298492 B = 8035.245631 C = 9918.376255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.143 4.143 4 C 0.188 3.812 5 H 0.128 0.872 6 N -0.647 5.647 7 C 0.050 3.950 8 C 0.240 3.760 9 H 0.018 0.982 10 O -0.564 6.564 11 C -0.590 4.590 12 H 0.056 0.944 13 C 0.029 3.971 14 N -0.896 5.896 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.173 3.827 20 N -0.458 5.458 21 C 0.236 3.764 22 C 0.283 3.717 23 N -0.548 5.548 24 C 0.294 3.706 25 N -0.456 5.456 26 H 0.468 0.532 27 N -0.300 5.300 28 N -0.367 5.367 29 O 0.089 5.911 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.347 0.653 38 H 0.080 0.920 39 H 0.011 0.989 40 H 0.355 0.645 41 H 0.261 0.739 42 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 19.715 -3.411 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 C -0.201 4.201 4 C 0.074 3.926 5 H 0.145 0.855 6 N -0.276 5.276 7 C -0.079 4.079 8 C 0.182 3.818 9 H 0.036 0.964 10 O -0.367 6.367 11 C -0.629 4.629 12 H 0.074 0.926 13 C -0.174 4.174 14 N -0.532 5.532 15 Si 0.780 3.220 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.200 1.200 19 C -0.050 4.050 20 N -0.191 5.191 21 C -0.037 4.037 22 C 0.001 3.999 23 N -0.278 5.278 24 C -0.003 4.003 25 N -0.179 5.179 26 H 0.319 0.681 27 N -0.135 5.135 28 N -0.073 5.073 29 O 0.026 5.974 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.099 0.901 39 H 0.029 0.971 40 H 0.200 0.800 41 H 0.070 0.930 42 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 14.839 18.850 -4.341 24.380 hybrid contribution 1.614 -0.681 1.526 2.323 sum 16.452 18.169 -2.816 24.672 Atomic orbital electron populations 1.21598 0.91912 1.02816 1.02106 1.21142 0.98322 0.95464 0.94564 1.21840 0.99456 0.95148 1.03642 1.21119 0.74464 0.93478 1.03508 0.85475 1.60661 1.55626 1.01968 1.09359 1.22666 0.97994 0.98764 0.88487 1.19045 0.80935 0.89486 0.92356 0.96412 1.86511 1.24893 1.68351 1.56960 1.21995 1.39700 1.05579 0.95581 0.92586 1.25824 0.94006 0.96727 1.00816 1.70197 1.36078 1.13373 1.33585 0.85687 0.78295 0.77697 0.80333 1.18947 1.20907 1.19966 1.31011 1.01289 0.85905 0.86819 1.72082 0.97651 1.25171 1.24184 1.22156 0.91606 0.94406 0.95533 1.19794 0.88217 0.95517 0.96378 1.70496 1.20593 1.18345 1.18367 1.27396 0.85223 0.93751 0.93906 1.48125 1.11174 1.28136 1.30428 0.68077 1.78260 0.98178 1.18334 1.18726 1.74968 0.96226 1.18014 1.18137 1.85276 1.11462 1.49743 1.50944 0.92451 0.91256 0.92128 0.90402 0.95068 0.90161 0.91411 0.83409 0.90124 0.97093 0.80029 0.92971 0.69085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.91 71.98 0.64 -1.98 16 2 C -0.07 -1.62 2.67 -10.79 -0.03 -1.65 16 3 C -0.14 -2.75 9.00 71.98 0.65 -2.10 16 4 C 0.19 5.01 2.11 44.17 0.09 5.11 16 5 H 0.13 3.31 7.74 -2.39 -0.02 3.29 16 6 N -0.65 -20.73 5.25 -495.43 -2.60 -23.33 16 7 C 0.05 1.96 5.10 86.31 0.44 2.40 16 8 C 0.24 11.96 3.07 29.85 0.09 12.05 16 9 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 10 O -0.56 -28.20 12.60 -148.98 -1.88 -30.07 16 11 C -0.59 -32.24 8.76 25.60 0.22 -32.01 16 12 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 13 C 0.03 1.63 5.40 84.65 0.46 2.09 16 14 N -0.90 -53.37 12.84 21.44 0.28 -53.10 16 15 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 C 0.17 5.30 5.90 88.36 0.52 5.83 16 20 N -0.46 -15.30 11.58 -302.52 -3.50 -18.80 16 21 C 0.24 8.14 8.16 137.31 1.12 9.26 16 22 C 0.28 8.63 8.08 137.48 1.11 9.74 16 23 N -0.55 -13.72 11.21 -193.05 -2.16 -15.89 16 24 C 0.29 3.43 13.11 180.37 2.36 5.79 16 25 N -0.46 -5.85 7.44 -60.51 -0.45 -6.30 16 26 H 0.47 1.48 8.96 -213.10 -1.91 -0.43 16 27 N -0.30 -7.91 12.83 -52.33 -0.67 -8.59 16 28 N -0.37 -12.91 12.20 -59.16 -0.72 -13.63 16 29 O 0.09 2.90 10.90 74.62 0.81 3.72 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.52 7.68 -2.38 -0.02 1.50 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.03 0.70 7.34 -2.39 -0.02 0.68 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.35 11.44 8.24 -89.70 -0.74 10.70 16 38 H 0.08 2.97 7.93 -2.38 -0.02 2.95 16 39 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 40 H 0.36 15.70 9.04 -74.06 -0.67 15.03 16 41 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 42 H 0.29 -0.79 8.06 -2.91 -0.02 -0.82 16 Total: -1.00 -79.22 365.91 -3.41 -82.63 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -2.22 Total: 23.30 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 7.68 Total: 14.52 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -9.83 Total: -139.64 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.06 Total: -26.36 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -79.22 -3.41 -82.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363800716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.862 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds