Wall clock time and date at job start Sat Apr 11 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.53005 * 109.47303 * 239.99857 * 2 1 3 5 5 H 1.08998 * 109.46908 * 60.00059 * 4 2 1 6 6 N 1.46900 * 109.46993 * 299.99976 * 4 2 1 7 7 C 1.52996 * 109.47303 * 180.02562 * 4 2 1 8 8 C 1.52997 * 109.47380 * 185.00227 * 7 4 2 9 9 N 1.46496 * 109.47305 * 180.02562 * 8 7 4 10 10 C 1.34775 * 119.99994 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00053 * 359.97438 * 10 9 8 12 12 C 1.47866 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.39682 * 120.09917 * 359.71405 * 12 10 9 14 14 C 1.38039 * 120.03423 * 179.74715 * 13 12 10 15 15 C 1.38182 * 120.24587 * 0.55755 * 14 13 12 16 16 C 1.39178 * 120.20123 * 359.69829 * 15 14 13 17 17 S 1.76196 * 120.02061 * 179.97438 * 16 15 14 18 18 C 1.76205 * 100.00246 * 265.52943 * 17 16 15 19 19 H 1.08006 * 119.99827 * 5.11451 * 18 17 16 20 20 C 1.38725 * 120.00187 * 185.11825 * 18 17 16 21 21 N 1.31626 * 120.00196 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99867 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47237 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47177 * 120.00102 * 22 20 18 25 25 H 1.48505 * 109.47139 * 239.99960 * 22 20 18 26 26 C 1.38881 * 119.95994 * 0.02562 * 16 15 14 27 27 H 1.09006 * 109.46935 * 60.00253 * 1 2 3 28 28 H 1.09006 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47642 * 300.00357 * 1 2 3 30 30 H 1.08998 * 109.47090 * 120.00028 * 2 1 3 31 31 H 1.08998 * 109.47083 * 59.99300 * 3 2 1 32 32 H 1.08994 * 109.47333 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47090 * 300.00028 * 3 2 1 34 34 H 1.00900 * 110.99648 * 176.04186 * 6 4 2 35 35 H 1.00900 * 111.00407 * 300.00210 * 6 4 2 36 36 H 1.08999 * 109.46950 * 305.00253 * 7 4 2 37 37 H 1.09000 * 109.47321 * 64.99723 * 7 4 2 38 38 H 1.09003 * 109.46855 * 300.00390 * 8 7 4 39 39 H 1.09000 * 109.47305 * 59.99486 * 8 7 4 40 40 H 0.96998 * 119.99994 * 359.97438 * 9 8 7 41 41 H 1.08001 * 119.98094 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.87844 * 180.25769 * 14 13 12 43 43 H 1.08001 * 119.89472 * 179.71592 * 15 14 13 44 44 H 0.96998 * 119.99895 * 180.02562 * 21 20 18 45 45 H 1.07993 * 120.12208 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2075 -2.1392 6 7 1.5504 -2.1063 -1.2492 7 6 3.5700 -0.7219 -1.2489 8 6 4.0801 -1.3314 -2.5562 9 7 5.5450 -1.3325 -2.5556 10 6 6.2190 -1.8255 -3.6136 11 8 5.6113 -2.2696 -4.5680 12 6 7.6976 -1.8271 -3.6127 13 6 8.3981 -1.3128 -2.5192 14 6 9.7785 -1.3197 -2.5176 15 6 10.4732 -1.8239 -3.6004 16 6 9.7855 -2.3340 -4.6976 17 16 10.6762 -2.9751 -6.0761 18 6 10.7144 -1.5466 -7.1069 19 1 10.3232 -0.6077 -6.7435 20 6 11.2469 -1.6277 -8.3853 21 7 11.7232 -2.7720 -8.8285 22 14 11.2867 -0.1134 -9.4784 23 1 10.6934 1.0375 -8.7514 24 1 12.6927 0.1999 -9.8391 25 1 10.5051 -0.3740 -10.7139 26 6 8.3967 -2.3364 -4.7057 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.8198 -2.5850 -2.0955 35 1 1.8738 -2.6042 -0.4334 36 1 3.9336 0.3018 -1.1591 37 1 3.9330 -1.3115 -0.4071 38 1 3.7163 -2.3550 -2.6460 39 1 3.7171 -0.7418 -3.3980 40 1 6.0300 -0.9778 -1.7942 41 1 7.8594 -0.9136 -1.6725 42 1 10.3175 -0.9252 -1.6689 43 1 11.5532 -1.8224 -3.5951 44 1 12.0958 -2.8286 -9.7223 45 1 7.8604 -2.7320 -5.5555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575839343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:08 Heat of formation + Delta-G solvation = -37.082503 kcal Electronic energy + Delta-G solvation = -23631.269095 eV Core-core repulsion = 20159.612266 eV Total energy + Delta-G solvation = -3471.656830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05956 -38.62191 -37.75931 -35.10607 -32.95250 -32.52098 -31.28657 -30.59631 -29.72850 -27.31213 -25.59241 -25.50853 -23.44498 -22.40753 -21.82455 -20.67822 -20.11822 -18.33269 -17.39825 -16.49053 -16.18095 -15.92471 -15.56195 -15.30460 -15.02663 -14.86324 -14.63428 -14.40405 -14.08690 -13.99649 -13.62720 -13.40350 -12.96458 -12.89511 -12.63593 -12.44344 -12.24349 -12.13600 -11.67009 -11.57269 -11.25218 -11.19675 -11.17094 -11.13682 -11.11408 -10.86895 -10.71983 -10.00386 -9.82899 -9.26767 -9.18264 -9.05489 -9.03372 -8.61920 -8.05378 -6.72914 -6.30088 -4.04133 1.12722 1.63320 2.99539 3.02535 3.18518 3.21676 3.27906 3.45497 4.06278 4.09979 4.19974 4.24007 4.46725 4.62948 4.68996 4.77557 4.88007 4.99806 5.04790 5.06869 5.12771 5.20401 5.27414 5.29694 5.36360 5.45848 5.53803 5.58565 5.62460 5.66950 5.71521 5.77597 5.84238 5.95526 5.98235 6.04931 6.21715 6.27895 6.54975 6.60120 6.75650 6.90159 7.05109 7.15678 7.42250 7.56446 8.23442 8.31540 9.15881 10.76693 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002206 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.227289 B =12690.898146 C =13095.428067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.152 4.152 4 C 0.099 3.901 5 H 0.084 0.916 6 N -0.843 5.843 7 C -0.172 4.172 8 C 0.119 3.881 9 N -0.733 5.733 10 C 0.563 3.437 11 O -0.533 6.533 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.018 4.018 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.344 0.656 35 H 0.339 0.661 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.269 0.731 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 5.890 20.339 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.013 4.013 5 H 0.102 0.898 6 N -0.372 5.372 7 C -0.212 4.212 8 C -0.004 4.004 9 N -0.386 5.386 10 C 0.351 3.649 11 O -0.411 6.411 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.137 4.137 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.040 4.040 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.150 0.850 44 H 0.079 0.921 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.672 4.712 19.265 25.910 hybrid contribution 0.830 2.088 -0.080 2.248 sum -15.841 6.800 19.185 25.793 Atomic orbital electron populations 1.21714 0.94375 1.02609 1.00890 1.21087 0.96731 0.95655 0.97121 1.21932 1.01126 0.95885 1.02055 1.21449 0.90245 0.90414 0.99184 0.89785 1.58906 1.67142 1.03196 1.07997 1.22766 0.98609 1.02583 0.97206 1.21313 0.80056 1.01181 0.97888 1.45877 1.06886 1.64898 1.20958 1.18440 0.87542 0.76955 0.81953 1.90779 1.69988 1.46021 1.34262 1.19857 0.91839 1.06814 0.97499 1.21121 0.94668 0.98533 0.96629 1.21059 0.93817 1.02149 0.99058 1.21969 1.00491 0.93035 0.92088 1.22868 0.96035 1.01487 1.01342 1.83613 1.67653 1.19515 1.09251 1.22879 1.47072 0.95510 1.01201 0.90569 1.25012 0.94590 0.97257 0.96791 1.69997 1.37809 1.24351 1.18338 0.86059 0.77996 0.81423 0.79774 1.19516 1.20464 1.20411 1.21959 0.93450 0.92560 0.96053 0.93032 0.91405 0.93479 0.91480 0.92532 0.92399 0.92468 0.84177 0.84861 0.90189 0.91234 0.91811 0.91355 0.76609 0.86616 0.85842 0.85025 0.92091 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.04 37.16 0.34 -0.53 16 2 C -0.09 -0.50 2.66 -90.62 -0.24 -0.74 16 3 C -0.15 -0.82 8.85 37.16 0.33 -0.49 16 4 C 0.10 0.62 2.39 -67.71 -0.16 0.46 16 5 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 6 N -0.84 -5.33 8.42 -4.67 -0.04 -5.37 16 7 C -0.17 -1.06 4.76 -26.73 -0.13 -1.19 16 8 C 0.12 1.11 5.44 -4.05 -0.02 1.09 16 9 N -0.73 -8.10 5.51 -61.25 -0.34 -8.44 16 10 C 0.56 9.01 7.77 -12.32 -0.10 8.91 16 11 O -0.53 -10.58 16.34 5.32 0.09 -10.49 16 12 C -0.16 -2.60 5.87 -104.99 -0.62 -3.22 16 13 C -0.09 -1.22 9.54 -39.12 -0.37 -1.59 16 14 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 15 C -0.05 -0.97 9.79 -39.25 -0.38 -1.36 16 16 C -0.11 -2.28 5.45 -38.99 -0.21 -2.49 16 17 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 18 C -0.52 -14.68 9.46 30.91 0.29 -14.39 16 19 H 0.08 2.14 7.79 -52.48 -0.41 1.73 16 20 C 0.07 2.04 5.49 -17.46 -0.10 1.94 16 21 N -0.87 -25.46 13.22 55.49 0.73 -24.72 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.47 7.60 -51.93 -0.39 0.08 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.29 6.32 -51.93 -0.33 -0.03 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.34 2.27 7.55 -39.29 -0.30 1.97 16 35 H 0.34 1.84 9.00 -39.29 -0.35 1.49 16 36 H 0.08 0.47 6.18 -51.93 -0.32 0.15 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.62 6.87 -51.93 -0.36 0.27 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.40 3.33 6.50 -40.82 -0.27 3.06 16 41 H 0.12 1.07 6.40 -52.49 -0.34 0.74 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.14 3.08 7.65 -52.49 -0.40 2.67 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -32.66 383.05 -10.07 -42.73 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.82 Total: 3.95 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.13 Total: -16.72 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.36 Total: -38.53 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.66 -10.07 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575839343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.647 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds