Wall clock time and date at job start Sat Apr 11 2020 00:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.53005 * 109.47303 * 239.99857 * 2 1 3 5 5 H 1.08998 * 109.46908 * 60.00059 * 4 2 1 6 6 N 1.46900 * 109.46993 * 299.99976 * 4 2 1 7 7 C 1.52996 * 109.47303 * 180.02562 * 4 2 1 8 8 C 1.52997 * 109.47380 * 185.00227 * 7 4 2 9 9 N 1.46496 * 109.47305 * 180.02562 * 8 7 4 10 10 C 1.34775 * 119.99994 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00053 * 359.97438 * 10 9 8 12 12 C 1.47866 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.39682 * 120.09917 * 359.71405 * 12 10 9 14 14 C 1.38039 * 120.03423 * 179.74715 * 13 12 10 15 15 C 1.38182 * 120.24587 * 0.55755 * 14 13 12 16 16 C 1.39178 * 120.20123 * 359.69829 * 15 14 13 17 17 S 1.76196 * 120.02061 * 179.97438 * 16 15 14 18 18 C 1.76205 * 100.00246 * 265.52943 * 17 16 15 19 19 H 1.08006 * 119.99827 * 5.11451 * 18 17 16 20 20 C 1.38725 * 120.00187 * 185.11825 * 18 17 16 21 21 N 1.31626 * 120.00196 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99867 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47237 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47177 * 120.00102 * 22 20 18 25 25 H 1.48505 * 109.47139 * 239.99960 * 22 20 18 26 26 C 1.38881 * 119.95994 * 0.02562 * 16 15 14 27 27 H 1.09006 * 109.46935 * 60.00253 * 1 2 3 28 28 H 1.09006 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47642 * 300.00357 * 1 2 3 30 30 H 1.08998 * 109.47090 * 120.00028 * 2 1 3 31 31 H 1.08998 * 109.47083 * 59.99300 * 3 2 1 32 32 H 1.08994 * 109.47333 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47090 * 300.00028 * 3 2 1 34 34 H 1.00900 * 110.99648 * 176.04186 * 6 4 2 35 35 H 1.00900 * 111.00407 * 300.00210 * 6 4 2 36 36 H 1.08999 * 109.46950 * 305.00253 * 7 4 2 37 37 H 1.09000 * 109.47321 * 64.99723 * 7 4 2 38 38 H 1.09003 * 109.46855 * 300.00390 * 8 7 4 39 39 H 1.09000 * 109.47305 * 59.99486 * 8 7 4 40 40 H 0.96998 * 119.99994 * 359.97438 * 9 8 7 41 41 H 1.08001 * 119.98094 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.87844 * 180.25769 * 14 13 12 43 43 H 1.08001 * 119.89472 * 179.71592 * 15 14 13 44 44 H 0.96998 * 119.99895 * 180.02562 * 21 20 18 45 45 H 1.07993 * 120.12208 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2075 -2.1392 6 7 1.5504 -2.1063 -1.2492 7 6 3.5700 -0.7219 -1.2489 8 6 4.0801 -1.3314 -2.5562 9 7 5.5450 -1.3325 -2.5556 10 6 6.2190 -1.8255 -3.6136 11 8 5.6113 -2.2696 -4.5680 12 6 7.6976 -1.8271 -3.6127 13 6 8.3981 -1.3128 -2.5192 14 6 9.7785 -1.3197 -2.5176 15 6 10.4732 -1.8239 -3.6004 16 6 9.7855 -2.3340 -4.6976 17 16 10.6762 -2.9751 -6.0761 18 6 10.7144 -1.5466 -7.1069 19 1 10.3232 -0.6077 -6.7435 20 6 11.2469 -1.6277 -8.3853 21 7 11.7232 -2.7720 -8.8285 22 14 11.2867 -0.1134 -9.4784 23 1 10.6934 1.0375 -8.7514 24 1 12.6927 0.1999 -9.8391 25 1 10.5051 -0.3740 -10.7139 26 6 8.3967 -2.3364 -4.7057 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.8198 -2.5850 -2.0955 35 1 1.8738 -2.6042 -0.4334 36 1 3.9336 0.3018 -1.1591 37 1 3.9330 -1.3115 -0.4071 38 1 3.7163 -2.3550 -2.6460 39 1 3.7171 -0.7418 -3.3980 40 1 6.0300 -0.9778 -1.7942 41 1 7.8594 -0.9136 -1.6725 42 1 10.3175 -0.9252 -1.6689 43 1 11.5532 -1.8224 -3.5951 44 1 12.0958 -2.8286 -9.7223 45 1 7.8604 -2.7320 -5.5555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575839343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:07 Heat of formation + Delta-G solvation = -59.512916 kcal Electronic energy + Delta-G solvation = -23632.241751 eV Core-core repulsion = 20159.612266 eV Total energy + Delta-G solvation = -3472.629485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27903 -39.43119 -38.85047 -36.09369 -34.67204 -33.58545 -32.42233 -31.94046 -30.54429 -27.83563 -27.75910 -26.24959 -24.58012 -23.63822 -22.61230 -21.75981 -20.77478 -19.99962 -19.00011 -17.49519 -17.06797 -16.95472 -16.82718 -16.67319 -16.36711 -15.95144 -15.71011 -15.22885 -15.19755 -14.86327 -14.78954 -14.63726 -14.40401 -13.86085 -13.44558 -13.29059 -13.17069 -13.06306 -12.99748 -12.88362 -12.72738 -12.64392 -12.40734 -12.13085 -11.75698 -11.72196 -11.67807 -11.37299 -11.27849 -11.15979 -10.77091 -10.32289 -9.92292 -9.72000 -9.56070 -8.82352 -8.41212 -6.21302 -0.20725 0.23448 1.28080 1.34989 1.45076 1.63134 1.76501 2.02424 2.22663 2.78105 2.91741 3.39762 3.58598 3.62840 3.67207 3.92154 3.96938 4.01079 4.05465 4.24155 4.29052 4.34649 4.46401 4.49261 4.58229 4.64384 4.67534 4.84178 4.87955 4.90392 5.02813 5.06869 5.10635 5.19493 5.20671 5.27715 5.30954 5.36154 5.36819 5.48963 5.53885 5.56273 5.84579 6.14048 6.27842 6.42245 6.58901 6.99173 7.09546 8.66089 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002206 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.227289 B =12690.898146 C =13095.428067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C -0.152 4.152 4 C 0.102 3.898 5 H 0.071 0.929 6 N -0.849 5.849 7 C -0.157 4.157 8 C 0.117 3.883 9 N -0.706 5.706 10 C 0.559 3.441 11 O -0.583 6.583 12 C -0.158 4.158 13 C -0.062 4.062 14 C -0.120 4.120 15 C -0.063 4.063 16 C -0.130 4.130 17 S -0.096 6.096 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.018 3.982 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.046 4.046 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.342 0.658 35 H 0.345 0.655 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.417 0.583 41 H 0.175 0.825 42 H 0.177 0.823 43 H 0.135 0.865 44 H 0.274 0.726 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.475 8.453 23.942 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.011 4.011 5 H 0.089 0.911 6 N -0.379 5.379 7 C -0.196 4.196 8 C -0.006 4.006 9 N -0.359 5.359 10 C 0.348 3.652 11 O -0.464 6.464 12 C -0.163 4.163 13 C -0.081 4.081 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.241 4.241 17 S 0.139 5.861 18 C -0.683 4.683 19 H 0.085 0.915 20 C -0.187 4.187 21 N -0.542 5.542 22 Si 0.815 3.185 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.198 1.198 26 C -0.068 4.068 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.256 0.744 41 H 0.192 0.808 42 H 0.194 0.806 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.129 7.288 22.936 29.540 hybrid contribution 0.849 1.291 -1.006 1.844 sum -16.280 8.579 21.930 28.628 Atomic orbital electron populations 1.21694 0.94976 1.01970 1.00843 1.21054 0.96180 0.95994 0.96915 1.21932 1.01597 0.95397 1.02022 1.21409 0.90319 0.90279 0.99050 0.91055 1.58891 1.67416 1.03380 1.08180 1.22668 0.98238 1.03152 0.95561 1.21442 0.78721 1.01085 0.99352 1.45675 1.07655 1.62741 1.19806 1.18436 0.87340 0.76994 0.82460 1.90763 1.70712 1.48500 1.36472 1.19969 0.92498 1.06491 0.97358 1.21722 0.94712 0.95256 0.96368 1.21569 0.94134 0.99573 0.98694 1.22090 1.00990 0.93114 0.92150 1.22514 0.96029 1.04904 1.00690 1.83486 1.69276 1.20906 1.12438 1.23093 1.47194 0.95798 1.02173 0.91490 1.26027 0.93923 1.00603 0.98162 1.70114 1.38600 1.26533 1.18944 0.84983 0.78670 0.77300 0.77539 1.19038 1.18932 1.19777 1.21632 0.93246 0.94969 0.96966 0.93758 0.92318 0.92863 0.90761 0.92122 0.91591 0.93028 0.84491 0.84113 0.89022 0.89599 0.92307 0.92848 0.74445 0.80751 0.80566 0.84673 0.91679 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.04 71.98 0.65 -0.87 16 2 C -0.08 -0.75 2.66 -10.79 -0.03 -0.77 16 3 C -0.15 -1.21 8.85 71.98 0.64 -0.57 16 4 C 0.10 1.06 2.39 44.92 0.11 1.17 16 5 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 6 N -0.85 -9.50 8.42 -168.68 -1.42 -10.92 16 7 C -0.16 -1.41 4.76 30.59 0.15 -1.26 16 8 C 0.12 1.95 5.44 86.38 0.47 2.42 16 9 N -0.71 -13.44 5.51 -465.96 -2.57 -16.00 16 10 C 0.56 17.39 7.77 86.79 0.67 18.06 16 11 O -0.58 -23.93 16.34 -3.89 -0.06 -24.00 16 12 C -0.16 -5.09 5.87 -20.10 -0.12 -5.21 16 13 C -0.06 -1.36 9.54 22.57 0.22 -1.15 16 14 C -0.12 -2.81 10.02 22.21 0.22 -2.59 16 15 C -0.06 -2.15 9.79 22.48 0.22 -1.93 16 16 C -0.13 -5.77 5.45 22.65 0.12 -5.65 16 17 S -0.10 -5.27 21.41 -56.49 -1.21 -6.48 16 18 C -0.54 -31.69 9.46 67.94 0.64 -31.05 16 19 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 20 C 0.02 1.04 5.49 84.84 0.47 1.51 16 21 N -0.91 -54.96 13.22 21.63 0.29 -54.67 16 22 Si 0.99 44.98 29.55 68.60 2.03 47.00 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 C -0.05 -1.98 9.34 22.70 0.21 -1.76 16 27 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.75 7.60 -2.38 -0.02 0.74 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.42 6.32 -2.39 -0.02 0.41 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.34 4.21 7.55 -89.69 -0.68 3.53 16 35 H 0.35 3.04 9.00 -89.69 -0.81 2.24 16 36 H 0.09 0.67 6.18 -2.39 -0.01 0.66 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 1.08 6.87 -2.39 -0.02 1.06 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.42 4.68 6.50 -92.71 -0.60 4.08 16 41 H 0.18 1.82 6.40 -2.91 -0.02 1.80 16 42 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.10 4.96 7.65 -2.91 -0.02 4.94 16 Total: -1.00 -78.42 383.05 0.63 -77.79 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -1.07 Total: 16.93 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 4.64 Total: -29.65 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -3.70 Total: -81.59 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -24.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.21 Total: -6.48 kcal Total: -78.42 0.63 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575839343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.279 kcal (2) G-P(sol) polarization free energy of solvation -78.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds