Wall clock time and date at job start Sat Apr 11 2020 00:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32627 * 1 3 3 C 1.47698 * 120.00015 * 2 1 4 4 C 1.39500 * 120.18194 * 0.25288 * 3 2 1 5 5 C 1.37958 * 119.92487 * 180.32442 * 4 3 2 6 6 C 1.38433 * 120.29251 * 359.67000 * 5 4 3 7 7 C 1.38159 * 120.36582 * 0.02745 * 6 5 4 8 8 C 1.38701 * 120.06559 * 0.02562 * 7 6 5 9 9 N 1.39704 * 120.14695 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99634 * 21.30188 * 9 8 7 11 11 O 1.21588 * 120.00362 * 5.41328 * 10 9 8 12 12 N 1.34779 * 119.99558 * 185.41852 * 10 9 8 13 13 C 1.39939 * 119.99661 * 185.38763 * 12 10 9 14 14 C 1.38870 * 120.07054 * 213.36530 * 13 12 10 15 15 C 1.38116 * 119.92809 * 180.27586 * 14 13 12 16 16 C 1.38278 * 120.06845 * 359.47237 * 15 14 13 17 17 C 1.50697 * 119.92920 * 180.27222 * 16 15 14 18 18 C 1.50698 * 109.47707 * 270.27682 * 17 16 15 19 19 H 1.08003 * 119.99215 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00586 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99597 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47036 * 90.00012 * 22 20 18 24 24 H 1.48497 * 109.47069 * 209.99402 * 22 20 18 25 25 H 1.48493 * 109.47295 * 329.99905 * 22 20 18 26 26 C 1.38283 * 120.14234 * 0.55420 * 16 15 14 27 27 C 1.38109 * 120.06991 * 359.69640 * 26 16 15 28 28 H 1.07999 * 120.00662 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.00413 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99751 * 179.97438 * 2 1 3 31 31 H 1.07998 * 120.03284 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.85016 * 179.70414 * 5 4 3 33 33 H 1.07997 * 119.81619 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.96479 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00632 * 201.30909 * 9 8 7 36 36 H 0.96997 * 120.00512 * 5.38609 * 12 10 9 37 37 H 1.07997 * 120.03324 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.96330 * 179.72129 * 15 14 13 39 39 H 1.09003 * 109.47213 * 30.27963 * 17 16 15 40 40 H 1.09005 * 109.47104 * 150.27696 * 17 16 15 41 41 H 0.97001 * 120.00038 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.96274 * 179.72933 * 26 16 15 43 43 H 1.07998 * 120.03733 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3263 0.0000 0.0000 3 6 2.0648 1.2791 0.0000 4 6 1.3711 2.4894 0.0053 5 6 2.0662 3.6811 -0.0015 6 6 3.4505 3.6819 -0.0067 7 6 4.1497 2.4903 -0.0057 8 6 3.4661 1.2835 0.0000 9 7 4.1714 0.0776 0.0005 10 6 5.4519 0.0461 0.4198 11 8 5.9626 1.0445 0.8895 12 7 6.1663 -1.0923 0.3183 13 6 7.4568 -1.1586 0.8553 14 6 8.4286 -1.9347 0.2374 15 6 9.6998 -2.0026 0.7731 16 6 10.0084 -1.2901 1.9173 17 6 11.3981 -1.3615 2.4957 18 6 11.4748 -2.5002 3.4799 19 1 10.6041 -3.1108 3.6680 20 6 12.6562 -2.7618 4.1408 21 7 13.7163 -2.0179 3.9120 22 14 12.7510 -4.1728 5.3612 23 1 13.1612 -5.4125 4.6537 24 1 13.7478 -3.8508 6.4137 25 1 11.4196 -4.3771 5.9862 26 6 9.0428 -0.5167 2.5353 27 6 7.7684 -0.4488 2.0075 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8662 -0.9353 0.0004 31 1 0.2912 2.4935 0.0090 32 1 1.5280 4.6174 -0.0022 33 1 3.9869 4.6193 -0.0116 34 1 5.2297 2.4986 -0.0102 35 1 3.7396 -0.7370 -0.3011 36 1 5.7860 -1.8656 -0.1269 37 1 8.1892 -2.4885 -0.6583 38 1 10.4547 -2.6095 0.2956 39 1 12.1176 -1.5256 1.6935 40 1 11.6285 -0.4254 3.0045 41 1 14.5476 -2.2021 4.3767 42 1 9.2858 0.0352 3.4314 43 1 7.0146 0.1551 2.4908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673804445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:13 Heat of formation + Delta-G solvation = 48.902975 kcal Electronic energy + Delta-G solvation = -24966.992758 eV Core-core repulsion = 21363.620587 eV Total energy + Delta-G solvation = -3603.372171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21356 -39.49684 -38.22530 -35.23319 -35.05583 -34.38054 -33.02982 -30.76935 -30.31556 -29.83930 -29.18059 -26.57031 -24.16521 -23.70597 -22.57494 -22.36495 -21.01634 -20.26390 -20.06212 -18.72941 -18.22461 -16.99573 -16.30816 -16.08517 -15.81975 -15.42018 -14.96416 -14.88269 -14.30433 -14.22737 -14.13209 -13.96117 -13.47525 -13.34584 -13.06031 -12.86220 -12.62656 -12.39568 -12.05445 -11.62594 -11.43338 -11.36466 -11.27324 -10.87310 -10.78797 -10.72477 -10.60246 -10.36404 -10.19940 -9.87089 -9.46049 -9.28841 -8.72783 -8.42051 -8.30856 -8.10110 -7.39609 -6.03291 -4.07380 0.64027 1.18472 1.88847 2.04141 2.23008 2.31730 2.94861 3.30375 3.36809 3.40951 3.73763 3.83724 4.37717 4.38535 4.47265 4.55308 4.72934 4.91387 5.03421 5.20336 5.30544 5.31952 5.39303 5.48167 5.52756 5.65323 5.83881 5.88056 6.00103 6.05122 6.06331 6.15832 6.18101 6.22780 6.37694 6.40285 6.54672 6.63667 6.84095 6.87253 6.96083 7.15542 7.20170 7.51598 7.64340 7.70223 7.86459 7.92412 8.26310 8.32802 8.97904 9.56285 11.06282 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002154 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.528399 B =12994.144301 C =13350.272899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.092 4.092 5 C -0.145 4.145 6 C -0.093 4.093 7 C -0.138 4.138 8 C 0.185 3.815 9 N -0.680 5.680 10 C 0.700 3.300 11 O -0.549 6.549 12 N -0.674 5.674 13 C 0.118 3.882 14 C -0.142 4.142 15 C -0.107 4.107 16 C -0.041 4.041 17 C 0.047 3.953 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.106 4.106 27 C -0.116 4.116 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.158 0.842 35 H 0.406 0.594 36 H 0.403 0.597 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.084 5.313 -11.466 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.111 4.111 5 C -0.164 4.164 6 C -0.112 4.112 7 C -0.158 4.158 8 C 0.089 3.911 9 N -0.325 5.325 10 C 0.402 3.598 11 O -0.424 6.424 12 N -0.321 5.321 13 C 0.026 3.974 14 C -0.163 4.163 15 C -0.126 4.126 16 C -0.042 4.042 17 C 0.010 3.990 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.125 4.125 27 C -0.136 4.136 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.175 0.825 35 H 0.242 0.758 36 H 0.238 0.762 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.140 0.860 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.391 6.183 -10.984 28.347 hybrid contribution -0.332 -1.691 0.328 1.754 sum -25.722 4.493 -10.657 28.202 Atomic orbital electron populations 1.24311 0.95437 1.02326 0.99662 1.21546 0.95319 0.95296 1.01095 1.18678 0.90641 0.94034 1.07050 1.21038 0.99553 0.91134 0.99332 1.21038 0.94434 0.97845 1.03045 1.21179 0.94046 0.97942 0.98021 1.21671 1.02709 0.90275 1.01163 1.17595 0.89621 0.85135 0.98751 1.42593 1.11769 1.10465 1.67717 1.15902 0.80669 0.84049 0.79202 1.90907 1.69681 1.32814 1.48990 1.42467 1.15345 1.13766 1.60521 1.17270 0.82752 1.02624 0.94794 1.20701 0.92950 1.02567 1.00052 1.20875 0.95255 0.99748 0.96715 1.20727 0.98616 0.92080 0.92779 1.18358 0.86699 0.97950 0.95944 1.21061 0.96700 1.14065 1.23067 0.92473 1.25019 0.95722 0.96625 0.97045 1.69960 1.01505 1.39052 1.42765 0.86538 0.77887 0.82369 0.80917 1.20621 1.21175 1.19832 1.20999 0.92134 0.99528 0.99850 1.21004 0.97724 1.00415 0.94427 0.87907 0.87747 0.87099 0.85563 0.85982 0.85644 0.82502 0.75779 0.76235 0.86787 0.85912 0.95283 0.95249 0.92849 0.86018 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 14.15 28.83 0.41 -0.67 16 2 C -0.11 -0.84 9.54 -37.62 -0.36 -1.20 16 3 C -0.10 -0.95 5.88 -104.85 -0.62 -1.57 16 4 C -0.09 -0.79 9.40 -39.21 -0.37 -1.16 16 5 C -0.14 -1.25 10.03 -39.61 -0.40 -1.65 16 6 C -0.09 -0.94 10.03 -39.54 -0.40 -1.33 16 7 C -0.14 -1.68 8.75 -39.44 -0.35 -2.03 16 8 C 0.19 2.07 6.49 -83.39 -0.54 1.53 16 9 N -0.68 -6.79 5.22 -14.01 -0.07 -6.86 16 10 C 0.70 9.25 8.13 -86.91 -0.71 8.55 16 11 O -0.55 -9.25 11.01 5.29 0.06 -9.19 16 12 N -0.67 -8.17 5.35 -14.22 -0.08 -8.24 16 13 C 0.12 1.89 6.28 -83.69 -0.53 1.37 16 14 C -0.14 -2.26 9.96 -39.39 -0.39 -2.65 16 15 C -0.11 -2.03 9.69 -39.61 -0.38 -2.42 16 16 C -0.04 -0.90 5.07 -104.59 -0.53 -1.43 16 17 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 18 C -0.51 -14.24 9.09 -34.44 -0.31 -14.56 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.11 -2.16 9.69 -39.61 -0.38 -2.54 16 27 C -0.12 -2.12 8.65 -39.39 -0.34 -2.46 16 28 H 0.10 0.54 6.04 -52.49 -0.32 0.22 16 29 H 0.10 0.47 8.06 -52.48 -0.42 0.05 16 30 H 0.11 0.64 6.62 -52.49 -0.35 0.29 16 31 H 0.13 0.78 6.17 -52.49 -0.32 0.46 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.16 2.24 5.52 -52.49 -0.29 1.95 16 35 H 0.41 2.67 7.04 -40.82 -0.29 2.38 16 36 H 0.40 3.29 8.85 -40.82 -0.36 2.93 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 43 H 0.12 2.28 6.42 -52.49 -0.34 1.95 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.96 364.35 -10.50 -43.46 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.18 Total: 6.17 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -6.44 Total: -21.63 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.59 Total: -40.78 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.96 -10.50 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673804445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.366 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds