Wall clock time and date at job start Sat Apr 11 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32627 * 1 3 3 C 1.47698 * 120.00015 * 2 1 4 4 C 1.39500 * 120.18194 * 0.25288 * 3 2 1 5 5 C 1.37958 * 119.92487 * 180.32442 * 4 3 2 6 6 C 1.38433 * 120.29251 * 359.67000 * 5 4 3 7 7 C 1.38159 * 120.36582 * 0.02745 * 6 5 4 8 8 C 1.38701 * 120.06559 * 0.02562 * 7 6 5 9 9 N 1.39704 * 120.14695 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99634 * 21.30188 * 9 8 7 11 11 O 1.21588 * 120.00362 * 5.41328 * 10 9 8 12 12 N 1.34779 * 119.99558 * 185.41852 * 10 9 8 13 13 C 1.39939 * 119.99661 * 185.38763 * 12 10 9 14 14 C 1.38870 * 120.07054 * 213.36530 * 13 12 10 15 15 C 1.38116 * 119.92809 * 180.27586 * 14 13 12 16 16 C 1.38278 * 120.06845 * 359.47237 * 15 14 13 17 17 C 1.50697 * 119.92920 * 180.27222 * 16 15 14 18 18 C 1.50698 * 109.47707 * 270.27682 * 17 16 15 19 19 H 1.08003 * 119.99215 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00586 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99597 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47036 * 90.00012 * 22 20 18 24 24 H 1.48497 * 109.47069 * 209.99402 * 22 20 18 25 25 H 1.48493 * 109.47295 * 329.99905 * 22 20 18 26 26 C 1.38283 * 120.14234 * 0.55420 * 16 15 14 27 27 C 1.38109 * 120.06991 * 359.69640 * 26 16 15 28 28 H 1.07999 * 120.00662 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.00413 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99751 * 179.97438 * 2 1 3 31 31 H 1.07998 * 120.03284 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.85016 * 179.70414 * 5 4 3 33 33 H 1.07997 * 119.81619 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.96479 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00632 * 201.30909 * 9 8 7 36 36 H 0.96997 * 120.00512 * 5.38609 * 12 10 9 37 37 H 1.07997 * 120.03324 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.96330 * 179.72129 * 15 14 13 39 39 H 1.09003 * 109.47213 * 30.27963 * 17 16 15 40 40 H 1.09005 * 109.47104 * 150.27696 * 17 16 15 41 41 H 0.97001 * 120.00038 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.96274 * 179.72933 * 26 16 15 43 43 H 1.07998 * 120.03733 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3263 0.0000 0.0000 3 6 2.0648 1.2791 0.0000 4 6 1.3711 2.4894 0.0053 5 6 2.0662 3.6811 -0.0015 6 6 3.4505 3.6819 -0.0067 7 6 4.1497 2.4903 -0.0057 8 6 3.4661 1.2835 0.0000 9 7 4.1714 0.0776 0.0005 10 6 5.4519 0.0461 0.4198 11 8 5.9626 1.0445 0.8895 12 7 6.1663 -1.0923 0.3183 13 6 7.4568 -1.1586 0.8553 14 6 8.4286 -1.9347 0.2374 15 6 9.6998 -2.0026 0.7731 16 6 10.0084 -1.2901 1.9173 17 6 11.3981 -1.3615 2.4957 18 6 11.4748 -2.5002 3.4799 19 1 10.6041 -3.1108 3.6680 20 6 12.6562 -2.7618 4.1408 21 7 13.7163 -2.0179 3.9120 22 14 12.7510 -4.1728 5.3612 23 1 13.1612 -5.4125 4.6537 24 1 13.7478 -3.8508 6.4137 25 1 11.4196 -4.3771 5.9862 26 6 9.0428 -0.5167 2.5353 27 6 7.7684 -0.4488 2.0075 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8662 -0.9353 0.0004 31 1 0.2912 2.4935 0.0090 32 1 1.5280 4.6174 -0.0022 33 1 3.9869 4.6193 -0.0116 34 1 5.2297 2.4986 -0.0102 35 1 3.7396 -0.7370 -0.3011 36 1 5.7860 -1.8656 -0.1269 37 1 8.1892 -2.4885 -0.6583 38 1 10.4547 -2.6095 0.2956 39 1 12.1176 -1.5256 1.6935 40 1 11.6285 -0.4254 3.0045 41 1 14.5476 -2.2021 4.3767 42 1 9.2858 0.0352 3.4314 43 1 7.0146 0.1551 2.4908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673804445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:12 Heat of formation + Delta-G solvation = 30.527510 kcal Electronic energy + Delta-G solvation = -24967.789577 eV Core-core repulsion = 21363.620587 eV Total energy + Delta-G solvation = -3604.168991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21137 -40.52580 -39.42789 -36.46846 -36.03586 -35.02759 -34.97673 -32.33852 -31.78414 -30.68118 -30.00975 -28.28330 -25.40062 -24.76883 -23.98374 -23.54730 -22.15571 -21.62230 -20.69091 -19.68233 -19.18704 -18.50096 -18.02413 -16.94695 -16.89885 -16.68845 -16.26925 -15.94700 -15.72241 -15.46372 -14.98633 -14.86076 -14.54049 -14.51949 -14.30803 -14.14046 -14.00426 -13.67570 -13.29546 -13.17851 -13.05568 -12.61066 -12.47792 -12.32016 -12.01735 -11.92512 -11.69970 -11.68261 -11.50404 -11.32203 -11.20005 -10.81338 -10.59545 -9.77334 -9.45461 -8.98306 -8.70450 -8.17590 -6.32312 -0.02109 0.36418 0.51945 0.56659 1.33500 1.40156 1.41563 1.52946 1.66530 1.89682 2.40580 2.95434 2.97566 3.03554 3.11542 3.79204 3.88646 4.02244 4.11335 4.13858 4.31719 4.38073 4.43683 4.47573 4.55724 4.58945 4.65590 4.70945 4.96007 5.00425 5.11913 5.20762 5.30867 5.34736 5.35176 5.41047 5.44816 5.46266 5.59573 5.64421 5.67758 5.76338 5.79771 5.92779 6.08401 6.09486 6.11892 6.24786 6.77791 6.80454 7.26917 7.36035 8.90335 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002154 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.528399 B =12994.144301 C =13350.272899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C -0.097 4.097 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.108 4.108 7 C -0.163 4.163 8 C 0.160 3.840 9 N -0.660 5.660 10 C 0.698 3.302 11 O -0.589 6.589 12 N -0.659 5.659 13 C 0.137 3.863 14 C -0.125 4.125 15 C -0.111 4.111 16 C -0.074 4.074 17 C 0.057 3.943 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.267 1.267 26 C -0.119 4.119 27 C -0.122 4.122 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.424 0.576 36 H 0.426 0.574 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.007 0.993 40 H -0.002 1.002 41 H 0.265 0.735 42 H 0.109 0.891 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.971 3.596 -12.562 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.100 4.100 4 C -0.116 4.116 5 C -0.159 4.159 6 C -0.127 4.127 7 C -0.184 4.184 8 C 0.065 3.935 9 N -0.308 5.308 10 C 0.399 3.601 11 O -0.466 6.466 12 N -0.308 5.308 13 C 0.042 3.958 14 C -0.145 4.145 15 C -0.130 4.130 16 C -0.075 4.075 17 C 0.020 3.980 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.791 3.209 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.191 1.191 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.263 0.737 36 H 0.266 0.734 37 H 0.179 0.821 38 H 0.146 0.854 39 H 0.026 0.974 40 H 0.017 0.983 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -29.346 4.434 -12.122 32.059 hybrid contribution 0.654 -1.056 0.584 1.373 sum -28.692 3.378 -11.537 31.109 Atomic orbital electron populations 1.24608 0.94982 1.03672 0.96503 1.21656 0.95972 0.94827 1.03378 1.18971 0.89917 0.95573 1.05508 1.21443 1.00998 0.90695 0.98480 1.21366 0.93765 0.99278 1.01475 1.21356 0.95108 0.97655 0.98549 1.21573 1.01630 0.91959 1.03200 1.17740 0.90530 0.84887 1.00388 1.42302 1.10447 1.11124 1.66884 1.16048 0.81491 0.83575 0.78935 1.90910 1.70748 1.34330 1.50649 1.42216 1.13870 1.14559 1.60184 1.17297 0.84363 1.00669 0.93431 1.20995 0.91081 1.01723 1.00703 1.20974 0.96985 0.99275 0.95766 1.20408 0.96813 0.95213 0.95054 1.18094 0.89117 0.95960 0.94862 1.21382 0.96787 1.14582 1.23630 0.92577 1.25960 0.95260 0.99414 0.99001 1.70090 1.02143 1.40873 1.44002 0.85418 0.78105 0.79021 0.78348 1.19393 1.20675 1.19106 1.20896 0.93052 0.99895 0.99931 1.20978 0.96643 1.01061 0.95555 0.87071 0.85940 0.85814 0.82832 0.83351 0.84802 0.85346 0.73687 0.73447 0.82133 0.85384 0.97423 0.98330 0.92611 0.87305 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 14.15 66.66 0.94 -0.33 16 2 C -0.14 -1.62 9.54 23.61 0.23 -1.40 16 3 C -0.10 -1.63 5.88 -20.01 -0.12 -1.75 16 4 C -0.10 -1.42 9.40 22.51 0.21 -1.20 16 5 C -0.14 -2.15 10.03 22.25 0.22 -1.93 16 6 C -0.11 -2.17 10.03 22.30 0.22 -1.94 16 7 C -0.16 -4.10 8.75 22.36 0.20 -3.91 16 8 C 0.16 3.46 6.49 38.46 0.25 3.71 16 9 N -0.66 -12.28 5.22 -316.50 -1.65 -13.94 16 10 C 0.70 17.85 8.13 179.05 1.46 19.30 16 11 O -0.59 -20.33 11.01 -3.99 -0.04 -20.38 16 12 N -0.66 -14.47 5.35 -317.17 -1.70 -16.17 16 13 C 0.14 4.17 6.28 38.15 0.24 4.41 16 14 C -0.12 -3.66 9.96 22.39 0.22 -3.44 16 15 C -0.11 -4.20 9.69 22.25 0.22 -3.98 16 16 C -0.07 -3.37 5.07 -19.85 -0.10 -3.47 16 17 C 0.06 3.10 5.10 29.10 0.15 3.25 16 18 C -0.53 -30.39 9.09 25.60 0.23 -30.16 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 20 C 0.00 0.09 5.46 84.65 0.46 0.55 16 21 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 22 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C -0.12 -5.09 9.69 22.25 0.22 -4.87 16 27 C -0.12 -4.54 8.65 22.39 0.19 -4.35 16 28 H 0.11 0.67 6.04 -2.91 -0.02 0.66 16 29 H 0.12 0.56 8.06 -2.91 -0.02 0.53 16 30 H 0.12 1.02 6.62 -2.91 -0.02 1.01 16 31 H 0.15 1.30 6.17 -2.91 -0.02 1.28 16 32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.13 3.95 5.52 -2.91 -0.02 3.94 16 35 H 0.42 4.50 7.04 -92.71 -0.65 3.85 16 36 H 0.43 5.37 8.85 -92.71 -0.82 4.55 16 37 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 40 H 0.00 -0.10 8.08 -2.38 -0.02 -0.12 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.12 4.60 6.42 -2.91 -0.02 4.58 16 Total: -1.00 -75.74 364.35 3.95 -71.80 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.41 Total: 20.07 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 5.44 Total: -31.50 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -3.06 Total: -86.68 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.04 Total: -20.38 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -75.74 3.95 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673804445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.326 kcal (2) G-P(sol) polarization free energy of solvation -75.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds