Wall clock time and date at job start Sat Apr 11 2020 00:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46994 * 2 1 4 4 C 1.50694 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.37479 * 122.45447 * 265.25177 * 4 3 2 6 6 C 1.36644 * 113.29744 * 180.22236 * 5 4 3 7 7 C 1.46588 * 125.45827 * 179.83569 * 6 5 4 8 8 O 1.21702 * 119.99709 * 359.72329 * 7 6 5 9 9 N 1.34777 * 119.99959 * 179.71743 * 7 6 5 10 10 C 1.46497 * 119.99614 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46908 * 180.02562 * 10 9 7 12 12 C 1.30998 * 120.00172 * 127.15413 * 11 10 9 13 13 C 1.50706 * 119.99851 * 7.56082 * 12 11 10 14 14 N 1.46505 * 109.47082 * 127.00695 * 13 12 11 15 15 C 1.36933 * 119.99981 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99704 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00063 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99850 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00031 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46978 * 90.00309 * 19 17 15 21 21 H 1.48498 * 109.47004 * 209.99843 * 19 17 15 22 22 H 1.48495 * 109.47081 * 330.00215 * 19 17 15 23 23 S 1.75835 * 109.08286 * 359.57332 * 6 5 4 24 24 C 1.33822 * 122.44624 * 85.00022 * 4 3 2 25 25 C 1.50693 * 124.52391 * 0.02562 * 24 4 3 26 26 H 1.09004 * 109.46739 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47176 * 299.99810 * 1 2 3 28 28 H 1.09001 * 109.46847 * 60.00327 * 1 2 3 29 29 H 1.08999 * 109.47563 * 240.00284 * 2 1 3 30 30 H 1.09001 * 109.47357 * 119.99806 * 2 1 3 31 31 H 1.09005 * 109.46651 * 60.00229 * 3 2 1 32 32 H 1.08996 * 109.47570 * 300.00280 * 3 2 1 33 33 H 1.08003 * 123.34703 * 0.03722 * 5 4 3 34 34 H 0.96999 * 119.99946 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47453 * 59.99994 * 10 9 7 36 36 H 1.09000 * 109.47088 * 299.99931 * 10 9 7 37 37 H 1.08002 * 119.99826 * 307.15542 * 11 10 9 38 38 H 1.08003 * 120.00422 * 187.55799 * 12 11 10 39 39 H 1.09005 * 109.46806 * 247.00121 * 13 12 11 40 40 H 1.08992 * 109.47230 * 7.00354 * 13 12 11 41 41 H 0.96997 * 119.99827 * 359.97438 * 14 13 12 42 42 H 0.96997 * 119.99869 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47135 * 179.97438 * 25 24 4 44 44 H 1.09003 * 109.47093 * 299.99588 * 25 24 4 45 45 H 1.08996 * 109.47461 * 59.99358 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2842 1.5389 1.1570 6 6 5.6333 1.5258 0.9405 7 6 6.6624 1.6170 1.9804 8 8 6.3389 1.7191 3.1492 9 7 7.9667 1.5878 1.6422 10 6 8.9951 1.6784 2.6816 11 6 10.3596 1.6237 2.0442 12 6 11.2431 2.5545 2.3071 13 6 10.9605 3.5822 3.3726 14 7 12.0719 3.6148 4.3266 15 6 12.0372 4.4781 5.3890 16 1 11.1906 5.1353 5.5233 17 6 13.0899 4.5086 6.2932 18 7 13.0562 5.3381 7.3146 19 14 14.5536 3.3715 6.0612 20 1 15.5782 4.0478 5.2256 21 1 15.1364 3.0385 7.3858 22 1 14.1099 2.1246 5.3879 23 16 5.9372 1.3745 -0.7848 24 6 4.2654 1.3441 -1.1241 25 6 3.6764 1.2235 -2.5059 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.8411 1.6200 2.1386 34 1 8.2244 1.5067 0.7106 35 1 8.8844 0.8455 3.3758 36 1 8.8841 2.6187 3.2215 37 1 10.6091 0.8172 1.3706 38 1 12.1740 2.5854 1.7604 39 1 10.8494 4.5633 2.9106 40 1 10.0406 3.3203 3.8951 41 1 12.8319 3.0244 4.2061 42 1 13.7920 5.3597 7.9463 43 1 4.4804 1.1596 -3.2392 44 1 3.0612 0.3255 -2.5616 45 1 3.0617 2.0986 -2.7165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699340765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:16 Heat of formation + Delta-G solvation = 12.386664 kcal Electronic energy + Delta-G solvation = -23250.440661 eV Core-core repulsion = 19780.928975 eV Total energy + Delta-G solvation = -3469.511686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94949 -38.89868 -36.70094 -34.68412 -34.54622 -32.95488 -32.31284 -30.86273 -29.03710 -27.34886 -25.92739 -24.95044 -23.50605 -22.14742 -22.05940 -20.69275 -19.45330 -18.66791 -18.12450 -17.32409 -16.52791 -16.16938 -15.65137 -15.18644 -15.09482 -14.78643 -14.48918 -14.32982 -13.85054 -13.77956 -13.71227 -13.43035 -13.14179 -13.10250 -12.78001 -12.65266 -12.50799 -12.27045 -12.18172 -11.97333 -11.75177 -11.52212 -11.23090 -11.13774 -10.98031 -10.86063 -10.54370 -10.22038 -10.11625 -9.59460 -9.33565 -9.12374 -8.93069 -8.74216 -8.64203 -7.22204 -5.75960 -3.12318 0.22740 1.14272 1.54397 2.05307 2.11095 3.09171 3.22745 3.38372 3.40868 3.46125 4.34533 4.44571 4.57671 4.59805 4.68226 4.73528 4.77488 4.91899 5.00212 5.09156 5.16589 5.18640 5.21902 5.38768 5.41821 5.46757 5.51931 5.55432 5.57259 5.63102 5.67155 5.70004 5.78918 5.89813 6.01306 6.06454 6.14554 6.19348 6.42579 6.46276 6.74978 7.00509 7.35313 7.99610 8.06631 8.42525 9.20915 9.92761 10.12288 11.42200 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.001964 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.064730 B =14252.993751 C =14835.734495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.059 4.059 4 C -0.120 4.120 5 C -0.046 4.046 6 C -0.262 4.262 7 C 0.587 3.413 8 O -0.525 6.525 9 N -0.720 5.720 10 C 0.140 3.860 11 C -0.195 4.195 12 C -0.116 4.116 13 C 0.165 3.835 14 N -0.751 5.751 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 S 0.193 5.807 24 C -0.196 4.196 25 C -0.083 4.083 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.396 0.604 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.710 -12.625 -24.581 35.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.098 4.098 4 C -0.132 4.132 5 C -0.079 4.079 6 C -0.382 4.382 7 C 0.372 3.628 8 O -0.403 6.403 9 N -0.371 5.371 10 C 0.018 3.982 11 C -0.214 4.214 12 C -0.135 4.135 13 C 0.039 3.961 14 N -0.396 5.396 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 S 0.463 5.537 24 C -0.315 4.315 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.230 0.770 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.652 -12.439 -24.445 34.944 hybrid contribution 0.103 -0.768 0.337 0.846 sum -21.549 -13.208 -24.108 34.928 Atomic orbital electron populations 1.21786 0.95583 1.01752 1.01904 1.21497 0.95657 0.96131 1.02422 1.20333 0.89000 0.97453 1.03044 1.18638 0.97501 1.05814 0.91294 1.20636 0.90943 0.96428 0.99891 1.24518 0.98026 1.18747 0.96950 1.16945 0.81629 0.76860 0.87354 1.90870 1.81544 1.49490 1.18382 1.45881 1.05297 1.75050 1.10853 1.20624 0.84002 1.04082 0.89482 1.22627 0.95251 0.99516 1.04052 1.23326 0.98871 0.94958 0.96390 1.19988 0.92259 0.95177 0.88681 1.42611 1.20503 1.47102 1.29419 1.19072 1.04954 1.13268 1.00311 0.89094 1.24678 0.98292 0.99044 0.97088 1.69706 1.33023 1.39757 1.15529 0.86523 0.83720 0.81075 0.77087 1.21059 1.21657 1.20296 1.82924 1.03562 1.68222 0.99027 1.24000 0.98241 1.08915 1.00363 1.20371 1.00845 1.03170 0.89735 0.92673 0.92552 0.92743 0.91993 0.91718 0.90748 0.90919 0.82973 0.77042 0.90646 0.88869 0.86890 0.86803 0.94462 0.93871 0.80546 0.93012 0.91351 0.90295 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 3 C -0.06 -0.37 5.11 -27.88 -0.14 -0.51 16 4 C -0.12 -1.00 5.04 -106.45 -0.54 -1.54 16 5 C -0.05 -0.49 9.78 -40.43 -0.40 -0.88 16 6 C -0.26 -2.98 6.45 -36.79 -0.24 -3.22 16 7 C 0.59 8.30 7.78 -12.89 -0.10 8.20 16 8 O -0.53 -9.52 16.84 5.19 0.09 -9.43 16 9 N -0.72 -8.84 5.54 -62.83 -0.35 -9.19 16 10 C 0.14 1.97 5.76 -5.19 -0.03 1.94 16 11 C -0.20 -2.51 9.63 -36.02 -0.35 -2.86 16 12 C -0.12 -1.75 9.63 -36.02 -0.35 -2.10 16 13 C 0.17 3.24 6.35 -5.19 -0.03 3.21 16 14 N -0.75 -18.26 5.40 -61.08 -0.33 -18.59 16 15 C -0.25 -7.16 10.47 -15.06 -0.16 -7.31 16 16 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 17 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.77 13.97 55.49 0.78 -28.99 16 19 Si 0.89 22.38 27.74 -169.99 -4.71 17.66 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 23 S 0.19 1.56 22.08 -107.50 -2.37 -0.81 16 24 C -0.20 -1.48 6.28 -35.86 -0.23 -1.70 16 25 C -0.08 -0.40 9.44 36.00 0.34 -0.06 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.34 7.41 -51.93 -0.38 -0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 32 H 0.07 0.38 7.45 -51.93 -0.39 0.00 16 33 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.40 3.78 7.58 -40.82 -0.31 3.47 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.52 5.30 -51.93 -0.28 1.25 16 37 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.87 5.29 -51.93 -0.27 0.60 16 41 H 0.36 8.52 5.52 -40.82 -0.23 8.29 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 44 H 0.08 0.31 7.41 -51.93 -0.38 -0.07 16 45 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -34.52 384.83 -10.09 -44.62 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.89 Total: 6.92 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.10 Total: -7.99 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.10 Total: -56.77 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.66 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.37 Total: -0.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.52 -10.09 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699340765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.003 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds