Wall clock time and date at job start Sat Apr 11 2020 00:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46994 * 2 1 4 4 C 1.50694 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.37479 * 122.45447 * 265.25177 * 4 3 2 6 6 C 1.36644 * 113.29744 * 180.22236 * 5 4 3 7 7 C 1.46588 * 125.45827 * 179.83569 * 6 5 4 8 8 O 1.21702 * 119.99709 * 359.72329 * 7 6 5 9 9 N 1.34777 * 119.99959 * 179.71743 * 7 6 5 10 10 C 1.46497 * 119.99614 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46908 * 180.02562 * 10 9 7 12 12 C 1.30998 * 120.00172 * 127.15413 * 11 10 9 13 13 C 1.50706 * 119.99851 * 7.56082 * 12 11 10 14 14 N 1.46505 * 109.47082 * 127.00695 * 13 12 11 15 15 C 1.36933 * 119.99981 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99704 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00063 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99850 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00031 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46978 * 90.00309 * 19 17 15 21 21 H 1.48498 * 109.47004 * 209.99843 * 19 17 15 22 22 H 1.48495 * 109.47081 * 330.00215 * 19 17 15 23 23 S 1.75835 * 109.08286 * 359.57332 * 6 5 4 24 24 C 1.33822 * 122.44624 * 85.00022 * 4 3 2 25 25 C 1.50693 * 124.52391 * 0.02562 * 24 4 3 26 26 H 1.09004 * 109.46739 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47176 * 299.99810 * 1 2 3 28 28 H 1.09001 * 109.46847 * 60.00327 * 1 2 3 29 29 H 1.08999 * 109.47563 * 240.00284 * 2 1 3 30 30 H 1.09001 * 109.47357 * 119.99806 * 2 1 3 31 31 H 1.09005 * 109.46651 * 60.00229 * 3 2 1 32 32 H 1.08996 * 109.47570 * 300.00280 * 3 2 1 33 33 H 1.08003 * 123.34703 * 0.03722 * 5 4 3 34 34 H 0.96999 * 119.99946 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47453 * 59.99994 * 10 9 7 36 36 H 1.09000 * 109.47088 * 299.99931 * 10 9 7 37 37 H 1.08002 * 119.99826 * 307.15542 * 11 10 9 38 38 H 1.08003 * 120.00422 * 187.55799 * 12 11 10 39 39 H 1.09005 * 109.46806 * 247.00121 * 13 12 11 40 40 H 1.08992 * 109.47230 * 7.00354 * 13 12 11 41 41 H 0.96997 * 119.99827 * 359.97438 * 14 13 12 42 42 H 0.96997 * 119.99869 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47135 * 179.97438 * 25 24 4 44 44 H 1.09003 * 109.47093 * 299.99588 * 25 24 4 45 45 H 1.08996 * 109.47461 * 59.99358 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2842 1.5389 1.1570 6 6 5.6333 1.5258 0.9405 7 6 6.6624 1.6170 1.9804 8 8 6.3389 1.7191 3.1492 9 7 7.9667 1.5878 1.6422 10 6 8.9951 1.6784 2.6816 11 6 10.3596 1.6237 2.0442 12 6 11.2431 2.5545 2.3071 13 6 10.9605 3.5822 3.3726 14 7 12.0719 3.6148 4.3266 15 6 12.0372 4.4781 5.3890 16 1 11.1906 5.1353 5.5233 17 6 13.0899 4.5086 6.2932 18 7 13.0562 5.3381 7.3146 19 14 14.5536 3.3715 6.0612 20 1 15.5782 4.0478 5.2256 21 1 15.1364 3.0385 7.3858 22 1 14.1099 2.1246 5.3879 23 16 5.9372 1.3745 -0.7848 24 6 4.2654 1.3441 -1.1241 25 6 3.6764 1.2235 -2.5059 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.8411 1.6200 2.1386 34 1 8.2244 1.5067 0.7106 35 1 8.8844 0.8455 3.3758 36 1 8.8841 2.6187 3.2215 37 1 10.6091 0.8172 1.3706 38 1 12.1740 2.5854 1.7604 39 1 10.8494 4.5633 2.9106 40 1 10.0406 3.3203 3.8951 41 1 12.8319 3.0244 4.2061 42 1 13.7920 5.3597 7.9463 43 1 4.4804 1.1596 -3.2392 44 1 3.0612 0.3255 -2.5616 45 1 3.0617 2.0986 -2.7165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699340765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:15 Heat of formation + Delta-G solvation = -10.066120 kcal Electronic energy + Delta-G solvation = -23251.414286 eV Core-core repulsion = 19780.928975 eV Total energy + Delta-G solvation = -3470.485311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97594 -39.65543 -38.08965 -36.24668 -35.11570 -34.51421 -33.09667 -32.68925 -29.69932 -28.50297 -27.13974 -25.97966 -24.27524 -24.06173 -22.71980 -21.65438 -20.63295 -19.86567 -19.19094 -18.67664 -17.66985 -17.15177 -16.78518 -16.48830 -16.13569 -15.67892 -15.52262 -15.50187 -15.07722 -14.91575 -14.65340 -14.37026 -14.33282 -14.20211 -13.88310 -13.67577 -13.55546 -13.08147 -12.97219 -12.84320 -12.75763 -12.72135 -12.36484 -12.21818 -11.99350 -11.89476 -11.72137 -11.67682 -11.46456 -11.35777 -11.07475 -10.49671 -10.08676 -9.63241 -9.35762 -9.28467 -8.05793 -5.41097 -0.55096 0.43729 0.84524 0.96798 1.28691 1.36780 1.41843 1.49455 2.08078 2.18970 2.46876 3.25052 3.65484 3.75700 3.81016 3.82945 4.02820 4.06804 4.09664 4.26624 4.27227 4.30248 4.51933 4.53105 4.65138 4.70194 4.74985 4.78588 4.86852 4.91087 4.96147 5.00323 5.03298 5.09669 5.17935 5.21564 5.22279 5.41393 5.49200 5.50822 5.54766 5.68460 5.81850 6.17598 6.35216 7.02080 7.04005 7.77606 7.99742 9.15665 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.001964 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.064730 B =14252.993751 C =14835.734495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.056 4.056 4 C -0.134 4.134 5 C -0.050 4.050 6 C -0.303 4.303 7 C 0.583 3.417 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.137 3.863 11 C -0.158 4.158 12 C -0.133 4.133 13 C 0.160 3.840 14 N -0.752 5.752 15 C -0.244 4.244 16 H 0.051 0.949 17 C -0.066 4.066 18 N -0.984 5.984 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.295 1.295 22 H -0.249 1.249 23 S 0.243 5.757 24 C -0.184 4.184 25 C -0.086 4.086 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.369 0.631 42 H 0.260 0.740 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.446 -14.964 -28.708 39.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.095 4.095 4 C -0.146 4.146 5 C -0.085 4.085 6 C -0.423 4.423 7 C 0.371 3.629 8 O -0.461 6.461 9 N -0.357 5.357 10 C 0.014 3.986 11 C -0.177 4.177 12 C -0.152 4.152 13 C 0.035 3.965 14 N -0.398 5.398 15 C -0.375 4.375 16 H 0.069 0.931 17 C -0.257 4.257 18 N -0.633 5.633 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.221 1.221 22 H -0.174 1.174 23 S 0.512 5.488 24 C -0.304 4.304 25 C -0.144 4.144 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.249 0.751 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.203 0.797 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.396 -14.800 -28.662 38.708 hybrid contribution -0.183 -0.004 1.535 1.546 sum -21.578 -14.804 -27.127 37.691 Atomic orbital electron populations 1.21772 0.94784 1.02051 1.02251 1.21467 0.96310 0.95632 1.02009 1.20361 0.87633 0.97939 1.03602 1.18740 0.98559 1.06604 0.90693 1.20757 0.91209 0.96146 1.00345 1.24327 0.97477 1.21746 0.98708 1.17392 0.82468 0.75720 0.87324 1.90830 1.82400 1.52106 1.20775 1.45679 1.04469 1.74276 1.11309 1.20491 0.85650 1.02305 0.90116 1.22822 0.93183 0.99087 1.02603 1.23092 1.00934 0.94682 0.96488 1.20074 0.90481 0.96728 0.89228 1.42574 1.22075 1.46249 1.28933 1.19033 1.03590 1.13182 1.01691 0.93104 1.25623 1.02004 1.01299 0.96778 1.69907 1.34326 1.42181 1.16934 0.85287 0.79108 0.79574 0.77070 1.19848 1.22126 1.17352 1.82640 1.03678 1.67022 0.95427 1.24502 0.98105 1.06269 1.01558 1.20555 1.01608 1.04420 0.87845 0.92417 0.92940 0.91677 0.91259 0.93272 0.91318 0.89234 0.84460 0.75122 0.91371 0.91812 0.82597 0.84321 0.95231 0.94961 0.79690 0.93176 0.90032 0.88893 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.19 5.92 30.60 0.18 -1.01 16 3 C -0.06 -0.63 5.11 29.85 0.15 -0.48 16 4 C -0.13 -2.10 5.04 -21.05 -0.11 -2.21 16 5 C -0.05 -1.09 9.78 21.72 0.21 -0.88 16 6 C -0.30 -6.90 6.45 24.08 0.16 -6.75 16 7 C 0.58 17.07 7.78 86.42 0.67 17.74 16 8 O -0.58 -22.50 16.84 -4.36 -0.07 -22.57 16 9 N -0.71 -16.94 5.54 -470.92 -2.61 -19.55 16 10 C 0.14 3.83 5.76 85.63 0.49 4.32 16 11 C -0.16 -3.59 9.63 25.65 0.25 -3.35 16 12 C -0.13 -3.69 9.63 25.65 0.25 -3.44 16 13 C 0.16 6.34 6.35 85.63 0.54 6.88 16 14 N -0.75 -36.49 5.40 -347.16 -1.87 -38.37 16 15 C -0.24 -14.62 10.47 84.03 0.88 -13.74 16 16 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 17 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 18 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 19 Si 0.96 46.11 27.74 68.60 1.90 48.01 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 22 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 23 S 0.24 3.38 22.08 -56.49 -1.25 2.13 16 24 C -0.18 -2.32 6.28 24.68 0.15 -2.16 16 25 C -0.09 -0.49 9.44 71.23 0.67 0.18 16 26 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.60 7.41 -2.39 -0.02 0.59 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.85 8.11 -2.38 -0.02 0.83 16 32 H 0.09 0.71 7.45 -2.39 -0.02 0.69 16 33 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.41 7.01 7.58 -92.71 -0.70 6.31 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.19 5.30 -2.39 -0.01 2.18 16 37 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.03 1.37 5.29 -2.39 -0.01 1.36 16 41 H 0.37 16.65 5.52 -92.71 -0.51 16.13 16 42 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 43 H 0.08 0.30 8.11 -2.39 -0.02 0.28 16 44 H 0.09 0.35 7.41 -2.39 -0.02 0.34 16 45 H 0.09 0.37 7.92 -2.39 -0.02 0.35 16 Total: -1.00 -79.33 384.83 1.82 -77.52 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.27 Total: 26.31 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.69 Total: -8.93 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -4.18 Total: -122.46 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.57 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.25 Total: 2.13 kcal Total: -79.33 1.82 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699340765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.451 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds