Wall clock time and date at job start Sat Apr 11 2020 00:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00050 * 2 1 4 4 C 1.53008 * 109.47238 * 173.99525 * 3 2 1 5 5 C 1.50703 * 109.47200 * 53.99488 * 3 2 1 6 6 O 1.21278 * 119.99725 * 214.99699 * 5 3 2 7 7 N 1.34778 * 119.99705 * 35.00111 * 5 3 2 8 8 C 1.46496 * 119.99881 * 180.02562 * 7 5 3 9 9 C 1.53948 * 113.74249 * 106.25639 * 8 7 5 10 10 N 1.47805 * 86.03521 * 90.88255 * 9 8 7 11 11 C 1.36939 * 134.45615 * 204.64040 * 10 9 8 12 12 H 1.08003 * 120.00223 * 179.86564 * 11 10 9 13 13 C 1.38817 * 120.00019 * 359.87329 * 11 10 9 14 14 N 1.31615 * 119.99495 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47450 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46700 * 120.00307 * 15 13 11 18 18 H 1.48502 * 109.47437 * 239.99761 * 15 13 11 19 19 C 1.47581 * 91.05157 * 24.55089 * 10 9 8 20 20 C 1.50702 * 109.47028 * 293.99361 * 3 2 1 21 21 C 1.38214 * 120.01550 * 357.95177 * 20 3 2 22 22 C 1.38230 * 120.02485 * 179.71925 * 21 20 3 23 23 C 1.38267 * 120.05153 * 0.55641 * 22 21 20 24 24 C 1.38177 * 120.02400 * 359.72065 * 23 22 21 25 25 C 1.38438 * 120.01170 * 178.22587 * 20 3 2 26 26 F 1.35108 * 120.02778 * 359.97438 * 25 20 3 27 27 H 1.09006 * 109.47287 * 171.21265 * 1 2 3 28 28 H 1.09002 * 109.46842 * 291.20552 * 1 2 3 29 29 H 1.08998 * 109.47457 * 51.21351 * 1 2 3 30 30 H 1.09005 * 109.46740 * 300.00396 * 4 3 2 31 31 H 1.08999 * 109.47262 * 59.99923 * 4 3 2 32 32 H 1.08994 * 109.47113 * 180.02562 * 4 3 2 33 33 H 0.97003 * 120.00121 * 359.97438 * 7 5 3 34 34 H 1.09000 * 112.94111 * 334.66903 * 8 7 5 35 35 H 1.09004 * 113.77063 * 205.15027 * 9 8 7 36 36 H 1.09001 * 113.76662 * 336.54419 * 9 8 7 37 37 H 0.97007 * 119.99572 * 180.02562 * 14 13 11 38 38 H 1.08998 * 113.76587 * 221.14961 * 19 10 9 39 39 H 1.08998 * 113.76837 * 89.75227 * 19 10 9 40 40 H 1.08003 * 119.98317 * 0.02562 * 21 20 3 41 41 H 1.07999 * 119.97233 * 180.25436 * 22 21 20 42 42 H 1.07989 * 119.98696 * 179.74384 * 23 22 21 43 43 H 1.07996 * 120.01230 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5283 1.1878 0.1509 5 6 1.4515 2.1041 1.1494 6 8 1.2655 3.2961 1.0257 7 7 1.1587 1.4936 2.3148 8 6 0.6150 2.2698 3.4319 9 6 -0.8847 2.0288 3.6823 10 7 -0.4536 0.9602 4.6080 11 6 -1.0314 -0.1857 5.0856 12 1 -0.4890 -0.8182 5.7728 13 6 -2.3144 -0.5346 4.6865 14 7 -2.9755 0.2364 3.8494 15 14 -3.1023 -2.0981 5.3376 16 1 -2.1582 -2.7824 6.2571 17 1 -4.3473 -1.7563 6.0715 18 1 -3.4282 -2.9981 4.2022 19 6 0.8499 1.6226 4.8087 20 6 1.6867 1.9993 -1.2981 21 6 0.9672 1.3376 -2.2752 22 6 0.6654 1.9758 -3.4636 23 6 1.0926 3.2728 -3.6809 24 6 1.8169 3.9343 -2.7078 25 6 2.1149 3.2979 -1.5145 26 9 2.8226 3.9440 -0.5621 27 1 -0.3634 -1.0156 -0.1570 28 1 -0.3633 0.3717 0.9581 29 1 -0.3634 0.6437 -0.8010 30 1 3.7622 0.6858 1.0898 31 1 3.9324 0.6102 -0.6804 32 1 3.9715 2.1836 0.1514 33 1 1.3072 0.5401 2.4135 34 1 0.8891 3.3239 3.3900 35 1 -1.3871 2.8611 4.1755 36 1 -1.4230 1.6634 2.8078 37 1 -3.8722 -0.0072 3.5708 38 1 1.6939 0.9333 4.8319 39 1 0.8582 2.3351 5.6335 40 1 0.6365 0.3231 -2.1081 41 1 0.0996 1.4594 -4.2249 42 1 0.8598 3.7690 -4.6113 43 1 2.1509 4.9472 -2.8779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753378501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:21 Heat of formation + Delta-G solvation = -20.927053 kcal Electronic energy + Delta-G solvation = -28706.927527 eV Core-core repulsion = 24669.758074 eV Total energy + Delta-G solvation = -4037.169453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.67889 -40.71223 -38.89118 -37.72753 -37.04337 -33.25567 -32.75086 -31.77944 -30.81560 -29.66007 -27.58162 -26.25861 -24.87851 -24.74420 -23.27509 -22.80303 -21.99089 -19.91779 -19.29395 -17.83424 -17.58953 -16.78635 -16.53290 -16.05631 -15.53803 -15.38973 -15.32748 -14.90413 -14.82589 -14.67793 -14.17163 -13.88470 -13.70330 -13.32436 -12.91501 -12.84576 -12.59823 -12.49887 -12.40384 -12.20965 -12.09573 -11.72128 -11.60990 -11.46533 -11.26384 -10.95953 -10.91195 -10.56511 -10.29028 -10.17076 -9.84669 -9.52650 -9.28837 -8.97716 -8.84805 -8.64167 -8.35663 -6.93442 -5.79878 -3.13303 1.05776 1.16996 2.82804 3.27278 3.35635 3.41609 3.43758 3.59754 3.73768 4.30644 4.41075 4.41669 4.70849 4.81978 4.91409 5.01433 5.09620 5.17957 5.31755 5.45133 5.49297 5.54897 5.55938 5.58827 5.67153 5.76512 5.94850 6.02292 6.06856 6.08922 6.11436 6.21848 6.22095 6.30291 6.39348 6.48788 6.79317 6.83297 6.96687 7.19006 7.31798 7.55343 7.92181 7.98608 8.56192 9.00319 9.66976 10.54689 11.36453 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.003970 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.805793 B = 7051.947099 C = 7673.997913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.363 6.363 3 C 0.147 3.853 4 C -0.137 4.137 5 C 0.494 3.506 6 O -0.529 6.529 7 N -0.683 5.683 8 C 0.088 3.912 9 C 0.152 3.848 10 N -0.610 5.610 11 C -0.224 4.224 12 H 0.080 0.920 13 C -0.005 4.005 14 N -0.919 5.919 15 Si 0.909 3.091 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.290 1.290 19 C 0.111 3.889 20 C -0.142 4.142 21 C -0.080 4.080 22 C -0.141 4.141 23 C -0.087 4.087 24 C -0.166 4.166 25 C 0.146 3.854 26 F -0.121 7.121 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.253 0.747 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.144 3.266 -14.501 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.281 6.281 3 C 0.104 3.896 4 C -0.194 4.194 5 C 0.277 3.723 6 O -0.406 6.406 7 N -0.333 5.333 8 C -0.018 4.018 9 C 0.026 3.974 10 N -0.337 5.337 11 C -0.351 4.351 12 H 0.098 0.902 13 C -0.202 4.202 14 N -0.566 5.566 15 Si 0.740 3.260 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.217 1.217 19 C -0.016 4.016 20 C -0.144 4.144 21 C -0.098 4.098 22 C -0.159 4.159 23 C -0.105 4.105 24 C -0.185 4.185 25 C 0.126 3.874 26 F -0.099 7.099 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.894 3.729 -14.480 18.500 hybrid contribution -0.807 -0.913 0.755 1.433 sum 10.087 2.816 -13.725 17.264 Atomic orbital electron populations 1.23380 0.79689 1.03626 1.03055 1.87983 1.20998 1.24488 1.94666 1.20434 0.96079 0.83318 0.89762 1.21817 0.89747 1.03895 1.03988 1.20809 0.78727 0.88432 0.84296 1.90715 1.52796 1.14845 1.82257 1.45555 1.63087 1.12749 1.11899 1.22906 0.98094 0.94642 0.86162 1.22727 0.90822 0.89612 0.94254 1.46154 1.13104 1.21509 1.52965 1.19063 0.97480 0.96134 1.22443 0.90235 1.24761 0.96686 0.98833 0.99936 1.69842 1.12396 1.37988 1.36380 0.86091 0.79240 0.82591 0.78085 1.20485 1.21805 1.21719 1.22912 0.90777 0.94467 0.93433 1.20022 1.02925 0.94263 0.97143 1.21134 0.95690 1.00685 0.92272 1.21139 1.01755 0.95408 0.97602 1.21012 0.96290 0.94650 0.98571 1.21121 1.02806 1.01230 0.93311 1.17336 0.93772 0.89980 0.86296 1.91533 1.74985 1.80836 1.62560 0.88707 0.91268 0.92714 0.90559 0.90488 0.89920 0.75584 0.89314 0.94711 0.90614 0.93727 0.93411 0.93555 0.83961 0.85319 0.85208 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.09 101.05 0.92 0.89 16 2 O -0.36 -5.34 9.10 -35.23 -0.32 -5.66 16 3 C 0.15 2.19 0.80 -92.92 -0.07 2.12 16 4 C -0.14 -1.71 8.63 37.16 0.32 -1.39 16 5 C 0.49 8.76 5.51 -10.98 -0.06 8.70 16 6 O -0.53 -10.79 12.99 5.56 0.07 -10.72 16 7 N -0.68 -12.32 4.13 -55.35 -0.23 -12.55 16 8 C 0.09 1.72 4.40 -70.16 -0.31 1.41 16 9 C 0.15 3.60 7.33 -2.84 -0.02 3.58 16 10 N -0.61 -15.07 3.70 -177.90 -0.66 -15.73 16 11 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 12 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 13 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 14 N -0.92 -26.63 11.39 55.49 0.63 -26.00 16 15 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 C 0.11 2.20 8.68 -2.97 -0.03 2.17 16 20 C -0.14 -2.03 4.41 -104.56 -0.46 -2.50 16 21 C -0.08 -0.99 7.68 -39.59 -0.30 -1.29 16 22 C -0.14 -1.46 10.04 -39.57 -0.40 -1.85 16 23 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 24 C -0.17 -1.96 10.03 -39.51 -0.40 -2.36 16 25 C 0.15 2.12 6.19 -39.42 -0.24 1.87 16 26 F -0.12 -1.95 12.92 2.25 0.03 -1.92 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.28 6.33 -51.93 -0.33 0.95 16 29 H 0.05 0.78 5.03 -51.93 -0.26 0.52 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.04 6.45 -51.93 -0.33 0.70 16 33 H 0.41 7.28 7.90 -40.82 -0.32 6.96 16 34 H 0.09 1.71 7.51 -51.93 -0.39 1.32 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.99 7.17 -51.93 -0.37 1.62 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.14 1.63 5.45 -52.48 -0.29 1.35 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -31.82 349.13 -7.59 -39.42 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.65 Total: 7.61 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.71 Total: 3.62 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.26 Total: -54.28 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.25 Total: -16.38 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.03 Total: -1.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.82 -7.59 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.489 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds