Wall clock time and date at job start Sat Apr 11 2020 00:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00050 * 2 1 4 4 C 1.53008 * 109.47238 * 173.99525 * 3 2 1 5 5 C 1.50703 * 109.47200 * 53.99488 * 3 2 1 6 6 O 1.21278 * 119.99725 * 214.99699 * 5 3 2 7 7 N 1.34778 * 119.99705 * 35.00111 * 5 3 2 8 8 C 1.46496 * 119.99881 * 180.02562 * 7 5 3 9 9 C 1.53948 * 113.74249 * 106.25639 * 8 7 5 10 10 N 1.47805 * 86.03521 * 90.88255 * 9 8 7 11 11 C 1.36939 * 134.45615 * 204.64040 * 10 9 8 12 12 H 1.08003 * 120.00223 * 179.86564 * 11 10 9 13 13 C 1.38817 * 120.00019 * 359.87329 * 11 10 9 14 14 N 1.31615 * 119.99495 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47450 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46700 * 120.00307 * 15 13 11 18 18 H 1.48502 * 109.47437 * 239.99761 * 15 13 11 19 19 C 1.47581 * 91.05157 * 24.55089 * 10 9 8 20 20 C 1.50702 * 109.47028 * 293.99361 * 3 2 1 21 21 C 1.38214 * 120.01550 * 357.95177 * 20 3 2 22 22 C 1.38230 * 120.02485 * 179.71925 * 21 20 3 23 23 C 1.38267 * 120.05153 * 0.55641 * 22 21 20 24 24 C 1.38177 * 120.02400 * 359.72065 * 23 22 21 25 25 C 1.38438 * 120.01170 * 178.22587 * 20 3 2 26 26 F 1.35108 * 120.02778 * 359.97438 * 25 20 3 27 27 H 1.09006 * 109.47287 * 171.21265 * 1 2 3 28 28 H 1.09002 * 109.46842 * 291.20552 * 1 2 3 29 29 H 1.08998 * 109.47457 * 51.21351 * 1 2 3 30 30 H 1.09005 * 109.46740 * 300.00396 * 4 3 2 31 31 H 1.08999 * 109.47262 * 59.99923 * 4 3 2 32 32 H 1.08994 * 109.47113 * 180.02562 * 4 3 2 33 33 H 0.97003 * 120.00121 * 359.97438 * 7 5 3 34 34 H 1.09000 * 112.94111 * 334.66903 * 8 7 5 35 35 H 1.09004 * 113.77063 * 205.15027 * 9 8 7 36 36 H 1.09001 * 113.76662 * 336.54419 * 9 8 7 37 37 H 0.97007 * 119.99572 * 180.02562 * 14 13 11 38 38 H 1.08998 * 113.76587 * 221.14961 * 19 10 9 39 39 H 1.08998 * 113.76837 * 89.75227 * 19 10 9 40 40 H 1.08003 * 119.98317 * 0.02562 * 21 20 3 41 41 H 1.07999 * 119.97233 * 180.25436 * 22 21 20 42 42 H 1.07989 * 119.98696 * 179.74384 * 23 22 21 43 43 H 1.07996 * 120.01230 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5283 1.1878 0.1509 5 6 1.4515 2.1041 1.1494 6 8 1.2655 3.2961 1.0257 7 7 1.1587 1.4936 2.3148 8 6 0.6150 2.2698 3.4319 9 6 -0.8847 2.0288 3.6823 10 7 -0.4536 0.9602 4.6080 11 6 -1.0314 -0.1857 5.0856 12 1 -0.4890 -0.8182 5.7728 13 6 -2.3144 -0.5346 4.6865 14 7 -2.9755 0.2364 3.8494 15 14 -3.1023 -2.0981 5.3376 16 1 -2.1582 -2.7824 6.2571 17 1 -4.3473 -1.7563 6.0715 18 1 -3.4282 -2.9981 4.2022 19 6 0.8499 1.6226 4.8087 20 6 1.6867 1.9993 -1.2981 21 6 0.9672 1.3376 -2.2752 22 6 0.6654 1.9758 -3.4636 23 6 1.0926 3.2728 -3.6809 24 6 1.8169 3.9343 -2.7078 25 6 2.1149 3.2979 -1.5145 26 9 2.8226 3.9440 -0.5621 27 1 -0.3634 -1.0156 -0.1570 28 1 -0.3633 0.3717 0.9581 29 1 -0.3634 0.6437 -0.8010 30 1 3.7622 0.6858 1.0898 31 1 3.9324 0.6102 -0.6804 32 1 3.9715 2.1836 0.1514 33 1 1.3072 0.5401 2.4135 34 1 0.8891 3.3239 3.3900 35 1 -1.3871 2.8611 4.1755 36 1 -1.4230 1.6634 2.8078 37 1 -3.8722 -0.0072 3.5708 38 1 1.6939 0.9333 4.8319 39 1 0.8582 2.3351 5.6335 40 1 0.6365 0.3231 -2.1081 41 1 0.0996 1.4594 -4.2249 42 1 0.8598 3.7690 -4.6113 43 1 2.1509 4.9472 -2.8779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753378501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:20 Heat of formation + Delta-G solvation = -41.275022 kcal Electronic energy + Delta-G solvation = -28707.809881 eV Core-core repulsion = 24669.758074 eV Total energy + Delta-G solvation = -4038.051807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.76822 -41.96969 -40.22552 -39.09214 -38.38483 -34.96022 -33.85733 -33.63911 -31.73239 -30.63236 -29.50241 -27.45192 -26.63040 -26.07939 -24.84355 -23.73292 -23.29220 -21.19354 -20.98854 -19.07883 -18.82332 -18.58932 -17.60949 -17.21189 -16.97612 -16.88820 -16.54473 -16.43640 -15.90541 -15.85848 -15.59534 -15.47202 -15.09117 -14.60032 -14.51559 -14.32644 -13.94110 -13.52638 -13.45277 -13.33277 -13.25712 -13.19878 -13.05735 -12.83622 -12.76161 -12.43582 -12.35433 -12.13530 -12.05563 -11.72976 -11.43022 -11.34641 -10.97005 -10.57263 -9.96133 -9.90288 -9.57506 -8.94459 -7.88768 -5.23386 0.13795 0.25855 1.42974 1.46306 1.47344 1.57122 1.98252 2.46978 2.52917 2.65176 3.25714 3.30908 3.39899 3.41774 3.55637 3.77871 3.84747 3.93370 4.14322 4.29592 4.38439 4.42202 4.42907 4.44339 4.53000 4.57326 4.65115 4.75706 4.82287 4.85881 4.87157 5.01123 5.07042 5.13116 5.18735 5.24004 5.33450 5.44488 5.47124 5.63850 5.81264 5.90550 5.95024 6.51791 6.90765 7.12202 7.61036 8.54433 9.27488 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.003970 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.805793 B = 7051.947099 C = 7673.997913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.358 6.358 3 C 0.150 3.850 4 C -0.134 4.134 5 C 0.493 3.507 6 O -0.557 6.557 7 N -0.681 5.681 8 C 0.110 3.890 9 C 0.149 3.851 10 N -0.632 5.632 11 C -0.230 4.230 12 H 0.087 0.913 13 C -0.062 4.062 14 N -0.952 5.952 15 Si 0.974 3.026 16 H -0.265 1.265 17 H -0.298 1.298 18 H -0.291 1.291 19 C 0.119 3.881 20 C -0.163 4.163 21 C -0.092 4.092 22 C -0.134 4.134 23 C -0.079 4.079 24 C -0.171 4.171 25 C 0.114 3.886 26 F -0.139 7.139 27 H 0.112 0.888 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.410 0.590 34 H 0.096 0.904 35 H 0.021 0.979 36 H 0.042 0.958 37 H 0.246 0.754 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 2.472 -15.906 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.277 6.277 3 C 0.107 3.893 4 C -0.191 4.191 5 C 0.278 3.722 6 O -0.436 6.436 7 N -0.331 5.331 8 C 0.003 3.997 9 C 0.022 3.978 10 N -0.359 5.359 11 C -0.358 4.358 12 H 0.104 0.896 13 C -0.255 4.255 14 N -0.601 5.601 15 Si 0.803 3.197 16 H -0.189 1.189 17 H -0.225 1.225 18 H -0.218 1.218 19 C -0.006 4.006 20 C -0.165 4.165 21 C -0.110 4.110 22 C -0.152 4.152 23 C -0.097 4.097 24 C -0.189 4.189 25 C 0.094 3.906 26 F -0.117 7.117 27 H 0.130 0.870 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.904 2.929 -15.877 20.059 hybrid contribution -1.101 -0.606 1.123 1.685 sum 10.803 2.323 -14.754 18.433 Atomic orbital electron populations 1.23299 0.79977 1.04625 1.01184 1.87988 1.20617 1.24517 1.94535 1.20468 0.97100 0.82777 0.88950 1.21841 0.88030 1.04119 1.05119 1.21428 0.77808 0.88357 0.84610 1.90693 1.53876 1.16258 1.82729 1.45524 1.62962 1.12669 1.11896 1.22565 0.94911 0.95297 0.86920 1.22616 0.93146 0.89009 0.92985 1.46392 1.14826 1.21412 1.53266 1.19445 0.97651 0.97005 1.21738 0.89562 1.25543 0.97451 1.01883 1.00608 1.70037 1.12312 1.39772 1.37956 0.85071 0.78012 0.79161 0.77429 1.18898 1.22507 1.21813 1.23048 0.89201 0.94588 0.93787 1.20083 1.04432 0.94658 0.97293 1.21322 0.95681 1.01115 0.92844 1.21566 1.00772 0.95587 0.97295 1.21471 0.94528 0.94449 0.99247 1.21449 1.02674 1.02085 0.92714 1.17721 0.95150 0.90538 0.87163 1.91477 1.75598 1.81186 1.63468 0.87007 0.95079 0.91874 0.89933 0.88641 0.90274 0.75408 0.88618 0.96096 0.93920 0.94453 0.91345 0.91692 0.83453 0.82133 0.81528 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.15 9.09 113.37 1.03 1.18 16 2 O -0.36 -10.35 9.10 -148.98 -1.36 -11.70 16 3 C 0.15 4.42 0.80 -12.28 -0.01 4.41 16 4 C -0.13 -3.23 8.63 71.98 0.62 -2.61 16 5 C 0.49 17.71 5.51 87.66 0.48 18.19 16 6 O -0.56 -23.21 12.99 -3.02 -0.04 -23.25 16 7 N -0.68 -24.82 4.13 -447.42 -1.85 -26.66 16 8 C 0.11 4.32 4.40 46.75 0.21 4.53 16 9 C 0.15 7.31 7.33 86.44 0.63 7.94 16 10 N -0.63 -31.40 3.70 -716.76 -2.65 -34.06 16 11 C -0.23 -12.50 10.70 84.03 0.90 -11.60 16 12 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 13 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 14 N -0.95 -56.75 11.39 21.65 0.25 -56.51 16 15 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 16 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 C 0.12 4.60 8.68 86.48 0.75 5.35 16 20 C -0.16 -4.58 4.41 -19.82 -0.09 -4.67 16 21 C -0.09 -2.12 7.68 22.26 0.17 -1.95 16 22 C -0.13 -2.37 10.04 22.27 0.22 -2.14 16 23 C -0.08 -1.33 10.04 22.26 0.22 -1.10 16 24 C -0.17 -3.75 10.03 22.31 0.22 -3.52 16 25 C 0.11 3.26 6.19 22.38 0.14 3.40 16 26 F -0.14 -4.55 12.92 44.97 0.58 -3.97 16 27 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 28 H 0.03 1.18 6.33 -2.39 -0.02 1.17 16 29 H 0.06 1.79 5.03 -2.39 -0.01 1.77 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.97 6.45 -2.39 -0.02 1.96 16 33 H 0.41 14.67 7.90 -92.71 -0.73 13.94 16 34 H 0.10 3.68 7.51 -2.39 -0.02 3.67 16 35 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.04 2.36 7.17 -2.39 -0.02 2.35 16 37 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.15 3.15 5.45 -2.91 -0.02 3.13 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.17 1.54 8.06 -2.92 -0.02 1.52 16 43 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -70.32 349.13 3.25 -67.07 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.31 Total: 27.70 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 5.97 Total: 14.44 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.25 Total: -117.23 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.39 Total: -34.96 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.58 Total: -3.97 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.32 3.25 -67.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.799 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds