Wall clock time and date at job start Sat Apr 11 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33819 * 124.52036 * 90.00267 * 4 3 2 6 6 C 1.37468 * 115.09996 * 179.97438 * 5 4 3 7 7 C 1.36648 * 113.29892 * 359.97438 * 6 5 4 8 8 C 1.46579 * 125.45907 * 179.97438 * 7 6 5 9 9 O 1.21706 * 120.00483 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99946 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47559 * 325.00131 * 11 10 8 13 13 C 1.53003 * 109.47029 * 204.99812 * 11 10 8 14 14 N 1.46500 * 109.46752 * 55.00313 * 13 11 10 15 15 C 1.36942 * 119.99394 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00158 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99553 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00185 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47074 * 90.00504 * 19 17 15 21 21 H 1.48499 * 109.47164 * 210.00586 * 19 17 15 22 22 H 1.48500 * 109.47510 * 330.00286 * 19 17 15 23 23 C 1.53004 * 109.46847 * 84.99986 * 11 10 8 24 24 C 1.52999 * 117.50049 * 8.74696 * 23 11 10 25 25 C 1.52991 * 117.50058 * 300.08562 * 23 11 10 26 26 S 1.70611 * 124.52455 * 269.69914 * 4 3 2 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08007 * 122.44950 * 359.93581 * 5 4 3 35 35 H 1.08005 * 123.34894 * 179.97438 * 6 5 4 36 36 H 0.97003 * 120.00178 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.46861 * 175.00159 * 13 11 10 38 38 H 1.08998 * 109.47025 * 294.99853 * 13 11 10 39 39 H 0.96998 * 120.00448 * 359.97438 * 14 13 11 40 40 H 0.97006 * 120.00224 * 179.97438 * 18 17 15 41 41 H 1.09000 * 115.54707 * 154.41738 * 23 11 10 42 42 H 1.08999 * 117.49795 * 0.02562 * 24 23 11 43 43 H 1.08998 * 117.49700 * 145.01893 * 24 23 11 44 44 H 1.09000 * 117.50310 * 214.98030 * 25 23 11 45 45 H 1.09001 * 117.50030 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4422 -1.1016 6 6 5.6619 1.4427 -0.8760 7 6 5.9891 1.4439 0.4507 8 6 7.3519 1.4441 0.9904 9 8 8.3058 1.4428 0.2346 10 7 7.5487 1.4448 2.3237 11 6 8.9107 1.4444 2.8632 12 1 9.5583 0.8544 2.2146 13 6 8.9032 0.8356 4.2668 14 7 8.2938 -0.4958 4.2183 15 6 8.1778 -1.2377 5.3635 16 1 8.5358 -0.8415 6.3022 17 6 7.5999 -2.4989 5.3176 18 7 7.1640 -2.9819 4.1735 19 14 7.4421 -3.5113 6.8796 20 1 6.1431 -3.2124 7.5341 21 1 7.5053 -4.9559 6.5416 22 1 8.5526 -3.1705 7.8047 23 6 9.4318 2.8813 2.9332 24 6 8.4355 4.0085 2.6546 25 6 9.5141 3.6676 1.6234 26 16 4.5134 1.4499 1.4067 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8837 1.4411 -2.0958 35 1 6.3956 1.4423 -1.6686 36 1 6.7884 1.4454 2.9262 37 1 9.9268 0.7536 4.6328 38 1 8.3279 1.4744 4.9369 39 1 7.9726 -0.8517 3.3751 40 1 6.7605 -3.8635 4.1414 41 1 10.2041 3.0654 3.6801 42 1 7.4087 3.7265 2.4218 43 1 8.5525 4.9343 3.2179 44 1 10.3403 4.3693 1.5086 45 1 9.1967 3.1614 0.7117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754442341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:26 Heat of formation + Delta-G solvation = 20.201201 kcal Electronic energy + Delta-G solvation = -24830.441408 eV Core-core repulsion = 21361.268587 eV Total energy + Delta-G solvation = -3469.172822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99942 -38.21226 -36.93402 -34.95918 -34.89285 -33.29497 -31.29393 -30.33837 -28.37004 -26.67964 -24.15641 -23.76733 -22.22362 -21.80333 -21.60394 -21.42812 -19.70544 -19.10782 -17.89077 -17.18472 -16.18575 -15.91950 -15.74612 -15.12286 -15.00348 -14.48961 -14.34870 -13.93725 -13.75869 -13.43895 -13.28267 -13.21453 -12.89642 -12.73221 -12.43746 -12.05847 -11.89636 -11.64197 -11.59952 -11.39876 -11.33974 -11.17006 -10.98933 -10.89145 -10.82887 -10.73769 -10.23044 -10.10236 -9.80706 -9.71264 -9.55675 -8.92398 -8.75724 -8.56100 -8.50964 -6.96814 -5.77967 -3.08223 0.57559 1.51181 1.94333 2.44070 3.36439 3.42115 3.46953 3.47576 3.49330 4.08173 4.49791 4.55621 4.74777 4.83221 4.91265 5.03593 5.13179 5.20609 5.22318 5.26529 5.36495 5.47941 5.54073 5.56033 5.57471 5.58269 5.75628 5.84651 5.86583 5.89545 6.00324 6.02875 6.04128 6.08525 6.19932 6.23783 6.33132 6.39039 6.47142 6.54659 6.68200 6.90618 7.67867 7.77841 8.39213 8.44255 9.51237 10.06611 10.42158 11.44172 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008230 B = 0.004623 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.565602 B = 6054.780066 C = 8764.657974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.049 4.049 4 C -0.199 4.199 5 C -0.154 4.154 6 C -0.058 4.058 7 C -0.262 4.262 8 C 0.592 3.408 9 O -0.533 6.533 10 N -0.704 5.704 11 C 0.169 3.831 12 H 0.094 0.906 13 C 0.147 3.853 14 N -0.732 5.732 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.160 4.160 24 C -0.178 4.178 25 C -0.186 4.186 26 S 0.218 5.782 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.402 0.598 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 13.292 -9.183 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.319 4.319 5 C -0.185 4.185 6 C -0.091 4.091 7 C -0.382 4.382 8 C 0.378 3.622 9 O -0.413 6.413 10 N -0.354 5.354 11 C 0.064 3.936 12 H 0.111 0.889 13 C 0.019 3.981 14 N -0.377 5.377 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.180 4.180 24 C -0.215 4.215 25 C -0.223 4.223 26 S 0.487 5.513 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.237 0.763 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.959 13.229 -7.945 17.844 hybrid contribution -0.270 -0.819 -0.677 1.096 sum -9.229 12.411 -8.623 17.707 Atomic orbital electron populations 1.21771 0.95413 1.01975 1.01752 1.21585 0.95834 0.95541 1.03159 1.20225 0.87231 0.98105 1.03288 1.24266 1.01110 1.08408 0.98139 1.19886 0.92598 1.06700 0.99355 1.20674 0.96053 0.97289 0.95129 1.24649 0.97143 1.18353 0.98087 1.16912 0.86634 0.76082 0.82525 1.90734 1.41616 1.50722 1.58226 1.45862 1.09700 1.73887 1.05921 1.20802 0.82355 0.93673 0.96746 0.88852 1.20925 0.97390 0.88017 0.91740 1.42357 1.72400 1.13718 1.09213 1.19205 1.33176 0.97072 0.87960 0.91109 1.24741 1.01455 0.97645 0.96840 1.69672 1.45943 1.18420 1.23748 0.86201 0.77756 0.79681 0.82590 1.21720 1.21794 1.20750 1.22697 1.02398 0.92546 1.00371 1.22886 0.95995 0.98798 1.03839 1.23338 1.00776 1.03092 0.95113 1.83246 0.94089 1.66963 1.07001 0.92613 0.92748 0.92420 0.91459 0.91318 0.90697 0.90011 0.84216 0.83218 0.76290 0.94629 0.95571 0.77998 0.93483 0.87128 0.89158 0.89431 0.89685 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.12 -1.11 5.92 -26.74 -0.16 -1.26 16 3 C -0.05 -0.43 5.65 -27.88 -0.16 -0.59 16 4 C -0.20 -2.26 5.53 -35.86 -0.20 -2.46 16 5 C -0.15 -1.77 9.99 -41.41 -0.41 -2.19 16 6 C -0.06 -0.79 10.01 -40.44 -0.40 -1.20 16 7 C -0.26 -3.99 6.45 -36.79 -0.24 -4.23 16 8 C 0.59 10.31 6.62 -12.90 -0.09 10.23 16 9 O -0.53 -10.43 13.87 5.18 0.07 -10.36 16 10 N -0.70 -11.88 3.05 -55.14 -0.17 -12.05 16 11 C 0.17 2.92 2.59 -67.93 -0.18 2.75 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 13 C 0.15 2.89 5.80 -4.04 -0.02 2.87 16 14 N -0.73 -18.18 5.43 -59.90 -0.33 -18.50 16 15 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 19 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.16 -2.33 5.70 -90.62 -0.52 -2.85 16 24 C -0.18 -2.38 9.74 -26.70 -0.26 -2.64 16 25 C -0.19 -2.66 9.82 -26.70 -0.26 -2.92 16 26 S 0.22 2.84 22.10 -107.50 -2.38 0.47 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.40 6.65 7.72 -40.82 -0.31 6.33 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.39 10.29 7.33 -40.82 -0.30 9.99 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.09 1.25 6.67 -51.93 -0.35 0.90 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.12 1.92 5.01 -51.93 -0.26 1.66 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -31.13 381.85 -11.19 -42.32 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -7.08 Total: 14.87 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.77 Total: -12.46 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.23 Total: -57.74 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.38 Total: 0.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.13 -11.19 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754442341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.519 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds