Wall clock time and date at job start Sat Apr 11 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33819 * 124.52036 * 90.00267 * 4 3 2 6 6 C 1.37468 * 115.09996 * 179.97438 * 5 4 3 7 7 C 1.36648 * 113.29892 * 359.97438 * 6 5 4 8 8 C 1.46579 * 125.45907 * 179.97438 * 7 6 5 9 9 O 1.21706 * 120.00483 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99946 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47559 * 325.00131 * 11 10 8 13 13 C 1.53003 * 109.47029 * 204.99812 * 11 10 8 14 14 N 1.46500 * 109.46752 * 55.00313 * 13 11 10 15 15 C 1.36942 * 119.99394 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00158 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99553 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00185 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47074 * 90.00504 * 19 17 15 21 21 H 1.48499 * 109.47164 * 210.00586 * 19 17 15 22 22 H 1.48500 * 109.47510 * 330.00286 * 19 17 15 23 23 C 1.53004 * 109.46847 * 84.99986 * 11 10 8 24 24 C 1.52999 * 117.50049 * 8.74696 * 23 11 10 25 25 C 1.52991 * 117.50058 * 300.08562 * 23 11 10 26 26 S 1.70611 * 124.52455 * 269.69914 * 4 3 2 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08007 * 122.44950 * 359.93581 * 5 4 3 35 35 H 1.08005 * 123.34894 * 179.97438 * 6 5 4 36 36 H 0.97003 * 120.00178 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.46861 * 175.00159 * 13 11 10 38 38 H 1.08998 * 109.47025 * 294.99853 * 13 11 10 39 39 H 0.96998 * 120.00448 * 359.97438 * 14 13 11 40 40 H 0.97006 * 120.00224 * 179.97438 * 18 17 15 41 41 H 1.09000 * 115.54707 * 154.41738 * 23 11 10 42 42 H 1.08999 * 117.49795 * 0.02562 * 24 23 11 43 43 H 1.08998 * 117.49700 * 145.01893 * 24 23 11 44 44 H 1.09000 * 117.50310 * 214.98030 * 25 23 11 45 45 H 1.09001 * 117.50030 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4422 -1.1016 6 6 5.6619 1.4427 -0.8760 7 6 5.9891 1.4439 0.4507 8 6 7.3519 1.4441 0.9904 9 8 8.3058 1.4428 0.2346 10 7 7.5487 1.4448 2.3237 11 6 8.9107 1.4444 2.8632 12 1 9.5583 0.8544 2.2146 13 6 8.9032 0.8356 4.2668 14 7 8.2938 -0.4958 4.2183 15 6 8.1778 -1.2377 5.3635 16 1 8.5358 -0.8415 6.3022 17 6 7.5999 -2.4989 5.3176 18 7 7.1640 -2.9819 4.1735 19 14 7.4421 -3.5113 6.8796 20 1 6.1431 -3.2124 7.5341 21 1 7.5053 -4.9559 6.5416 22 1 8.5526 -3.1705 7.8047 23 6 9.4318 2.8813 2.9332 24 6 8.4355 4.0085 2.6546 25 6 9.5141 3.6676 1.6234 26 16 4.5134 1.4499 1.4067 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8837 1.4411 -2.0958 35 1 6.3956 1.4423 -1.6686 36 1 6.7884 1.4454 2.9262 37 1 9.9268 0.7536 4.6328 38 1 8.3279 1.4744 4.9369 39 1 7.9726 -0.8517 3.3751 40 1 6.7605 -3.8635 4.1414 41 1 10.2041 3.0654 3.6801 42 1 7.4087 3.7265 2.4218 43 1 8.5525 4.9343 3.2179 44 1 10.3403 4.3693 1.5086 45 1 9.1967 3.1614 0.7117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754442341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:26 Heat of formation + Delta-G solvation = 3.270613 kcal Electronic energy + Delta-G solvation = -24831.175574 eV Core-core repulsion = 21361.268587 eV Total energy + Delta-G solvation = -3469.906987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32708 -39.23938 -38.18706 -36.56873 -35.75899 -34.86895 -33.11924 -31.36993 -29.90712 -27.71618 -25.96155 -24.77884 -23.51708 -23.11057 -22.76291 -22.34525 -21.01817 -20.28775 -19.24310 -18.90206 -17.36176 -17.27886 -16.95033 -16.65713 -16.03274 -15.80858 -15.46928 -15.24988 -15.15957 -14.80039 -14.68221 -14.44147 -14.15777 -13.77447 -13.54077 -13.28051 -13.13574 -12.86961 -12.74828 -12.71284 -12.67659 -12.38016 -12.31438 -12.09629 -12.06323 -11.87674 -11.84148 -11.52445 -11.36341 -11.05533 -10.97539 -10.81985 -10.09779 -9.62829 -9.53991 -9.02437 -7.93779 -5.24243 -0.49695 0.47070 0.93102 1.39426 1.48422 1.49906 1.58317 2.06641 2.20317 2.55818 2.93075 3.40517 3.58318 3.68208 3.80460 3.97722 4.05840 4.07164 4.15482 4.16573 4.30016 4.38780 4.43561 4.46940 4.59386 4.61418 4.72741 4.81004 4.83268 4.84982 4.95217 5.01737 5.05125 5.10218 5.16296 5.22426 5.24496 5.29204 5.37687 5.43150 5.45651 5.48411 5.52013 6.25914 6.42452 7.09787 7.33352 8.05362 8.29918 9.29215 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008230 B = 0.004623 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.565602 B = 6054.780066 C = 8764.657974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.048 4.048 4 C -0.183 4.183 5 C -0.159 4.159 6 C -0.053 4.053 7 C -0.300 4.300 8 C 0.589 3.411 9 O -0.564 6.564 10 N -0.701 5.701 11 C 0.177 3.823 12 H 0.064 0.936 13 C 0.150 3.850 14 N -0.744 5.744 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.973 3.027 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.269 1.269 23 C -0.165 4.165 24 C -0.164 4.164 25 C -0.188 4.188 26 S 0.210 5.790 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.403 0.597 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 14.806 -8.737 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.087 4.087 4 C -0.303 4.303 5 C -0.188 4.188 6 C -0.087 4.087 7 C -0.420 4.420 8 C 0.377 3.623 9 O -0.447 6.447 10 N -0.351 5.351 11 C 0.072 3.928 12 H 0.083 0.917 13 C 0.023 3.977 14 N -0.387 5.387 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.802 3.198 20 H -0.212 1.212 21 H -0.226 1.226 22 H -0.194 1.194 23 C -0.185 4.185 24 C -0.201 4.201 25 C -0.225 4.225 26 S 0.479 5.521 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.188 0.812 35 H 0.168 0.832 36 H 0.238 0.762 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.148 0.852 42 H 0.100 0.900 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.233 14.789 -7.466 19.472 hybrid contribution 0.102 -1.250 -0.874 1.529 sum -10.131 13.539 -8.340 18.854 Atomic orbital electron populations 1.21749 0.93945 1.02244 1.02667 1.21572 0.97113 0.95368 1.02092 1.20373 0.85092 0.98294 1.04988 1.24671 1.02391 1.06203 0.97047 1.20123 0.91498 1.06401 1.00826 1.20925 0.97325 0.95914 0.94555 1.24542 0.96815 1.21530 0.99154 1.17223 0.87386 0.75331 0.82325 1.90706 1.42859 1.52315 1.58774 1.45811 1.09482 1.73831 1.05966 1.20587 0.82365 0.95191 0.94634 0.91739 1.21050 0.97243 0.85940 0.93465 1.42533 1.72711 1.15436 1.08023 1.19631 1.31785 0.97277 0.88945 0.90192 1.25548 1.02052 0.99044 0.99745 1.69842 1.47557 1.18528 1.25925 0.85149 0.78065 0.77384 0.79181 1.21168 1.22625 1.19403 1.22630 1.03597 0.90906 1.01359 1.22952 0.95157 0.98995 1.02957 1.23281 1.01986 1.03247 0.93988 1.83220 0.93591 1.67244 1.08017 0.92222 0.91300 0.92544 0.91692 0.93319 0.89761 0.87503 0.81233 0.83175 0.76161 0.93989 0.94178 0.79512 0.94128 0.85228 0.89987 0.86845 0.87592 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 3 C -0.05 -0.73 5.65 29.85 0.17 -0.56 16 4 C -0.18 -3.87 5.53 24.68 0.14 -3.74 16 5 C -0.16 -3.39 9.99 21.08 0.21 -3.18 16 6 C -0.05 -1.44 10.01 21.72 0.22 -1.22 16 7 C -0.30 -9.40 6.45 24.08 0.16 -9.25 16 8 C 0.59 21.45 6.62 86.42 0.57 22.03 16 9 O -0.56 -23.28 13.87 -4.37 -0.06 -23.34 16 10 N -0.70 -24.48 3.05 -446.57 -1.36 -25.84 16 11 C 0.18 6.25 2.59 44.99 0.12 6.37 16 12 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 13 C 0.15 5.86 5.80 86.38 0.50 6.36 16 14 N -0.74 -37.49 5.43 -343.44 -1.87 -39.36 16 15 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 18 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 19 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C -0.17 -4.67 5.70 -10.80 -0.06 -4.73 16 24 C -0.16 -4.12 9.74 30.62 0.30 -3.82 16 25 C -0.19 -5.24 9.82 30.61 0.30 -4.94 16 26 S 0.21 5.48 22.10 -56.49 -1.25 4.24 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.40 13.75 7.72 -92.71 -0.72 13.03 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.37 20.57 7.33 -92.71 -0.68 19.89 16 40 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 41 H 0.13 3.16 8.11 -2.39 -0.02 3.14 16 42 H 0.08 2.22 6.67 -2.39 -0.02 2.20 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.09 3.08 5.01 -2.39 -0.01 3.07 16 Total: -1.00 -68.00 381.85 2.20 -65.80 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -0.39 Total: 45.72 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.82 Total: -15.88 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -2.95 Total: -124.32 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.34 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.25 Total: 4.24 kcal Total: -68.00 2.20 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754442341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.071 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds