Wall clock time and date at job start Sat Apr 11 2020 00:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.50700 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.33819 * 124.52139 * 90.00039 * 4 3 2 6 6 C 1.37467 * 115.10375 * 180.02562 * 5 4 3 7 7 C 1.36655 * 113.29840 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.46205 * 179.73918 * 7 6 5 9 9 O 1.21702 * 119.99838 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00469 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00518 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.46982 * 35.00150 * 11 10 8 13 13 C 1.52997 * 109.46940 * 155.00289 * 11 10 8 14 14 N 1.46498 * 109.47462 * 304.99533 * 13 11 10 15 15 C 1.36930 * 120.00142 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00216 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47464 * 89.99940 * 19 17 15 21 21 H 1.48509 * 109.47222 * 210.00007 * 19 17 15 22 22 H 1.48500 * 109.47071 * 330.00022 * 19 17 15 23 23 C 1.53006 * 109.46889 * 275.00165 * 11 10 8 24 24 C 1.53002 * 117.49371 * 128.74407 * 23 11 10 25 25 C 1.52999 * 117.49669 * 60.08583 * 23 11 10 26 26 S 1.70616 * 124.52580 * 270.04384 * 4 3 2 27 27 H 1.09004 * 109.46995 * 300.00116 * 1 2 3 28 28 H 1.08999 * 109.47218 * 59.99372 * 1 2 3 29 29 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47088 * 240.00365 * 2 1 3 31 31 H 1.08995 * 109.47311 * 120.00145 * 2 1 3 32 32 H 1.09004 * 109.47282 * 60.00059 * 3 2 1 33 33 H 1.08999 * 109.47588 * 300.00402 * 3 2 1 34 34 H 1.08000 * 122.44960 * 0.05728 * 5 4 3 35 35 H 1.07999 * 123.35727 * 180.02562 * 6 5 4 36 36 H 0.97010 * 119.99717 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47535 * 65.00240 * 13 11 10 38 38 H 1.09004 * 109.46627 * 184.99820 * 13 11 10 39 39 H 0.97002 * 119.99725 * 0.02562 * 14 13 11 40 40 H 0.96996 * 120.00229 * 179.97438 * 18 17 15 41 41 H 1.08999 * 115.54665 * 274.41398 * 23 11 10 42 42 H 1.08991 * 117.49856 * 0.02562 * 24 23 11 43 43 H 1.09000 * 117.49362 * 145.01935 * 24 23 11 44 44 H 1.09000 * 117.49749 * 214.97730 * 25 23 11 45 45 H 1.09001 * 117.50124 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3058 1.4424 -1.1016 6 6 5.6619 1.4419 -0.8761 7 6 5.9891 1.4422 0.4507 8 6 7.3519 1.4364 0.9904 9 8 8.3057 1.4303 0.2345 10 7 7.5488 1.4379 2.3236 11 6 8.9108 1.4326 2.8631 12 1 9.5612 2.0180 2.2132 13 6 8.9063 2.0447 4.2653 14 7 8.3037 3.3790 4.2139 15 6 8.1903 4.1236 5.3574 16 1 8.5456 3.7275 6.2972 17 6 7.6188 5.3877 5.3087 18 7 7.1863 5.8707 4.1633 19 14 7.4648 6.4038 6.8685 20 1 8.6842 7.2336 7.0412 21 1 6.2751 7.2870 6.7686 22 1 7.3127 5.4987 8.0359 23 6 9.4247 -0.0067 2.9365 24 6 10.7874 -0.3031 2.3071 25 6 9.5069 -0.7950 1.6278 26 16 4.5134 1.4417 1.4067 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.8837 1.4431 -2.0957 35 1 6.3956 1.4422 -1.6685 36 1 6.7885 1.4424 2.9262 37 1 8.3278 1.4103 4.9368 38 1 9.9302 2.1224 4.6310 39 1 7.9842 3.7346 3.3698 40 1 6.7866 6.7538 4.1293 41 1 9.1569 -0.5560 3.8391 42 1 11.3179 0.5273 1.8412 43 1 11.4160 -1.0478 2.7954 44 1 9.2935 -1.8631 1.6695 45 1 9.1945 -0.2885 0.7146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754442342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:29 Heat of formation + Delta-G solvation = 15.897542 kcal Electronic energy + Delta-G solvation = -24609.091813 eV Core-core repulsion = 21139.732370 eV Total energy + Delta-G solvation = -3469.359442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.81844 -38.17806 -36.99125 -35.02429 -34.97071 -33.39896 -31.23721 -30.35759 -28.29287 -26.65327 -24.15233 -23.72677 -22.18592 -21.72226 -21.62284 -21.39063 -20.04940 -19.08965 -17.90444 -17.10555 -16.24806 -15.91804 -15.30858 -15.12195 -14.95677 -14.83410 -14.31891 -14.05068 -13.72736 -13.56072 -13.24822 -13.15302 -12.88126 -12.75975 -12.40127 -12.12215 -11.90847 -11.67801 -11.63577 -11.43829 -11.18811 -11.04846 -11.02048 -10.89823 -10.82043 -10.73369 -10.18635 -10.12272 -9.93328 -9.72263 -9.62813 -8.92152 -8.74603 -8.54154 -8.48934 -6.96862 -5.77806 -3.08161 0.59234 1.52857 1.96141 2.45581 3.35985 3.42637 3.45574 3.47680 3.49190 4.16213 4.47484 4.55377 4.70313 4.78387 4.90327 5.04464 5.11052 5.19071 5.23926 5.30119 5.36074 5.46070 5.47677 5.52526 5.55245 5.56546 5.77769 5.78420 5.84950 5.86945 5.91127 5.99424 6.03795 6.10245 6.20713 6.23305 6.37768 6.40343 6.47118 6.54324 6.66908 6.91836 7.67906 7.81090 8.39354 8.47089 9.51284 10.06565 10.42175 11.44324 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008793 B = 0.004114 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.553170 B = 6804.788702 C = 9157.354374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.052 4.052 4 C -0.200 4.200 5 C -0.154 4.154 6 C -0.059 4.059 7 C -0.260 4.260 8 C 0.594 3.406 9 O -0.537 6.537 10 N -0.702 5.702 11 C 0.169 3.831 12 H 0.090 0.910 13 C 0.148 3.852 14 N -0.732 5.732 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.185 4.185 26 S 0.219 5.781 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.401 0.599 37 H 0.025 0.975 38 H 0.037 0.963 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 -14.650 -9.233 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.320 4.320 5 C -0.185 4.185 6 C -0.093 4.093 7 C -0.380 4.380 8 C 0.380 3.620 9 O -0.417 6.417 10 N -0.351 5.351 11 C 0.065 3.935 12 H 0.108 0.892 13 C 0.019 3.981 14 N -0.377 5.377 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.184 4.184 24 C -0.207 4.207 25 C -0.222 4.222 26 S 0.488 5.512 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.236 0.764 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.528 -14.578 -7.987 18.683 hybrid contribution -0.271 0.833 -0.675 1.107 sum -8.800 -13.745 -8.662 18.476 Atomic orbital electron populations 1.21783 0.95407 1.01835 1.02004 1.21561 0.95853 0.95675 1.02712 1.20237 0.87314 0.97901 1.03611 1.24252 1.01066 1.08523 0.98166 1.19883 0.92608 1.06684 0.99339 1.20670 0.96039 0.97423 0.95130 1.24652 0.97163 1.18171 0.98059 1.16883 0.86587 0.76006 0.82523 1.90721 1.41654 1.51046 1.58266 1.45840 1.09600 1.73812 1.05894 1.20847 0.82559 0.93294 0.96808 0.89180 1.20928 0.97470 0.88001 0.91653 1.42355 1.72709 1.13372 1.09255 1.19201 1.33382 0.96858 0.87984 0.91107 1.24748 1.01469 0.97630 0.96862 1.69672 1.46137 1.18251 1.23707 0.86198 0.77195 0.80230 0.82582 1.21720 1.21783 1.20746 1.22651 1.01168 0.97031 0.97515 1.22894 0.90429 1.03393 1.04025 1.23272 1.01716 0.99344 0.97889 1.83245 0.94091 1.66917 1.06991 0.92524 0.92614 0.92544 0.91571 0.91666 0.90506 0.89919 0.84242 0.83229 0.76410 0.95720 0.94496 0.77996 0.93473 0.87825 0.88707 0.89188 0.89871 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.05 -0.45 5.64 -27.88 -0.16 -0.61 16 4 C -0.20 -2.28 5.53 -35.86 -0.20 -2.48 16 5 C -0.15 -1.78 9.99 -41.41 -0.41 -2.20 16 6 C -0.06 -0.81 10.01 -40.43 -0.40 -1.22 16 7 C -0.26 -4.00 6.45 -36.79 -0.24 -4.24 16 8 C 0.59 10.46 7.11 -12.90 -0.09 10.37 16 9 O -0.54 -10.54 13.86 5.19 0.07 -10.47 16 10 N -0.70 -12.04 4.49 -55.15 -0.25 -12.29 16 11 C 0.17 2.95 2.43 -67.93 -0.17 2.79 16 12 H 0.09 1.77 7.33 -51.93 -0.38 1.39 16 13 C 0.15 2.92 5.80 -4.04 -0.02 2.89 16 14 N -0.73 -18.26 5.43 -59.91 -0.33 -18.58 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.16 -2.40 5.36 -90.62 -0.49 -2.88 16 24 C -0.17 -2.29 10.18 -26.69 -0.27 -2.56 16 25 C -0.19 -2.64 9.74 -26.69 -0.26 -2.90 16 26 S 0.22 2.88 22.10 -107.50 -2.38 0.50 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.40 6.70 7.72 -40.82 -0.31 6.38 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.39 10.34 7.33 -40.82 -0.30 10.04 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 42 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.12 1.94 5.01 -51.93 -0.26 1.68 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -31.24 384.77 -11.26 -42.50 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -7.14 Total: 14.58 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.75 Total: -11.99 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.15 Total: -58.10 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.38 Total: 0.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.24 -11.26 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754442342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.395 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds