Wall clock time and date at job start Sat Apr 11 2020 00:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.50700 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.33819 * 124.52139 * 90.00039 * 4 3 2 6 6 C 1.37467 * 115.10375 * 180.02562 * 5 4 3 7 7 C 1.36655 * 113.29840 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.46205 * 179.73918 * 7 6 5 9 9 O 1.21702 * 119.99838 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00469 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00518 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.46982 * 35.00150 * 11 10 8 13 13 C 1.52997 * 109.46940 * 155.00289 * 11 10 8 14 14 N 1.46498 * 109.47462 * 304.99533 * 13 11 10 15 15 C 1.36930 * 120.00142 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00216 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47464 * 89.99940 * 19 17 15 21 21 H 1.48509 * 109.47222 * 210.00007 * 19 17 15 22 22 H 1.48500 * 109.47071 * 330.00022 * 19 17 15 23 23 C 1.53006 * 109.46889 * 275.00165 * 11 10 8 24 24 C 1.53002 * 117.49371 * 128.74407 * 23 11 10 25 25 C 1.52999 * 117.49669 * 60.08583 * 23 11 10 26 26 S 1.70616 * 124.52580 * 270.04384 * 4 3 2 27 27 H 1.09004 * 109.46995 * 300.00116 * 1 2 3 28 28 H 1.08999 * 109.47218 * 59.99372 * 1 2 3 29 29 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47088 * 240.00365 * 2 1 3 31 31 H 1.08995 * 109.47311 * 120.00145 * 2 1 3 32 32 H 1.09004 * 109.47282 * 60.00059 * 3 2 1 33 33 H 1.08999 * 109.47588 * 300.00402 * 3 2 1 34 34 H 1.08000 * 122.44960 * 0.05728 * 5 4 3 35 35 H 1.07999 * 123.35727 * 180.02562 * 6 5 4 36 36 H 0.97010 * 119.99717 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47535 * 65.00240 * 13 11 10 38 38 H 1.09004 * 109.46627 * 184.99820 * 13 11 10 39 39 H 0.97002 * 119.99725 * 0.02562 * 14 13 11 40 40 H 0.96996 * 120.00229 * 179.97438 * 18 17 15 41 41 H 1.08999 * 115.54665 * 274.41398 * 23 11 10 42 42 H 1.08991 * 117.49856 * 0.02562 * 24 23 11 43 43 H 1.09000 * 117.49362 * 145.01935 * 24 23 11 44 44 H 1.09000 * 117.49749 * 214.97730 * 25 23 11 45 45 H 1.09001 * 117.50124 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3058 1.4424 -1.1016 6 6 5.6619 1.4419 -0.8761 7 6 5.9891 1.4422 0.4507 8 6 7.3519 1.4364 0.9904 9 8 8.3057 1.4303 0.2345 10 7 7.5488 1.4379 2.3236 11 6 8.9108 1.4326 2.8631 12 1 9.5612 2.0180 2.2132 13 6 8.9063 2.0447 4.2653 14 7 8.3037 3.3790 4.2139 15 6 8.1903 4.1236 5.3574 16 1 8.5456 3.7275 6.2972 17 6 7.6188 5.3877 5.3087 18 7 7.1863 5.8707 4.1633 19 14 7.4648 6.4038 6.8685 20 1 8.6842 7.2336 7.0412 21 1 6.2751 7.2870 6.7686 22 1 7.3127 5.4987 8.0359 23 6 9.4247 -0.0067 2.9365 24 6 10.7874 -0.3031 2.3071 25 6 9.5069 -0.7950 1.6278 26 16 4.5134 1.4417 1.4067 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.8837 1.4431 -2.0957 35 1 6.3956 1.4422 -1.6685 36 1 6.7885 1.4424 2.9262 37 1 8.3278 1.4103 4.9368 38 1 9.9302 2.1224 4.6310 39 1 7.9842 3.7346 3.3698 40 1 6.7866 6.7538 4.1293 41 1 9.1569 -0.5560 3.8391 42 1 11.3179 0.5273 1.8412 43 1 11.4160 -1.0478 2.7954 44 1 9.2935 -1.8631 1.6695 45 1 9.1945 -0.2885 0.7146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754442342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:28 Heat of formation + Delta-G solvation = -1.627547 kcal Electronic energy + Delta-G solvation = -24609.851758 eV Core-core repulsion = 21139.732370 eV Total energy + Delta-G solvation = -3470.119387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15925 -39.21432 -38.23335 -36.63984 -35.74658 -35.03756 -33.07560 -31.36585 -29.81433 -27.70228 -25.92712 -24.75870 -23.43462 -23.09180 -22.67666 -22.33033 -21.38360 -20.27797 -19.26513 -18.86524 -17.47771 -17.04252 -16.73853 -16.62447 -16.02726 -15.85909 -15.73898 -15.28626 -15.03752 -14.81777 -14.66455 -14.39755 -14.20113 -13.80909 -13.49761 -13.31794 -13.20249 -12.80612 -12.73795 -12.70799 -12.51936 -12.35164 -12.29862 -12.08134 -12.05197 -11.86847 -11.85144 -11.50552 -11.34125 -11.15210 -11.00556 -10.90475 -10.08868 -9.61549 -9.53245 -9.03007 -7.93808 -5.24507 -0.48637 0.47936 0.94047 1.40430 1.48420 1.50060 1.58434 2.05483 2.19022 2.55926 3.00395 3.40211 3.54754 3.67848 3.81199 3.95538 4.06852 4.10272 4.15503 4.16812 4.30672 4.32405 4.41850 4.44637 4.60684 4.62708 4.73182 4.81157 4.84745 4.86312 4.97929 5.02032 5.04264 5.08136 5.16626 5.23031 5.28202 5.29856 5.33798 5.44141 5.46951 5.48838 5.52276 6.25765 6.44735 7.11533 7.33102 8.04715 8.29531 9.29156 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008793 B = 0.004114 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.553170 B = 6804.788702 C = 9157.354374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.053 4.053 4 C -0.183 4.183 5 C -0.159 4.159 6 C -0.053 4.053 7 C -0.299 4.299 8 C 0.590 3.410 9 O -0.567 6.567 10 N -0.702 5.702 11 C 0.178 3.822 12 H 0.061 0.939 13 C 0.149 3.851 14 N -0.744 5.744 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.291 1.291 21 H -0.296 1.296 22 H -0.266 1.266 23 C -0.167 4.167 24 C -0.160 4.160 25 C -0.184 4.184 26 S 0.211 5.789 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.402 0.598 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 -15.985 -8.770 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.303 4.303 5 C -0.189 4.189 6 C -0.087 4.087 7 C -0.419 4.419 8 C 0.378 3.622 9 O -0.449 6.449 10 N -0.350 5.350 11 C 0.074 3.926 12 H 0.080 0.920 13 C 0.023 3.977 14 N -0.387 5.387 15 C -0.377 4.377 16 H 0.098 0.902 17 C -0.264 4.264 18 N -0.618 5.618 19 Si 0.803 3.197 20 H -0.218 1.218 21 H -0.223 1.223 22 H -0.191 1.191 23 C -0.187 4.187 24 C -0.197 4.197 25 C -0.221 4.221 26 S 0.480 5.520 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.187 0.813 35 H 0.169 0.831 36 H 0.238 0.762 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.137 0.863 44 H 0.123 0.877 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.660 -15.957 -7.492 20.102 hybrid contribution 0.058 1.201 -0.878 1.489 sum -9.602 -14.756 -8.370 19.494 Atomic orbital electron populations 1.21768 0.94277 1.02384 1.02399 1.21538 0.96777 0.94641 1.02550 1.20396 0.85204 0.98992 1.04585 1.24657 1.02330 1.06252 0.97085 1.20116 0.91509 1.06445 1.00799 1.20921 0.97301 0.95973 0.94543 1.24544 0.96823 1.21432 0.99144 1.17207 0.87377 0.75290 0.82325 1.90693 1.42868 1.52572 1.58789 1.45815 1.09449 1.73791 1.05987 1.20641 0.82529 0.94795 0.94673 0.92046 1.21056 0.97264 0.85982 0.93424 1.42529 1.73006 1.15086 1.08079 1.19627 1.32003 0.97083 0.88962 0.90189 1.25562 1.02051 0.99032 0.99791 1.69842 1.47727 1.18370 1.25878 0.85142 0.76563 0.78546 0.79478 1.21787 1.22300 1.19073 1.22569 1.02310 0.95208 0.98583 1.22984 0.90117 1.03426 1.03171 1.23206 1.02280 1.00124 0.96489 1.83218 0.93586 1.67239 1.07997 0.92557 0.91814 0.91965 0.91246 0.92393 0.90347 0.88100 0.81268 0.83146 0.76247 0.94143 0.94066 0.79509 0.94099 0.85924 0.89936 0.86345 0.87720 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 3 C -0.05 -0.81 5.64 29.85 0.17 -0.64 16 4 C -0.18 -3.92 5.53 24.68 0.14 -3.78 16 5 C -0.16 -3.43 9.99 21.08 0.21 -3.22 16 6 C -0.05 -1.46 10.01 21.72 0.22 -1.24 16 7 C -0.30 -9.46 6.45 24.08 0.16 -9.30 16 8 C 0.59 21.71 7.11 86.42 0.61 22.32 16 9 O -0.57 -23.43 13.86 -4.36 -0.06 -23.49 16 10 N -0.70 -24.86 4.49 -446.60 -2.01 -26.86 16 11 C 0.18 6.34 2.43 44.99 0.11 6.44 16 12 H 0.06 2.53 7.33 -2.39 -0.02 2.52 16 13 C 0.15 5.89 5.80 86.38 0.50 6.39 16 14 N -0.74 -37.63 5.43 -343.47 -1.87 -39.49 16 15 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 18 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 19 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.17 -4.74 5.36 -10.79 -0.06 -4.80 16 24 C -0.16 -4.10 10.18 30.62 0.31 -3.79 16 25 C -0.18 -5.11 9.74 30.62 0.30 -4.81 16 26 S 0.21 5.55 22.10 -56.49 -1.25 4.30 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.40 13.85 7.72 -92.70 -0.72 13.13 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.12 3.04 8.11 -2.39 -0.02 3.02 16 42 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 43 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.09 3.11 5.01 -2.39 -0.01 3.10 16 Total: -1.00 -67.99 384.77 1.60 -66.39 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.40 Total: 45.44 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.87 Total: -14.96 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -3.59 Total: -125.47 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.06 Total: -23.49 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.25 Total: 4.30 kcal Total: -67.99 1.60 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754442342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.762 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds