Wall clock time and date at job start Sat Apr 11 2020 00:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47141 * 2 1 4 4 C 1.52997 * 109.47117 * 239.99879 * 2 1 3 5 5 C 1.50699 * 109.47335 * 119.99883 * 2 1 3 6 6 C 1.33823 * 124.52251 * 59.99889 * 5 2 1 7 7 C 1.37464 * 115.10255 * 180.02562 * 6 5 2 8 8 C 1.36655 * 113.29726 * 0.02562 * 7 6 5 9 9 C 1.46577 * 125.45706 * 179.97438 * 8 7 6 10 10 O 1.21710 * 120.00305 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00072 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00390 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46949 * 174.94667 * 12 11 9 14 14 N 1.46492 * 115.54845 * 80.39600 * 13 12 11 15 15 C 1.36939 * 120.00499 * 65.27579 * 14 13 12 16 16 H 1.07996 * 119.99575 * 354.96554 * 15 14 13 17 17 C 1.38810 * 120.00560 * 174.96414 * 15 14 13 18 18 N 1.31616 * 119.99546 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47107 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46644 * 299.99823 * 19 17 15 22 22 H 1.48501 * 109.47175 * 59.99686 * 19 17 15 23 23 C 1.52995 * 117.49615 * 226.06313 * 13 12 11 24 24 C 1.52996 * 117.49682 * 294.71967 * 13 12 11 25 25 S 1.70616 * 124.52483 * 240.35602 * 5 2 1 26 26 H 1.08998 * 109.47199 * 299.99907 * 1 2 3 27 27 H 1.09002 * 109.47243 * 60.00202 * 1 2 3 28 28 H 1.09006 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47272 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47217 * 300.00444 * 3 2 1 31 31 H 1.09007 * 109.47188 * 59.99799 * 3 2 1 32 32 H 1.09000 * 109.47707 * 300.00016 * 4 2 1 33 33 H 1.09002 * 109.47130 * 59.99849 * 4 2 1 34 34 H 1.09004 * 109.47045 * 179.97438 * 4 2 1 35 35 H 1.08000 * 122.44509 * 0.02562 * 6 5 2 36 36 H 1.08004 * 123.35619 * 180.02562 * 7 6 5 37 37 H 0.97006 * 119.99925 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.46746 * 54.94773 * 12 11 9 39 39 H 1.08994 * 109.47061 * 294.94862 * 12 11 9 40 40 H 0.97000 * 120.00014 * 245.27291 * 14 13 12 41 41 H 0.97009 * 120.00254 * 179.97438 * 18 17 15 42 42 H 1.08997 * 117.50148 * 215.00899 * 23 13 12 43 43 H 1.09010 * 117.49961 * 0.02562 * 23 13 12 44 44 H 1.08994 * 117.50449 * 359.97438 * 24 13 12 45 45 H 1.09009 * 117.49494 * 144.98169 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.7654 -1.9867 1.5315 7 6 2.3231 -2.4383 2.7039 8 6 3.0569 -1.4869 3.3550 9 6 3.7644 -1.6798 4.6241 10 8 3.7252 -2.7593 5.1848 11 7 4.4584 -0.6617 5.1703 12 6 5.1651 -0.8542 6.4391 13 6 5.9690 0.4045 6.7712 14 7 5.2049 1.5034 7.3666 15 6 4.6400 1.3526 8.6049 16 1 4.6880 0.3979 9.1076 17 6 4.0057 2.4266 9.2141 18 7 3.9477 3.5901 8.6016 19 14 3.2358 2.2209 10.9035 20 1 2.6258 3.5061 11.3293 21 1 2.1871 1.1711 10.8450 22 1 4.2820 1.8217 11.8790 23 6 7.4151 0.2173 7.2344 24 6 7.1241 0.7717 5.8376 25 16 3.0102 0.0077 2.4301 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.1563 -2.6159 0.8994 36 1 2.1942 -3.4448 3.0738 37 1 4.4900 0.1987 4.7233 38 1 5.8410 -1.7049 6.3530 39 1 4.4421 -1.0435 7.2325 40 1 5.0991 2.3380 6.8838 41 1 3.5042 4.3406 9.0271 42 1 7.7980 0.9118 7.9821 43 1 7.7939 -0.8026 7.3021 44 1 7.3117 0.1164 4.9871 45 1 7.3154 1.8311 5.6661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754534119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:31 Heat of formation + Delta-G solvation = 16.830899 kcal Electronic energy + Delta-G solvation = -24547.752997 eV Core-core repulsion = 21078.434028 eV Total energy + Delta-G solvation = -3469.318969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57444 -38.77707 -37.49268 -35.94168 -33.78436 -33.01684 -29.73922 -29.45365 -27.75078 -27.57881 -26.70546 -24.57379 -23.89376 -21.97314 -21.00815 -20.64040 -19.56658 -18.49451 -17.57042 -17.11669 -16.14356 -15.67074 -15.57346 -15.00296 -14.80353 -14.52554 -14.28358 -14.24127 -13.91113 -13.47933 -13.09803 -13.06076 -13.05209 -12.75618 -12.44951 -12.12821 -12.04704 -11.98161 -11.93363 -11.55815 -11.28348 -11.26580 -11.00513 -10.96163 -10.86903 -10.71219 -10.32863 -10.28847 -9.87822 -9.70621 -9.33996 -8.88721 -8.82756 -8.63145 -8.51760 -7.08363 -5.84068 -3.14843 0.51929 1.43471 1.87864 2.39285 3.37506 3.42498 3.45923 3.46689 3.47937 4.21400 4.42262 4.51248 4.59534 4.61377 4.93193 5.03243 5.21435 5.24184 5.28252 5.29082 5.29488 5.41744 5.43497 5.47408 5.53701 5.56516 5.62286 5.63425 5.78573 5.80164 5.86773 5.96726 6.00812 6.08919 6.12243 6.24846 6.32054 6.42414 6.55083 6.63712 6.74337 6.80664 7.68521 7.79000 8.33877 8.43337 9.45200 9.97997 10.33491 11.37711 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.003164 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.714877 B = 8846.827325 C = 9385.132970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.001 3.999 3 C -0.156 4.156 4 C -0.136 4.136 5 C -0.188 4.188 6 C -0.153 4.153 7 C -0.059 4.059 8 C -0.265 4.265 9 C 0.585 3.415 10 O -0.541 6.541 11 N -0.706 5.706 12 C 0.148 3.852 13 C 0.126 3.874 14 N -0.689 5.689 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.291 1.291 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.184 4.184 24 C -0.186 4.186 25 S 0.216 5.784 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.388 0.612 41 H 0.257 0.743 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -6.745 -20.981 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.001 4.001 3 C -0.214 4.214 4 C -0.194 4.194 5 C -0.308 4.308 6 C -0.183 4.183 7 C -0.092 4.092 8 C -0.386 4.386 9 C 0.370 3.630 10 O -0.420 6.420 11 N -0.355 5.355 12 C 0.022 3.978 13 C 0.032 3.968 14 N -0.329 5.329 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.225 4.225 24 C -0.224 4.224 25 S 0.486 5.514 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.223 0.777 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.963 -6.044 -20.126 21.105 hybrid contribution -1.135 -0.792 0.446 1.454 sum -3.098 -6.836 -19.680 21.062 Atomic orbital electron populations 1.21898 0.92949 1.02391 1.02271 1.19141 0.95960 0.94520 0.90484 1.22032 1.01689 0.94693 1.02975 1.21885 1.01443 1.00310 0.95731 1.24303 1.05401 0.99035 1.02082 1.19824 1.04688 0.95307 0.98524 1.20682 0.94792 1.00194 0.93501 1.24762 1.11609 0.99508 1.02703 1.16964 0.78593 0.84431 0.82990 1.90799 1.62842 1.25659 1.62725 1.45809 1.51291 1.13756 1.24660 1.21313 0.95523 0.96455 0.84464 1.20156 0.85887 0.91145 0.99629 1.41776 1.60263 1.12200 1.18616 1.19122 1.28491 0.96104 0.93316 0.90992 1.24751 1.01474 0.95531 0.98722 1.69648 1.48455 1.01200 1.38585 0.86255 0.79139 0.76681 0.84062 1.21670 1.21125 1.21118 1.23365 1.01219 1.01082 0.96854 1.23092 1.04085 1.01487 0.93737 1.83150 1.45459 1.11198 1.11600 0.92140 0.91960 0.92198 0.91863 0.91308 0.91704 0.92205 0.91982 0.92276 0.84272 0.83272 0.76769 0.91814 0.90373 0.77726 0.93359 0.88515 0.89882 0.89474 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.33 37.16 0.31 -0.69 16 2 C 0.00 0.01 0.90 -155.67 -0.14 -0.13 16 3 C -0.16 -1.19 7.52 37.15 0.28 -0.92 16 4 C -0.14 -0.92 8.33 37.16 0.31 -0.61 16 5 C -0.19 -1.94 4.97 -35.86 -0.18 -2.12 16 6 C -0.15 -1.62 9.18 -41.41 -0.38 -2.00 16 7 C -0.06 -0.76 10.01 -40.44 -0.40 -1.16 16 8 C -0.27 -3.88 6.45 -36.79 -0.24 -4.12 16 9 C 0.58 10.34 7.78 -12.90 -0.10 10.24 16 10 O -0.54 -11.17 16.84 5.18 0.09 -11.08 16 11 N -0.71 -12.14 5.51 -61.65 -0.34 -12.48 16 12 C 0.15 2.77 5.73 -4.04 -0.02 2.74 16 13 C 0.13 2.43 2.15 -131.83 -0.28 2.14 16 14 N -0.69 -16.52 5.49 -47.24 -0.26 -16.78 16 15 C -0.24 -6.47 9.56 -15.06 -0.14 -6.61 16 16 H 0.07 1.92 7.76 -52.49 -0.41 1.51 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 18 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.18 -3.21 10.11 -26.70 -0.27 -3.48 16 24 C -0.19 -2.98 10.14 -26.70 -0.27 -3.25 16 25 S 0.22 2.55 20.43 -107.50 -2.20 0.35 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 29 H 0.06 0.49 7.91 -51.93 -0.41 0.07 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.06 0.39 7.86 -51.93 -0.41 -0.02 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.14 1.17 7.90 -52.49 -0.41 0.76 16 36 H 0.15 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.40 6.35 7.59 -40.82 -0.31 6.04 16 38 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 39 H 0.08 1.68 7.73 -51.93 -0.40 1.28 16 40 H 0.39 9.83 8.04 -40.82 -0.33 9.50 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 43 H 0.08 1.28 8.08 -51.92 -0.42 0.86 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -31.01 386.93 -10.08 -41.08 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.27 Total: 12.69 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.63 Total: -10.30 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.13 Total: -55.83 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.20 Total: 0.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.01 -10.08 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754534119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.914 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds