Wall clock time and date at job start Sat Apr 11 2020 00:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47141 * 2 1 4 4 C 1.52997 * 109.47117 * 239.99879 * 2 1 3 5 5 C 1.50699 * 109.47335 * 119.99883 * 2 1 3 6 6 C 1.33823 * 124.52251 * 59.99889 * 5 2 1 7 7 C 1.37464 * 115.10255 * 180.02562 * 6 5 2 8 8 C 1.36655 * 113.29726 * 0.02562 * 7 6 5 9 9 C 1.46577 * 125.45706 * 179.97438 * 8 7 6 10 10 O 1.21710 * 120.00305 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00072 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00390 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46949 * 174.94667 * 12 11 9 14 14 N 1.46492 * 115.54845 * 80.39600 * 13 12 11 15 15 C 1.36939 * 120.00499 * 65.27579 * 14 13 12 16 16 H 1.07996 * 119.99575 * 354.96554 * 15 14 13 17 17 C 1.38810 * 120.00560 * 174.96414 * 15 14 13 18 18 N 1.31616 * 119.99546 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47107 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46644 * 299.99823 * 19 17 15 22 22 H 1.48501 * 109.47175 * 59.99686 * 19 17 15 23 23 C 1.52995 * 117.49615 * 226.06313 * 13 12 11 24 24 C 1.52996 * 117.49682 * 294.71967 * 13 12 11 25 25 S 1.70616 * 124.52483 * 240.35602 * 5 2 1 26 26 H 1.08998 * 109.47199 * 299.99907 * 1 2 3 27 27 H 1.09002 * 109.47243 * 60.00202 * 1 2 3 28 28 H 1.09006 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47272 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47217 * 300.00444 * 3 2 1 31 31 H 1.09007 * 109.47188 * 59.99799 * 3 2 1 32 32 H 1.09000 * 109.47707 * 300.00016 * 4 2 1 33 33 H 1.09002 * 109.47130 * 59.99849 * 4 2 1 34 34 H 1.09004 * 109.47045 * 179.97438 * 4 2 1 35 35 H 1.08000 * 122.44509 * 0.02562 * 6 5 2 36 36 H 1.08004 * 123.35619 * 180.02562 * 7 6 5 37 37 H 0.97006 * 119.99925 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.46746 * 54.94773 * 12 11 9 39 39 H 1.08994 * 109.47061 * 294.94862 * 12 11 9 40 40 H 0.97000 * 120.00014 * 245.27291 * 14 13 12 41 41 H 0.97009 * 120.00254 * 179.97438 * 18 17 15 42 42 H 1.08997 * 117.50148 * 215.00899 * 23 13 12 43 43 H 1.09010 * 117.49961 * 0.02562 * 23 13 12 44 44 H 1.08994 * 117.50449 * 359.97438 * 24 13 12 45 45 H 1.09009 * 117.49494 * 144.98169 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.7654 -1.9867 1.5315 7 6 2.3231 -2.4383 2.7039 8 6 3.0569 -1.4869 3.3550 9 6 3.7644 -1.6798 4.6241 10 8 3.7252 -2.7593 5.1848 11 7 4.4584 -0.6617 5.1703 12 6 5.1651 -0.8542 6.4391 13 6 5.9690 0.4045 6.7712 14 7 5.2049 1.5034 7.3666 15 6 4.6400 1.3526 8.6049 16 1 4.6880 0.3979 9.1076 17 6 4.0057 2.4266 9.2141 18 7 3.9477 3.5901 8.6016 19 14 3.2358 2.2209 10.9035 20 1 2.6258 3.5061 11.3293 21 1 2.1871 1.1711 10.8450 22 1 4.2820 1.8217 11.8790 23 6 7.4151 0.2173 7.2344 24 6 7.1241 0.7717 5.8376 25 16 3.0102 0.0077 2.4301 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.1563 -2.6159 0.8994 36 1 2.1942 -3.4448 3.0738 37 1 4.4900 0.1987 4.7233 38 1 5.8410 -1.7049 6.3530 39 1 4.4421 -1.0435 7.2325 40 1 5.0991 2.3380 6.8838 41 1 3.5042 4.3406 9.0271 42 1 7.7980 0.9118 7.9821 43 1 7.7939 -0.8026 7.3021 44 1 7.3117 0.1164 4.9871 45 1 7.3154 1.8311 5.6661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754534119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:31 Heat of formation + Delta-G solvation = -1.589522 kcal Electronic energy + Delta-G solvation = -24548.551766 eV Core-core repulsion = 21078.434028 eV Total energy + Delta-G solvation = -3470.117738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90408 -39.68385 -38.95567 -36.79037 -35.37468 -34.85347 -31.67123 -30.54690 -28.34615 -28.10625 -27.98180 -25.98670 -25.56854 -23.34093 -22.24507 -21.43129 -21.00354 -19.78724 -19.12574 -18.56935 -17.44002 -16.98545 -16.73505 -16.31275 -16.15447 -15.79933 -15.42430 -15.26884 -15.03986 -14.93300 -14.74802 -14.01336 -13.99754 -13.66247 -13.56714 -13.51166 -12.94247 -12.93545 -12.82991 -12.81035 -12.56569 -12.37185 -12.32960 -12.24685 -12.00794 -11.94089 -11.89889 -11.61634 -11.48781 -11.31159 -10.99134 -10.65738 -10.21651 -9.63750 -9.51802 -9.05672 -7.97061 -5.26270 -0.49671 0.46972 0.93939 1.39624 1.45476 1.47179 1.52994 2.04955 2.18017 2.51828 3.06436 3.36488 3.50549 3.62343 3.76903 3.85073 3.91230 4.02439 4.15431 4.25011 4.28267 4.40507 4.53368 4.69338 4.72492 4.77750 4.79726 4.88500 4.90109 4.94082 5.00693 5.01368 5.02369 5.08214 5.14962 5.18093 5.31031 5.33011 5.36038 5.39825 5.42662 5.44698 5.53548 6.25464 6.43105 7.06663 7.31744 8.03844 8.28253 9.25020 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.003164 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.714877 B = 8846.827325 C = 9385.132970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.001 4.001 3 C -0.159 4.159 4 C -0.134 4.134 5 C -0.172 4.172 6 C -0.158 4.158 7 C -0.050 4.050 8 C -0.308 4.308 9 C 0.583 3.417 10 O -0.580 6.580 11 N -0.703 5.703 12 C 0.159 3.841 13 C 0.097 3.903 14 N -0.699 5.699 15 C -0.234 4.234 16 H 0.069 0.931 17 C -0.067 4.067 18 N -0.963 5.963 19 Si 0.965 3.035 20 H -0.293 1.293 21 H -0.284 1.284 22 H -0.278 1.278 23 C -0.179 4.179 24 C -0.155 4.155 25 S 0.226 5.774 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.404 0.596 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -7.244 -23.337 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.217 4.217 4 C -0.192 4.192 5 C -0.292 4.292 6 C -0.187 4.187 7 C -0.085 4.085 8 C -0.428 4.428 9 C 0.371 3.629 10 O -0.463 6.463 11 N -0.352 5.352 12 C 0.033 3.967 13 C 0.005 3.995 14 N -0.337 5.337 15 C -0.366 4.366 16 H 0.087 0.913 17 C -0.259 4.259 18 N -0.613 5.613 19 Si 0.794 3.206 20 H -0.219 1.219 21 H -0.211 1.211 22 H -0.204 1.204 23 C -0.219 4.219 24 C -0.192 4.192 25 S 0.496 5.504 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.211 0.789 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.990 -6.563 -22.496 23.518 hybrid contribution -1.122 -0.676 1.038 1.672 sum -3.112 -7.240 -21.459 22.860 Atomic orbital electron populations 1.21914 0.92077 1.02887 1.02602 1.19306 0.96554 0.94581 0.89824 1.22074 1.01637 0.94565 1.03425 1.21888 1.01176 1.00654 0.95462 1.24763 1.03496 0.98923 1.02000 1.19992 1.04962 0.95749 0.98029 1.20904 0.93770 0.99911 0.93884 1.24550 1.13812 1.01748 1.02667 1.17381 0.78090 0.83733 0.83709 1.90759 1.64341 1.27026 1.64191 1.45756 1.51231 1.14084 1.24094 1.21062 0.94801 0.96637 0.84179 1.20328 0.86349 0.90394 1.02426 1.41808 1.61016 1.13047 1.17858 1.19376 1.27298 0.95654 0.94222 0.91291 1.25432 1.02984 0.95577 1.01952 1.69777 1.49991 1.01700 1.39837 0.85347 0.78342 0.76230 0.80664 1.21942 1.21089 1.20413 1.23373 0.98796 1.02269 0.97495 1.23164 1.00045 1.02200 0.93830 1.83092 1.45844 1.09835 1.11591 0.93350 0.90160 0.91654 0.92028 0.89460 0.92724 0.91687 0.90252 0.92737 0.81623 0.83424 0.76064 0.90452 0.93934 0.78880 0.93968 0.90098 0.87415 0.86595 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.33 71.98 0.60 -1.01 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.16 -2.08 7.52 71.98 0.54 -1.54 16 4 C -0.13 -1.38 8.33 71.98 0.60 -0.78 16 5 C -0.17 -3.21 4.97 24.68 0.12 -3.09 16 6 C -0.16 -3.03 9.18 21.08 0.19 -2.84 16 7 C -0.05 -1.27 10.01 21.72 0.22 -1.06 16 8 C -0.31 -8.99 6.45 24.08 0.16 -8.84 16 9 C 0.58 21.02 7.78 86.42 0.67 21.69 16 10 O -0.58 -24.68 16.84 -4.38 -0.07 -24.76 16 11 N -0.70 -24.40 5.51 -467.17 -2.57 -26.97 16 12 C 0.16 6.00 5.73 86.38 0.49 6.49 16 13 C 0.10 3.72 2.15 3.60 0.01 3.72 16 14 N -0.70 -33.98 5.49 -303.37 -1.67 -35.65 16 15 C -0.23 -12.83 9.56 84.03 0.80 -12.03 16 16 H 0.07 3.75 7.76 -2.91 -0.02 3.73 16 17 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.96 -57.59 13.06 21.65 0.28 -57.31 16 19 Si 0.96 46.52 29.55 68.60 2.03 48.55 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 C -0.18 -5.96 10.11 30.61 0.31 -5.65 16 24 C -0.15 -4.65 10.14 30.61 0.31 -4.34 16 25 S 0.23 5.15 20.43 -56.49 -1.15 3.99 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.71 7.86 -2.38 -0.02 0.69 16 29 H 0.06 0.82 7.91 -2.39 -0.02 0.80 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.83 7.90 -2.38 -0.02 0.81 16 32 H 0.06 0.62 7.86 -2.39 -0.02 0.60 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.17 2.28 7.90 -2.91 -0.02 2.26 16 36 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.40 12.92 7.59 -92.70 -0.70 12.21 16 38 H 0.08 2.69 7.94 -2.39 -0.02 2.67 16 39 H 0.04 1.90 7.73 -2.39 -0.02 1.88 16 40 H 0.38 19.54 8.04 -92.71 -0.75 18.80 16 41 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 42 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.11 3.05 8.08 -2.38 -0.02 3.03 16 44 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 Total: -1.00 -68.12 386.93 1.83 -66.29 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.46 Total: 38.49 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 5.45 Total: -12.64 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -3.96 Total: -119.93 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.07 Total: -24.76 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.15 Total: 3.99 kcal Total: -68.12 1.83 -66.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754534119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.702 kcal (2) G-P(sol) polarization free energy of solvation -68.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds