Wall clock time and date at job start Sat Apr 11 2020 00:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47173 * 2 1 4 4 C 1.37468 * 123.35606 * 265.21857 * 3 2 1 5 5 C 1.33821 * 115.10492 * 180.29705 * 4 3 2 6 6 S 1.70621 * 110.94994 * 359.72568 * 5 4 3 7 7 C 1.36651 * 123.34716 * 85.00392 * 3 2 1 8 8 C 1.46578 * 125.46072 * 359.97438 * 7 3 2 9 9 O 1.21707 * 119.99980 * 359.71664 * 8 7 3 10 10 N 1.34777 * 120.00028 * 179.72061 * 8 7 3 11 11 C 1.47019 * 125.65061 * 359.97119 * 10 8 7 12 12 C 1.54322 * 107.27223 * 181.07843 * 11 10 8 13 13 H 1.08995 * 110.72403 * 263.65428 * 12 11 10 14 14 C 1.52999 * 110.71656 * 140.55781 * 12 11 10 15 15 C 1.55154 * 102.94204 * 22.19795 * 12 11 10 16 16 H 1.08999 * 111.00353 * 82.56825 * 15 12 11 17 17 C 1.52999 * 111.00486 * 206.41955 * 15 12 11 18 18 N 1.46505 * 109.47057 * 178.64648 * 17 15 12 19 19 C 1.36935 * 119.99667 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00527 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00035 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99582 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00248 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47383 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47127 * 119.99599 * 23 21 19 26 26 H 1.48503 * 109.47042 * 239.99655 * 23 21 19 27 27 C 1.47426 * 125.64729 * 179.97438 * 10 8 7 28 28 H 1.09000 * 109.47087 * 299.99772 * 1 2 3 29 29 H 1.09002 * 109.47018 * 59.99490 * 1 2 3 30 30 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47040 * 240.00599 * 2 1 3 32 32 H 1.08993 * 109.47264 * 120.00677 * 2 1 3 33 33 H 1.08004 * 122.44868 * 0.02562 * 4 3 2 34 34 H 1.07994 * 124.52859 * 179.75127 * 5 4 3 35 35 H 1.09001 * 109.88389 * 300.50344 * 11 10 8 36 36 H 1.09003 * 109.87977 * 61.66684 * 11 10 8 37 37 H 1.08997 * 109.47290 * 61.46077 * 14 12 11 38 38 H 1.09000 * 109.46958 * 181.45398 * 14 12 11 39 39 H 1.09000 * 109.47467 * 301.45183 * 14 12 11 40 40 H 1.08993 * 109.47274 * 298.64896 * 17 15 12 41 41 H 1.09005 * 109.47002 * 58.65139 * 17 15 12 42 42 H 0.96994 * 120.00157 * 0.02562 * 18 17 15 43 43 H 0.97001 * 119.99867 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.36718 * 274.68923 * 27 10 8 45 45 H 1.09005 * 110.36600 * 37.01484 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3745 2.1015 -1.1442 5 6 2.8068 3.3533 -0.9523 6 16 2.7998 3.7537 0.7062 7 6 2.1890 2.1621 1.1372 8 6 1.8997 1.7024 2.4986 9 8 1.4781 0.5758 2.6838 10 7 2.1004 2.5273 3.5454 11 6 2.6036 3.9064 3.4654 12 6 2.6947 4.4453 4.9085 13 1 1.8049 5.0215 5.1620 14 6 3.9558 5.2922 5.0914 15 6 2.7753 3.1500 5.7588 16 1 3.7957 2.7682 5.7933 17 6 2.2322 3.3853 7.1696 18 7 2.2940 2.1355 7.9315 19 6 1.8582 2.1025 9.2292 20 1 1.4692 2.9978 9.6912 21 6 1.9172 0.9184 9.9513 22 7 2.3917 -0.1727 9.3884 23 14 1.3234 0.8735 11.7217 24 1 0.8408 2.2213 12.1164 25 1 0.2144 -0.1062 11.8472 26 1 2.4433 0.4697 12.6094 27 6 1.8518 2.1962 4.9603 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.3040 1.6569 -2.1260 34 1 3.1181 4.0212 -1.7418 35 1 3.5908 3.9146 3.0035 36 1 1.9148 4.5191 2.8837 37 1 3.9181 6.1499 4.4199 38 1 4.0132 5.6405 6.1227 39 1 4.8346 4.6895 4.8621 40 1 2.8337 4.1451 7.6685 41 1 1.1975 3.7230 7.1089 42 1 2.6437 1.3314 7.5167 43 1 2.4327 -1.0002 9.8928 44 1 0.8075 2.3779 5.2146 45 1 2.1163 1.1576 5.1589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754828616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:34 Heat of formation + Delta-G solvation = -0.732533 kcal Electronic energy + Delta-G solvation = -25107.933921 eV Core-core repulsion = 21637.853344 eV Total energy + Delta-G solvation = -3470.080577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23151 -38.82884 -37.31404 -34.69100 -33.04188 -32.74886 -31.44461 -30.06671 -28.68292 -26.59002 -25.89735 -24.81192 -23.15422 -22.47528 -21.35633 -20.67669 -19.97055 -18.30827 -18.11423 -17.05161 -16.23597 -15.96999 -15.51742 -15.04550 -14.66229 -14.28348 -14.19769 -13.91146 -13.82924 -13.66534 -13.20109 -13.16727 -12.93739 -12.82686 -12.51902 -12.33988 -12.27343 -12.02647 -11.94325 -11.58823 -11.38055 -11.14209 -10.97485 -10.87512 -10.79534 -10.59324 -10.42381 -10.38636 -9.97929 -9.76820 -9.65350 -9.01086 -8.87395 -8.75587 -8.40922 -6.91764 -5.74597 -3.04100 0.38077 1.33868 1.74548 2.23208 2.97625 3.20081 3.44933 3.50101 3.52743 4.38096 4.48797 4.58889 4.63850 4.78043 4.88116 5.00713 5.05059 5.22626 5.25466 5.33757 5.40566 5.45990 5.50288 5.58087 5.58658 5.66405 5.70597 5.79025 5.85719 5.96003 5.98599 6.02995 6.11477 6.14697 6.18052 6.24205 6.32028 6.37827 6.40337 6.47315 6.68921 6.82289 7.53700 7.71521 8.18501 8.43426 9.54842 10.11592 10.45882 11.48052 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.003091 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.360061 B = 9056.619818 C =10367.731698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.249 4.249 6 S 0.206 5.794 7 C -0.262 4.262 8 C 0.599 3.401 9 O -0.521 6.521 10 N -0.614 5.614 11 C 0.092 3.908 12 C -0.093 4.093 13 H 0.090 0.910 14 C -0.141 4.141 15 C -0.101 4.101 16 H 0.086 0.914 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.119 3.881 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.074 0.926 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 10.834 -23.111 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.037 4.037 4 C -0.177 4.177 5 C -0.386 4.386 6 S 0.476 5.524 7 C -0.382 4.382 8 C 0.388 3.612 9 O -0.399 6.399 10 N -0.348 5.348 11 C -0.033 4.033 12 C -0.112 4.112 13 H 0.108 0.892 14 C -0.199 4.199 15 C -0.120 4.120 16 H 0.105 0.895 17 C 0.038 3.962 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.003 4.003 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.931 11.575 -22.117 25.038 hybrid contribution -0.478 -1.436 -0.253 1.534 sum 1.453 10.139 -22.371 24.604 Atomic orbital electron populations 1.21599 0.94279 1.01837 1.01676 1.20419 0.96563 0.90565 1.03612 1.19514 0.96249 0.97463 0.90451 1.19885 1.04006 0.94291 0.99502 1.25544 1.07991 1.01477 1.03593 1.83356 1.59953 1.12055 0.97051 1.24430 1.16806 0.99526 0.97452 1.16528 0.78319 0.84343 0.82015 1.90829 1.46023 1.18457 1.84578 1.48387 1.65059 1.13804 1.07533 1.22258 0.99299 0.82948 0.98748 1.22189 1.00108 0.96723 0.92197 0.89208 1.21764 0.96365 0.99183 1.02562 1.22687 1.00136 0.93627 0.95590 0.89543 1.20573 0.97126 0.90676 0.87788 1.42369 1.76683 1.06996 1.11685 1.19243 1.34200 0.95302 0.88455 0.91123 1.24754 1.01939 0.95787 0.98440 1.69674 1.51749 1.00067 1.36421 0.86128 0.77950 0.77266 0.84891 1.20571 1.21860 1.21896 1.22353 0.99820 1.00955 0.77125 0.92133 0.93395 0.92282 0.91420 0.88607 0.84201 0.81805 0.90867 0.91094 0.92552 0.91440 0.92348 0.95725 0.96067 0.78187 0.93519 0.90801 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.77 37.16 0.36 -1.19 16 2 C -0.07 -0.85 5.50 -27.88 -0.15 -1.01 16 3 C -0.02 -0.26 5.16 -105.48 -0.54 -0.80 16 4 C -0.15 -1.39 9.96 -41.41 -0.41 -1.80 16 5 C -0.25 -2.11 10.92 29.18 0.32 -1.79 16 6 S 0.21 1.94 18.43 -107.50 -1.98 -0.04 16 7 C -0.26 -3.42 6.38 -36.79 -0.23 -3.65 16 8 C 0.60 9.59 7.81 -12.90 -0.10 9.49 16 9 O -0.52 -9.90 13.96 5.18 0.07 -9.83 16 10 N -0.61 -9.12 3.33 -172.08 -0.57 -9.69 16 11 C 0.09 1.04 4.76 -3.07 -0.01 1.02 16 12 C -0.09 -1.07 3.01 -88.79 -0.27 -1.33 16 13 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 14 C -0.14 -1.36 9.13 37.16 0.34 -1.02 16 15 C -0.10 -1.56 2.55 -88.46 -0.23 -1.79 16 16 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 17 C 0.17 3.18 5.71 -4.04 -0.02 3.15 16 18 N -0.73 -18.30 5.45 -59.91 -0.33 -18.63 16 19 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 C 0.12 2.00 6.08 -2.52 -0.02 1.99 16 28 H 0.06 0.82 7.58 -51.93 -0.39 0.43 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.10 1.37 6.33 -51.93 -0.33 1.04 16 33 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 36 H 0.07 0.70 6.99 -51.93 -0.36 0.34 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.38 10.21 7.53 -40.82 -0.31 9.90 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 45 H 0.09 1.69 8.04 -51.93 -0.42 1.27 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -32.50 371.74 -9.89 -42.39 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.17 Total: 6.47 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.22 Total: -6.06 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.17 Total: -56.02 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.98 Total: -0.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.50 -9.89 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.654 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds