Wall clock time and date at job start Sat Apr 11 2020 00:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47173 * 2 1 4 4 C 1.37468 * 123.35606 * 265.21857 * 3 2 1 5 5 C 1.33821 * 115.10492 * 180.29705 * 4 3 2 6 6 S 1.70621 * 110.94994 * 359.72568 * 5 4 3 7 7 C 1.36651 * 123.34716 * 85.00392 * 3 2 1 8 8 C 1.46578 * 125.46072 * 359.97438 * 7 3 2 9 9 O 1.21707 * 119.99980 * 359.71664 * 8 7 3 10 10 N 1.34777 * 120.00028 * 179.72061 * 8 7 3 11 11 C 1.47019 * 125.65061 * 359.97119 * 10 8 7 12 12 C 1.54322 * 107.27223 * 181.07843 * 11 10 8 13 13 H 1.08995 * 110.72403 * 263.65428 * 12 11 10 14 14 C 1.52999 * 110.71656 * 140.55781 * 12 11 10 15 15 C 1.55154 * 102.94204 * 22.19795 * 12 11 10 16 16 H 1.08999 * 111.00353 * 82.56825 * 15 12 11 17 17 C 1.52999 * 111.00486 * 206.41955 * 15 12 11 18 18 N 1.46505 * 109.47057 * 178.64648 * 17 15 12 19 19 C 1.36935 * 119.99667 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00527 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00035 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99582 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00248 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47383 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47127 * 119.99599 * 23 21 19 26 26 H 1.48503 * 109.47042 * 239.99655 * 23 21 19 27 27 C 1.47426 * 125.64729 * 179.97438 * 10 8 7 28 28 H 1.09000 * 109.47087 * 299.99772 * 1 2 3 29 29 H 1.09002 * 109.47018 * 59.99490 * 1 2 3 30 30 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47040 * 240.00599 * 2 1 3 32 32 H 1.08993 * 109.47264 * 120.00677 * 2 1 3 33 33 H 1.08004 * 122.44868 * 0.02562 * 4 3 2 34 34 H 1.07994 * 124.52859 * 179.75127 * 5 4 3 35 35 H 1.09001 * 109.88389 * 300.50344 * 11 10 8 36 36 H 1.09003 * 109.87977 * 61.66684 * 11 10 8 37 37 H 1.08997 * 109.47290 * 61.46077 * 14 12 11 38 38 H 1.09000 * 109.46958 * 181.45398 * 14 12 11 39 39 H 1.09000 * 109.47467 * 301.45183 * 14 12 11 40 40 H 1.08993 * 109.47274 * 298.64896 * 17 15 12 41 41 H 1.09005 * 109.47002 * 58.65139 * 17 15 12 42 42 H 0.96994 * 120.00157 * 0.02562 * 18 17 15 43 43 H 0.97001 * 119.99867 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.36718 * 274.68923 * 27 10 8 45 45 H 1.09005 * 110.36600 * 37.01484 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3745 2.1015 -1.1442 5 6 2.8068 3.3533 -0.9523 6 16 2.7998 3.7537 0.7062 7 6 2.1890 2.1621 1.1372 8 6 1.8997 1.7024 2.4986 9 8 1.4781 0.5758 2.6838 10 7 2.1004 2.5273 3.5454 11 6 2.6036 3.9064 3.4654 12 6 2.6947 4.4453 4.9085 13 1 1.8049 5.0215 5.1620 14 6 3.9558 5.2922 5.0914 15 6 2.7753 3.1500 5.7588 16 1 3.7957 2.7682 5.7933 17 6 2.2322 3.3853 7.1696 18 7 2.2940 2.1355 7.9315 19 6 1.8582 2.1025 9.2292 20 1 1.4692 2.9978 9.6912 21 6 1.9172 0.9184 9.9513 22 7 2.3917 -0.1727 9.3884 23 14 1.3234 0.8735 11.7217 24 1 0.8408 2.2213 12.1164 25 1 0.2144 -0.1062 11.8472 26 1 2.4433 0.4697 12.6094 27 6 1.8518 2.1962 4.9603 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.3040 1.6569 -2.1260 34 1 3.1181 4.0212 -1.7418 35 1 3.5908 3.9146 3.0035 36 1 1.9148 4.5191 2.8837 37 1 3.9181 6.1499 4.4199 38 1 4.0132 5.6405 6.1227 39 1 4.8346 4.6895 4.8621 40 1 2.8337 4.1451 7.6685 41 1 1.1975 3.7230 7.1089 42 1 2.6437 1.3314 7.5167 43 1 2.4327 -1.0002 9.8928 44 1 0.8075 2.3779 5.2146 45 1 2.1163 1.1576 5.1589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754828616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:33 Heat of formation + Delta-G solvation = -20.586302 kcal Electronic energy + Delta-G solvation = -25108.794845 eV Core-core repulsion = 21637.853344 eV Total energy + Delta-G solvation = -3470.941501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38735 -39.81532 -38.42497 -36.48264 -34.34972 -33.69000 -33.06840 -31.35652 -29.95813 -27.56879 -27.24108 -26.03033 -24.86313 -23.33753 -22.64948 -21.69218 -21.24331 -19.39822 -19.15907 -18.86430 -17.44467 -17.01359 -16.62797 -16.48639 -16.08896 -15.45732 -15.32396 -15.14486 -15.00284 -14.92437 -14.74273 -14.29400 -14.10998 -13.84943 -13.58251 -13.48479 -13.40928 -13.16871 -12.95036 -12.86163 -12.79232 -12.46736 -12.41483 -12.15891 -11.98389 -11.95014 -11.82916 -11.70845 -11.52954 -11.30265 -10.98308 -10.93922 -10.00105 -9.67945 -9.29205 -9.00455 -7.94851 -5.24333 -0.47153 0.53350 1.00083 1.39888 1.46783 1.48125 1.58130 1.82962 2.10659 2.55697 3.29698 3.39463 3.45041 3.69108 3.79488 3.89343 4.12447 4.14400 4.18225 4.30808 4.35019 4.43984 4.45491 4.49773 4.50608 4.56680 4.74688 4.76857 4.80701 4.83122 4.86763 5.03260 5.04473 5.08931 5.13164 5.16819 5.24254 5.28538 5.35081 5.42892 5.48888 5.51153 5.52808 6.26622 6.39061 6.99823 7.32717 8.08631 8.30350 9.29035 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.003091 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.360061 B = 9056.619818 C =10367.731698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.024 4.024 4 C -0.159 4.159 5 C -0.229 4.229 6 S 0.252 5.748 7 C -0.309 4.309 8 C 0.590 3.410 9 O -0.570 6.570 10 N -0.617 5.617 11 C 0.090 3.910 12 C -0.081 4.081 13 H 0.102 0.898 14 C -0.138 4.138 15 C -0.091 4.091 16 H 0.077 0.923 17 C 0.166 3.834 18 N -0.748 5.748 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.293 1.293 27 C 0.124 3.876 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.165 0.835 34 H 0.201 0.799 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.025 0.975 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.060 0.940 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 14.337 -25.370 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.114 4.114 3 C -0.040 4.040 4 C -0.189 4.189 5 C -0.366 4.366 6 S 0.522 5.478 7 C -0.428 4.428 8 C 0.381 3.619 9 O -0.451 6.451 10 N -0.349 5.349 11 C -0.033 4.033 12 C -0.100 4.100 13 H 0.120 0.880 14 C -0.195 4.195 15 C -0.111 4.111 16 H 0.096 0.904 17 C 0.040 3.960 18 N -0.391 5.391 19 C -0.373 4.373 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.220 1.220 27 C 0.001 3.999 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.182 0.818 34 H 0.218 0.782 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.504 15.170 -24.386 28.829 hybrid contribution -0.650 -2.456 0.335 2.562 sum 1.854 12.715 -24.050 27.268 Atomic orbital electron populations 1.21540 0.94186 1.02023 1.01047 1.20395 0.96697 0.91185 1.03083 1.19756 0.95655 0.97333 0.91285 1.20041 1.04546 0.94742 0.99551 1.26021 1.05369 1.01338 1.03902 1.83008 1.58527 1.08777 0.97500 1.24278 1.20058 1.02638 0.95855 1.17114 0.77518 0.83873 0.83429 1.90791 1.48239 1.20552 1.85562 1.48440 1.64944 1.15280 1.06236 1.22507 1.00631 0.81029 0.99085 1.22200 1.02011 0.94788 0.91008 0.88005 1.21770 0.94844 0.99747 1.03179 1.22506 0.98679 0.95844 0.94023 0.90447 1.20736 0.97618 0.88472 0.89174 1.42634 1.76416 1.08550 1.11485 1.19697 1.32654 0.95422 0.89548 0.90168 1.25619 1.03142 0.95639 1.02745 1.69850 1.53920 1.00548 1.37981 0.85054 0.76959 0.77765 0.79873 1.18601 1.22396 1.22049 1.22065 0.99336 0.99142 0.79331 0.95238 0.91277 0.91783 0.88858 0.92082 0.81765 0.78218 0.89208 0.88792 0.89416 0.91847 0.92480 0.94485 0.95662 0.79722 0.94146 0.92135 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.77 71.98 0.70 -2.35 16 2 C -0.07 -1.80 5.50 29.85 0.16 -1.63 16 3 C -0.02 -0.55 5.16 -20.42 -0.11 -0.66 16 4 C -0.16 -2.52 9.96 21.08 0.21 -2.31 16 5 C -0.23 -2.86 10.92 66.82 0.73 -2.13 16 6 S 0.25 3.91 18.43 -56.49 -1.04 2.87 16 7 C -0.31 -7.94 6.38 24.08 0.15 -7.79 16 8 C 0.59 19.95 7.81 86.42 0.68 20.62 16 9 O -0.57 -23.86 13.96 -4.37 -0.06 -23.92 16 10 N -0.62 -18.88 3.33 -816.55 -2.72 -21.60 16 11 C 0.09 1.87 4.76 86.73 0.41 2.29 16 12 C -0.08 -1.69 3.01 -9.61 -0.03 -1.72 16 13 H 0.10 1.95 8.04 -2.39 -0.02 1.93 16 14 C -0.14 -2.21 9.13 71.98 0.66 -1.56 16 15 C -0.09 -2.86 2.55 -9.40 -0.02 -2.88 16 16 H 0.08 2.58 8.04 -2.39 -0.02 2.56 16 17 C 0.17 6.39 5.71 86.38 0.49 6.88 16 18 N -0.75 -38.54 5.45 -343.44 -1.87 -40.41 16 19 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 22 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 23 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 C 0.12 4.47 6.08 86.86 0.53 5.00 16 28 H 0.03 0.85 7.58 -2.39 -0.02 0.84 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.69 8.12 -2.38 -0.02 1.67 16 32 H 0.06 1.91 6.33 -2.39 -0.02 1.90 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.09 1.59 6.51 -2.39 -0.02 1.57 16 36 H 0.09 1.56 6.99 -2.39 -0.02 1.54 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 0.97 8.10 -2.38 -0.02 0.95 16 42 H 0.37 20.84 7.53 -92.71 -0.70 20.14 16 43 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.06 2.29 8.00 -2.39 -0.02 2.27 16 45 H 0.04 1.97 8.04 -2.38 -0.02 1.95 16 Total: -1.00 -75.62 371.74 2.78 -72.84 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.28 Total: 27.73 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 5.88 Total: -5.24 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -4.31 Total: -123.36 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.04 Total: 2.87 kcal Total: -75.62 2.78 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.256 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds