Wall clock time and date at job start Sat Apr 11 2020 00:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47087 * 2 1 4 4 C 1.37476 * 123.34799 * 265.19906 * 3 2 1 5 5 C 1.33813 * 115.09988 * 180.26782 * 4 3 2 6 6 S 1.70622 * 110.95499 * 359.75402 * 5 4 3 7 7 C 1.36640 * 123.35442 * 84.99831 * 3 2 1 8 8 C 1.46588 * 125.46018 * 0.02562 * 7 3 2 9 9 O 1.21707 * 119.99580 * 5.52354 * 8 7 3 10 10 N 1.34769 * 120.00569 * 185.52339 * 8 7 3 11 11 C 1.47422 * 125.65071 * 175.26216 * 10 8 7 12 12 C 1.55130 * 104.93944 * 203.96779 * 11 10 8 13 13 H 1.09005 * 111.15806 * 205.13050 * 12 11 10 14 14 C 1.53001 * 110.93749 * 81.21639 * 12 11 10 15 15 C 1.55155 * 101.48929 * 323.21900 * 12 11 10 16 16 H 1.09000 * 110.72144 * 276.83629 * 15 12 11 17 17 C 1.52997 * 110.72096 * 153.73412 * 15 12 11 18 18 N 1.46497 * 109.47216 * 177.44270 * 17 15 12 19 19 C 1.36936 * 120.00270 * 180.27575 * 18 17 15 20 20 H 1.07999 * 119.99895 * 359.72432 * 19 18 17 21 21 C 1.38810 * 120.00128 * 179.72622 * 19 18 17 22 22 N 1.31621 * 119.99928 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46941 * 89.99860 * 23 21 19 25 25 H 1.48501 * 109.47169 * 210.00346 * 23 21 19 26 26 H 1.48511 * 109.46895 * 329.99991 * 23 21 19 27 27 C 1.47022 * 125.64533 * 355.21751 * 10 8 7 28 28 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47331 * 299.99908 * 1 2 3 30 30 H 1.08994 * 109.46781 * 60.00356 * 1 2 3 31 31 H 1.08998 * 109.47137 * 239.99576 * 2 1 3 32 32 H 1.09004 * 109.47291 * 119.99603 * 2 1 3 33 33 H 1.08001 * 122.44944 * 0.02562 * 4 3 2 34 34 H 1.07996 * 124.52365 * 179.76815 * 5 4 3 35 35 H 1.08993 * 110.36596 * 322.92992 * 11 10 8 36 36 H 1.08993 * 110.36771 * 85.14831 * 11 10 8 37 37 H 1.08998 * 109.46693 * 307.95805 * 14 12 11 38 38 H 1.09006 * 109.46936 * 67.95675 * 14 12 11 39 39 H 1.08994 * 109.47047 * 187.95332 * 14 12 11 40 40 H 1.09000 * 109.47147 * 57.44316 * 17 15 12 41 41 H 1.09002 * 109.46852 * 297.44612 * 17 15 12 42 42 H 0.97008 * 120.00136 * 0.02562 * 18 17 15 43 43 H 0.97008 * 119.99755 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.87993 * 59.55906 * 27 10 8 45 45 H 1.08996 * 109.88907 * 298.39566 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3749 2.1013 -1.1444 5 6 2.8065 3.3533 -0.9526 6 16 2.7992 3.7540 0.7059 7 6 2.1890 2.1623 1.1370 8 6 1.9005 1.7024 2.4986 9 8 1.5814 0.5444 2.6950 10 7 1.9886 2.5617 3.5331 11 6 1.6333 2.2617 4.9320 12 6 1.3135 3.6400 5.5679 13 1 1.4674 3.6208 6.6468 14 6 -0.1111 4.0820 5.2272 15 6 2.3596 4.5511 4.8730 16 1 3.3215 4.4919 5.3824 17 6 1.8661 5.9983 4.8188 18 7 2.8982 6.8439 4.2138 19 6 2.6817 8.1878 4.0647 20 1 1.7483 8.6236 4.3891 21 6 3.6619 8.9899 3.4967 22 7 4.7992 8.4586 3.1009 23 14 3.3669 10.8233 3.2940 24 1 3.8366 11.5374 4.5083 25 1 4.1139 11.3169 2.1093 26 1 1.9154 11.0729 3.1033 27 6 2.4560 3.9534 3.4535 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3046 1.6565 -2.1260 34 1 3.1176 4.0212 -1.7422 35 1 0.7583 1.6130 4.9704 36 1 2.4738 1.7945 5.4451 37 1 -0.2607 4.0264 4.1489 38 1 -0.8243 3.4265 5.7272 39 1 -0.2634 5.1078 5.5627 40 1 1.6557 6.3486 5.8293 41 1 0.9569 6.0498 4.2197 42 1 3.7365 6.4524 3.9221 43 1 5.4844 9.0192 2.7043 44 1 1.8227 4.5185 2.7696 45 1 3.4902 3.9782 3.1102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754828617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:36 Heat of formation + Delta-G solvation = 0.822328 kcal Electronic energy + Delta-G solvation = -25613.306110 eV Core-core repulsion = 22143.292957 eV Total energy + Delta-G solvation = -3470.013153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27146 -38.76708 -37.28251 -34.65500 -32.96615 -32.68717 -31.33861 -29.45819 -28.98421 -26.85331 -25.53462 -24.99817 -23.22932 -22.32424 -21.85472 -20.42483 -19.42606 -18.19473 -17.85264 -17.04080 -16.43007 -15.85615 -15.52552 -14.95057 -14.54896 -14.39943 -14.03416 -14.01130 -13.67441 -13.49411 -13.25228 -13.05863 -12.85359 -12.71760 -12.46037 -12.26396 -12.15762 -11.85407 -11.79912 -11.65116 -11.42310 -11.07805 -10.99789 -10.87285 -10.70578 -10.55376 -10.38026 -10.24328 -10.03448 -9.76320 -9.68760 -8.92320 -8.83795 -8.59082 -8.23716 -6.97701 -5.81077 -3.10058 0.61029 1.65047 2.07239 2.41594 3.01237 3.26355 3.40481 3.46266 3.47335 4.40170 4.52625 4.65237 4.84116 4.84967 4.96085 5.12041 5.24947 5.25969 5.35789 5.39529 5.45795 5.52786 5.55802 5.66185 5.70283 5.73207 5.78657 5.84810 5.87079 5.99028 6.00983 6.05260 6.11074 6.13282 6.22168 6.25823 6.34490 6.39959 6.44907 6.51358 6.64471 6.76880 7.53601 7.66311 8.18921 8.37280 9.49045 10.04901 10.39628 11.41478 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.004143 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.600976 B = 6756.214605 C = 8317.129834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.024 4.024 4 C -0.154 4.154 5 C -0.250 4.250 6 S 0.254 5.746 7 C -0.282 4.282 8 C 0.607 3.393 9 O -0.536 6.536 10 N -0.613 5.613 11 C 0.115 3.885 12 C -0.098 4.098 13 H 0.093 0.907 14 C -0.143 4.143 15 C -0.096 4.096 16 H 0.088 0.912 17 C 0.162 3.838 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.095 3.905 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.083 0.917 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -14.753 -3.284 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.040 4.040 4 C -0.185 4.185 5 C -0.388 4.388 6 S 0.526 5.474 7 C -0.402 4.402 8 C 0.397 3.603 9 O -0.416 6.416 10 N -0.346 5.346 11 C -0.008 4.008 12 C -0.118 4.118 13 H 0.111 0.889 14 C -0.200 4.200 15 C -0.115 4.115 16 H 0.107 0.893 17 C 0.034 3.966 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.028 4.028 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.183 0.817 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.450 -13.888 -2.455 15.508 hybrid contribution 0.035 -0.040 -1.364 1.365 sum -6.415 -13.929 -3.819 15.803 Atomic orbital electron populations 1.21597 0.94606 1.01445 1.01689 1.20400 0.96265 0.90980 1.03434 1.19408 0.96884 0.97148 0.90528 1.19811 1.05014 0.94356 0.99323 1.25702 1.07212 1.01331 1.04537 1.84280 1.57541 1.09396 0.96223 1.24431 1.18017 1.00658 0.97128 1.16517 0.77237 0.84391 0.82175 1.90751 1.49559 1.16758 1.84544 1.48355 1.65026 1.13112 1.08142 1.22318 1.00554 0.97242 0.80654 1.22414 0.95830 0.93442 1.00116 0.88858 1.21783 0.94601 1.01820 1.01842 1.22444 0.99529 0.96270 0.93276 0.89338 1.20736 0.92612 0.86627 0.96595 1.42375 1.16907 1.05141 1.73326 1.19196 1.00274 0.84090 1.33535 0.91188 1.24708 0.96387 0.97961 1.01651 1.69652 1.06549 1.34591 1.47244 0.86233 0.77306 0.85638 0.77268 1.21734 1.21794 1.20761 1.22286 1.00306 0.80841 0.99408 0.92552 0.92461 0.93241 0.91567 0.88717 0.84463 0.81739 0.90362 0.91371 0.92580 0.92859 0.91312 0.95657 0.95537 0.78319 0.93511 0.89936 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.83 37.16 0.37 -1.18 16 2 C -0.07 -0.87 5.54 -27.88 -0.15 -1.03 16 3 C -0.02 -0.32 5.16 -105.48 -0.54 -0.87 16 4 C -0.15 -1.87 9.96 -41.41 -0.41 -2.28 16 5 C -0.25 -3.11 10.92 29.18 0.32 -2.79 16 6 S 0.25 3.63 18.47 -107.50 -1.99 1.65 16 7 C -0.28 -4.22 6.38 -36.79 -0.23 -4.45 16 8 C 0.61 9.69 7.79 -12.90 -0.10 9.59 16 9 O -0.54 -9.35 14.30 5.18 0.07 -9.27 16 10 N -0.61 -8.98 3.32 -171.96 -0.57 -9.55 16 11 C 0.11 1.44 6.35 -2.41 -0.02 1.42 16 12 C -0.10 -1.17 3.56 -88.35 -0.31 -1.49 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.14 -1.68 8.16 37.16 0.30 -1.38 16 15 C -0.10 -1.41 2.84 -88.78 -0.25 -1.66 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 17 C 0.16 2.95 4.43 -4.04 -0.02 2.93 16 18 N -0.73 -17.18 5.48 -59.91 -0.33 -17.51 16 19 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 23 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.10 1.44 4.27 -3.06 -0.01 1.43 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.09 1.32 6.20 -51.93 -0.32 1.00 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.83 6.79 -51.93 -0.35 0.47 16 40 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.03 0.49 6.79 -51.93 -0.35 0.14 16 42 H 0.38 9.42 7.60 -40.82 -0.31 9.11 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.08 1.34 6.28 -51.92 -0.33 1.01 16 45 H 0.08 1.19 7.14 -51.93 -0.37 0.82 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -30.17 368.11 -9.92 -40.09 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.04 Total: 7.25 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.32 Total: -8.67 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.17 Total: -53.25 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.99 Total: 1.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.17 -9.92 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.911 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds