Wall clock time and date at job start Sat Apr 11 2020 00:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47087 * 2 1 4 4 C 1.37476 * 123.34799 * 265.19906 * 3 2 1 5 5 C 1.33813 * 115.09988 * 180.26782 * 4 3 2 6 6 S 1.70622 * 110.95499 * 359.75402 * 5 4 3 7 7 C 1.36640 * 123.35442 * 84.99831 * 3 2 1 8 8 C 1.46588 * 125.46018 * 0.02562 * 7 3 2 9 9 O 1.21707 * 119.99580 * 5.52354 * 8 7 3 10 10 N 1.34769 * 120.00569 * 185.52339 * 8 7 3 11 11 C 1.47422 * 125.65071 * 175.26216 * 10 8 7 12 12 C 1.55130 * 104.93944 * 203.96779 * 11 10 8 13 13 H 1.09005 * 111.15806 * 205.13050 * 12 11 10 14 14 C 1.53001 * 110.93749 * 81.21639 * 12 11 10 15 15 C 1.55155 * 101.48929 * 323.21900 * 12 11 10 16 16 H 1.09000 * 110.72144 * 276.83629 * 15 12 11 17 17 C 1.52997 * 110.72096 * 153.73412 * 15 12 11 18 18 N 1.46497 * 109.47216 * 177.44270 * 17 15 12 19 19 C 1.36936 * 120.00270 * 180.27575 * 18 17 15 20 20 H 1.07999 * 119.99895 * 359.72432 * 19 18 17 21 21 C 1.38810 * 120.00128 * 179.72622 * 19 18 17 22 22 N 1.31621 * 119.99928 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46941 * 89.99860 * 23 21 19 25 25 H 1.48501 * 109.47169 * 210.00346 * 23 21 19 26 26 H 1.48511 * 109.46895 * 329.99991 * 23 21 19 27 27 C 1.47022 * 125.64533 * 355.21751 * 10 8 7 28 28 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47331 * 299.99908 * 1 2 3 30 30 H 1.08994 * 109.46781 * 60.00356 * 1 2 3 31 31 H 1.08998 * 109.47137 * 239.99576 * 2 1 3 32 32 H 1.09004 * 109.47291 * 119.99603 * 2 1 3 33 33 H 1.08001 * 122.44944 * 0.02562 * 4 3 2 34 34 H 1.07996 * 124.52365 * 179.76815 * 5 4 3 35 35 H 1.08993 * 110.36596 * 322.92992 * 11 10 8 36 36 H 1.08993 * 110.36771 * 85.14831 * 11 10 8 37 37 H 1.08998 * 109.46693 * 307.95805 * 14 12 11 38 38 H 1.09006 * 109.46936 * 67.95675 * 14 12 11 39 39 H 1.08994 * 109.47047 * 187.95332 * 14 12 11 40 40 H 1.09000 * 109.47147 * 57.44316 * 17 15 12 41 41 H 1.09002 * 109.46852 * 297.44612 * 17 15 12 42 42 H 0.97008 * 120.00136 * 0.02562 * 18 17 15 43 43 H 0.97008 * 119.99755 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.87993 * 59.55906 * 27 10 8 45 45 H 1.08996 * 109.88907 * 298.39566 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3749 2.1013 -1.1444 5 6 2.8065 3.3533 -0.9526 6 16 2.7992 3.7540 0.7059 7 6 2.1890 2.1623 1.1370 8 6 1.9005 1.7024 2.4986 9 8 1.5814 0.5444 2.6950 10 7 1.9886 2.5617 3.5331 11 6 1.6333 2.2617 4.9320 12 6 1.3135 3.6400 5.5679 13 1 1.4674 3.6208 6.6468 14 6 -0.1111 4.0820 5.2272 15 6 2.3596 4.5511 4.8730 16 1 3.3215 4.4919 5.3824 17 6 1.8661 5.9983 4.8188 18 7 2.8982 6.8439 4.2138 19 6 2.6817 8.1878 4.0647 20 1 1.7483 8.6236 4.3891 21 6 3.6619 8.9899 3.4967 22 7 4.7992 8.4586 3.1009 23 14 3.3669 10.8233 3.2940 24 1 3.8366 11.5374 4.5083 25 1 4.1139 11.3169 2.1093 26 1 1.9154 11.0729 3.1033 27 6 2.4560 3.9534 3.4535 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3046 1.6565 -2.1260 34 1 3.1176 4.0212 -1.7422 35 1 0.7583 1.6130 4.9704 36 1 2.4738 1.7945 5.4451 37 1 -0.2607 4.0264 4.1489 38 1 -0.8243 3.4265 5.7272 39 1 -0.2634 5.1078 5.5627 40 1 1.6557 6.3486 5.8293 41 1 0.9569 6.0498 4.2197 42 1 3.7365 6.4524 3.9221 43 1 5.4844 9.0192 2.7043 44 1 1.8227 4.5185 2.7696 45 1 3.4902 3.9782 3.1102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754828617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:36 Heat of formation + Delta-G solvation = -15.893932 kcal Electronic energy + Delta-G solvation = -25614.030982 eV Core-core repulsion = 22143.292957 eV Total energy + Delta-G solvation = -3470.738024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44160 -39.87235 -38.44779 -36.36693 -34.29706 -33.66394 -32.98874 -30.67708 -30.32034 -27.89434 -27.05811 -26.11304 -24.85705 -23.37521 -23.10065 -21.57991 -20.65620 -19.37379 -18.95877 -18.87705 -17.59192 -17.05891 -16.67102 -16.59110 -15.80984 -15.50723 -15.36289 -15.29992 -14.98524 -14.82384 -14.49151 -14.29439 -14.00842 -13.87483 -13.76589 -13.36277 -13.21885 -13.10152 -13.03273 -12.81927 -12.78251 -12.67643 -12.37532 -12.14818 -11.99559 -11.87445 -11.73797 -11.56566 -11.47406 -11.33938 -10.93877 -10.86003 -9.97918 -9.68421 -9.34538 -8.93436 -7.89805 -5.17509 -0.46432 0.56532 1.03320 1.37923 1.50910 1.51237 1.59313 1.87469 2.09990 2.59455 3.28664 3.42239 3.48767 3.71956 3.81389 3.88469 4.13386 4.16318 4.17610 4.30729 4.34546 4.45978 4.50371 4.52773 4.55006 4.67350 4.75861 4.77588 4.79849 4.87489 4.89710 5.01295 5.02497 5.07446 5.10262 5.21384 5.24799 5.30184 5.31190 5.44278 5.49115 5.51744 5.56378 6.32123 6.33723 6.98715 7.39736 8.14453 8.37914 9.33219 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.004143 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.600976 B = 6756.214605 C = 8317.129834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.022 4.022 4 C -0.152 4.152 5 C -0.241 4.241 6 S 0.211 5.789 7 C -0.305 4.305 8 C 0.601 3.399 9 O -0.557 6.557 10 N -0.613 5.613 11 C 0.112 3.888 12 C -0.085 4.085 13 H 0.120 0.880 14 C -0.141 4.141 15 C -0.091 4.091 16 H 0.088 0.912 17 C 0.165 3.835 18 N -0.743 5.743 19 C -0.240 4.240 20 H 0.075 0.925 21 C -0.069 4.069 22 N -0.965 5.965 23 Si 0.964 3.036 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.271 1.271 27 C 0.105 3.895 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.169 0.831 34 H 0.187 0.813 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.070 0.930 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -15.365 -3.623 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 C -0.039 4.039 4 C -0.182 4.182 5 C -0.378 4.378 6 S 0.482 5.518 7 C -0.424 4.424 8 C 0.392 3.608 9 O -0.439 6.439 10 N -0.345 5.345 11 C -0.010 4.010 12 C -0.104 4.104 13 H 0.138 0.862 14 C -0.198 4.198 15 C -0.110 4.110 16 H 0.107 0.893 17 C 0.039 3.961 18 N -0.386 5.386 19 C -0.372 4.372 20 H 0.093 0.907 21 C -0.261 4.261 22 N -0.616 5.616 23 Si 0.794 3.206 24 H -0.217 1.217 25 H -0.224 1.224 26 H -0.196 1.196 27 C -0.019 4.019 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.187 0.813 34 H 0.205 0.795 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.554 -14.505 -2.758 16.585 hybrid contribution 0.312 0.078 -1.286 1.326 sum -7.242 -14.427 -4.044 16.641 Atomic orbital electron populations 1.21554 0.93977 1.02300 1.00990 1.20436 0.96727 0.90110 1.03720 1.19800 0.95731 0.97746 0.90616 1.20108 1.03972 0.94007 1.00138 1.25956 1.06482 1.01871 1.03518 1.84421 1.58757 1.10083 0.98572 1.24460 1.19722 1.01002 0.97264 1.16738 0.76999 0.84274 0.82819 1.90728 1.50771 1.17430 1.84976 1.48396 1.64601 1.12654 1.08876 1.22482 1.01162 0.97724 0.79612 1.22420 0.94858 0.91853 1.01259 0.86159 1.21767 0.94980 1.02216 1.00872 1.22339 1.00482 0.94651 0.93537 0.89318 1.20830 0.91319 0.87858 0.96119 1.42560 1.17670 1.04837 1.73567 1.19571 1.00066 0.85542 1.32033 0.90733 1.25420 0.96505 1.01756 1.02467 1.69796 1.07351 1.35642 1.48767 0.85278 0.77502 0.81151 0.76666 1.21671 1.22443 1.19597 1.22101 0.99364 0.81099 0.99330 0.90960 0.94971 0.92019 0.88867 0.90762 0.81321 0.79532 0.89956 0.90336 0.94390 0.90730 0.91546 0.95024 0.95492 0.79329 0.94145 0.91248 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.83 71.98 0.71 -2.10 16 2 C -0.07 -1.63 5.54 29.85 0.17 -1.47 16 3 C -0.02 -0.59 5.16 -20.42 -0.11 -0.69 16 4 C -0.15 -3.36 9.96 21.08 0.21 -3.15 16 5 C -0.24 -5.68 10.92 66.81 0.73 -4.95 16 6 S 0.21 6.16 18.47 -56.49 -1.04 5.12 16 7 C -0.30 -9.21 6.38 24.08 0.15 -9.06 16 8 C 0.60 19.52 7.79 86.42 0.67 20.19 16 9 O -0.56 -19.68 14.30 -4.37 -0.06 -19.74 16 10 N -0.61 -18.06 3.32 -816.17 -2.71 -20.77 16 11 C 0.11 2.68 6.35 86.93 0.55 3.24 16 12 C -0.08 -1.87 3.56 -9.32 -0.03 -1.90 16 13 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 14 C -0.14 -3.10 8.16 71.98 0.59 -2.51 16 15 C -0.09 -2.62 2.84 -9.60 -0.03 -2.65 16 16 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 17 C 0.17 5.93 4.43 86.38 0.38 6.31 16 18 N -0.74 -35.09 5.48 -343.46 -1.88 -36.97 16 19 C -0.24 -12.74 9.99 84.03 0.84 -11.90 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.96 -56.64 13.06 21.65 0.28 -56.36 16 23 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.11 3.24 4.27 86.73 0.37 3.61 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.03 0.84 7.87 -2.39 -0.02 0.82 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 32 H 0.07 2.05 6.20 -2.39 -0.01 2.04 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.08 1.94 8.00 -2.39 -0.02 1.92 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 0.97 7.92 -2.39 -0.02 0.95 16 38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.07 1.49 6.79 -2.39 -0.02 1.47 16 40 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 41 H 0.03 0.99 6.79 -2.39 -0.02 0.97 16 42 H 0.37 18.83 7.60 -92.70 -0.70 18.13 16 43 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 44 H 0.07 2.34 6.28 -2.39 -0.01 2.33 16 45 H 0.06 2.12 7.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.02 368.11 2.57 -62.45 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.28 Total: 29.93 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.67 Total: -10.36 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -4.31 Total: -114.10 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -1.04 Total: 5.12 kcal Total: -65.02 2.57 -62.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.552 kcal (2) G-P(sol) polarization free energy of solvation -65.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds