Wall clock time and date at job start Sat Apr 11 2020 00:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46973 * 2 1 4 4 C 1.37480 * 123.35454 * 265.22083 * 3 2 1 5 5 C 1.33807 * 115.10439 * 180.29908 * 4 3 2 6 6 S 1.70623 * 110.95484 * 359.71873 * 5 4 3 7 7 C 1.36648 * 123.35326 * 84.99887 * 3 2 1 8 8 C 1.46582 * 125.45780 * 359.97438 * 7 3 2 9 9 O 1.21694 * 119.99962 * 7.36964 * 8 7 3 10 10 N 1.34778 * 119.99819 * 187.36630 * 8 7 3 11 11 C 1.48145 * 127.84211 * 357.09551 * 10 8 7 12 12 C 1.54384 * 104.61818 * 140.38644 * 11 10 8 13 13 H 1.08999 * 110.34076 * 142.74019 * 12 11 10 14 14 C 1.53002 * 110.34161 * 264.99114 * 12 11 10 15 15 C 1.54277 * 104.96410 * 23.86654 * 12 11 10 16 16 H 1.08999 * 110.34688 * 118.97625 * 15 12 11 17 17 C 1.53001 * 110.34431 * 241.13173 * 15 12 11 18 18 N 1.46506 * 109.47025 * 183.52338 * 17 15 12 19 19 C 1.36937 * 119.99596 * 180.27015 * 18 17 15 20 20 H 1.07999 * 120.00355 * 359.73147 * 19 18 17 21 21 C 1.38807 * 119.99798 * 179.72148 * 19 18 17 22 22 N 1.31622 * 120.00316 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46822 * 60.00334 * 23 21 19 25 25 H 1.48501 * 109.46893 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47028 * 300.00413 * 23 21 19 27 27 C 1.48423 * 127.81981 * 177.09212 * 10 8 7 28 28 H 1.09000 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46910 * 300.00019 * 1 2 3 30 30 H 1.09002 * 109.47134 * 59.99973 * 1 2 3 31 31 H 1.08996 * 109.47022 * 240.00141 * 2 1 3 32 32 H 1.08994 * 109.46867 * 119.99426 * 2 1 3 33 33 H 1.08006 * 122.44391 * 359.97438 * 4 3 2 34 34 H 1.08004 * 124.52294 * 179.74697 * 5 4 3 35 35 H 1.08999 * 110.40659 * 21.59693 * 11 10 8 36 36 H 1.09001 * 110.40275 * 259.17333 * 11 10 8 37 37 H 1.09002 * 109.46700 * 175.53590 * 14 12 11 38 38 H 1.08993 * 109.47551 * 295.54341 * 14 12 11 39 39 H 1.09001 * 109.46518 * 55.54281 * 14 12 11 40 40 H 1.09001 * 109.47166 * 63.52091 * 17 15 12 41 41 H 1.08998 * 109.46457 * 303.52102 * 17 15 12 42 42 H 0.97000 * 120.00309 * 0.02562 * 18 17 15 43 43 H 0.96998 * 120.00175 * 180.02562 * 22 21 19 44 44 H 1.08991 * 110.44712 * 100.87416 * 27 10 8 45 45 H 1.09003 * 110.49296 * 338.35639 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3745 2.1016 -1.1444 5 6 2.8067 3.3533 -0.9525 6 16 2.7997 3.7538 0.7060 7 6 2.1889 2.1623 1.1371 8 6 1.8995 1.7027 2.4985 9 8 1.6123 0.5372 2.6991 10 7 1.9516 2.5708 3.5282 11 6 2.3365 4.0009 3.4926 12 6 1.3535 4.6932 4.4611 13 1 1.8599 5.4850 5.0131 14 6 0.1590 5.2601 3.6914 15 6 0.8917 3.5793 5.4236 16 1 1.1696 3.8248 6.4485 17 6 -0.6213 3.3781 5.3174 18 7 -1.0507 2.3773 6.2973 19 6 -2.3716 2.0265 6.3837 20 1 -3.0974 2.4908 5.7325 21 6 -2.7777 1.0741 7.3082 22 7 -1.8933 0.5084 8.1021 23 14 -4.5795 0.5950 7.4257 24 1 -5.0314 0.0454 6.1223 25 1 -4.7503 -0.4335 8.4831 26 1 -5.3890 1.7928 7.7653 27 6 1.6361 2.3104 4.9549 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3047 1.6566 -2.1260 34 1 3.1180 4.0212 -1.7421 35 1 2.2219 4.4004 2.4849 36 1 3.3626 4.1270 3.8380 37 1 -0.5629 5.6748 4.3950 38 1 0.5008 6.0448 3.0166 39 1 -0.3121 4.4643 3.1143 40 1 -0.8727 3.0352 4.3137 41 1 -1.1281 4.3223 5.5164 42 1 -0.3990 1.9605 6.8825 43 1 -2.1770 -0.1575 8.7479 44 1 2.5526 2.1737 5.5287 45 1 0.9930 1.4355 5.0501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754828618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:39 Heat of formation + Delta-G solvation = 11.398135 kcal Electronic energy + Delta-G solvation = -25771.143018 eV Core-core repulsion = 22301.588466 eV Total energy + Delta-G solvation = -3469.554551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20350 -38.84423 -37.28673 -34.57421 -32.89784 -32.65031 -31.18505 -30.03675 -28.58982 -26.89773 -25.51639 -24.82279 -23.18057 -22.39819 -21.96911 -20.68172 -19.04307 -18.29900 -18.02714 -16.92918 -16.37665 -15.99777 -15.61663 -14.85307 -14.58438 -14.40400 -14.06617 -13.81255 -13.69814 -13.56873 -13.52140 -13.01646 -12.84659 -12.71821 -12.44263 -12.21729 -12.12438 -11.97105 -11.80825 -11.57143 -11.30909 -10.96341 -10.90716 -10.80947 -10.74126 -10.51942 -10.34558 -10.17617 -9.90797 -9.68922 -9.61102 -8.94739 -8.80411 -8.64565 -8.45541 -6.86239 -5.71083 -2.99444 0.44816 1.38013 1.77740 2.31258 2.98657 3.28961 3.48303 3.52545 3.53588 4.45953 4.50697 4.65064 4.70230 4.88429 4.92139 5.07723 5.11191 5.30324 5.35348 5.38666 5.43993 5.50401 5.56418 5.63145 5.67191 5.73708 5.77866 5.82441 5.92936 6.01291 6.05062 6.09443 6.11711 6.20647 6.25625 6.33804 6.41802 6.47186 6.48945 6.54583 6.78581 6.92849 7.63960 7.74455 8.26457 8.47764 9.58824 10.16109 10.50527 11.51808 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.003879 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.323695 B = 7217.115234 C = 8296.249267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C -0.019 4.019 4 C -0.145 4.145 5 C -0.253 4.253 6 S 0.203 5.797 7 C -0.260 4.260 8 C 0.607 3.393 9 O -0.517 6.517 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.095 4.095 13 H 0.087 0.913 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.089 0.911 17 C 0.162 3.838 18 N -0.733 5.733 19 C -0.238 4.238 20 H 0.068 0.932 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.113 3.887 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.423 9.730 -17.417 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.034 4.034 4 C -0.177 4.177 5 C -0.389 4.389 6 S 0.472 5.528 7 C -0.380 4.380 8 C 0.396 3.604 9 O -0.394 6.394 10 N -0.351 5.351 11 C -0.025 4.025 12 C -0.115 4.115 13 H 0.105 0.895 14 C -0.205 4.205 15 C -0.126 4.126 16 H 0.107 0.893 17 C 0.035 3.965 18 N -0.377 5.377 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.009 4.009 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.042 0.958 42 H 0.216 0.784 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.497 10.337 -16.636 23.786 hybrid contribution -1.083 -1.459 -0.780 1.977 sum 12.414 8.878 -17.416 23.157 Atomic orbital electron populations 1.21617 0.94137 1.01988 1.01829 1.20465 0.96637 0.90578 1.03723 1.19525 0.95983 0.97449 0.90447 1.19880 1.04022 0.94303 0.99447 1.25694 1.07733 1.01261 1.04256 1.83218 1.60546 1.11949 0.97087 1.24389 1.16925 0.99281 0.97420 1.16454 0.77425 0.84748 0.81778 1.90831 1.48555 1.16307 1.83739 1.48841 1.67174 1.10401 1.08673 1.22759 0.98972 0.81423 0.99357 1.22065 0.96146 0.97423 0.95856 0.89462 1.21933 0.97816 1.00603 1.00196 1.22374 0.97763 0.93356 0.99094 0.89295 1.20797 0.89691 0.92757 0.93262 1.42390 1.06842 1.46841 1.41608 1.19140 0.84882 1.17623 1.15312 0.91405 1.24711 0.97570 0.99553 0.98972 1.69641 1.32516 1.31109 1.24911 0.86290 0.85023 0.77848 0.77173 1.21291 1.21680 1.21328 1.22551 0.99551 1.00165 0.78622 0.92183 0.92083 0.93328 0.91439 0.88371 0.84283 0.81951 0.90677 0.90391 0.91315 0.93103 0.92036 0.96160 0.95808 0.78352 0.93499 0.91345 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.86 37.16 0.37 -1.46 16 2 C -0.07 -0.97 5.55 -27.88 -0.15 -1.12 16 3 C -0.02 -0.25 5.16 -105.47 -0.54 -0.79 16 4 C -0.15 -1.51 9.96 -41.41 -0.41 -1.92 16 5 C -0.25 -2.32 10.92 29.18 0.32 -2.00 16 6 S 0.20 2.02 18.70 -107.50 -2.01 0.01 16 7 C -0.26 -3.60 6.39 -36.79 -0.24 -3.84 16 8 C 0.61 10.22 7.86 -12.90 -0.10 10.12 16 9 O -0.52 -10.45 14.42 5.19 0.07 -10.38 16 10 N -0.62 -9.33 3.32 -170.65 -0.57 -9.90 16 11 C 0.10 1.12 5.88 -2.41 -0.01 1.11 16 12 C -0.09 -1.11 3.66 -89.23 -0.33 -1.43 16 13 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.15 -1.76 7.92 37.16 0.29 -1.46 16 15 C -0.11 -1.64 3.11 -89.22 -0.28 -1.92 16 16 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.16 3.25 4.41 -4.04 -0.02 3.23 16 18 N -0.73 -18.70 5.16 -59.91 -0.31 -19.01 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 23 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.11 1.86 6.44 -2.25 -0.01 1.84 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.10 1.50 6.17 -51.93 -0.32 1.18 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.08 0.77 3.76 -23.74 -0.09 0.68 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.85 6.71 -51.93 -0.35 0.50 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.86 6.90 -51.93 -0.36 0.50 16 40 H 0.02 0.44 7.01 -51.93 -0.36 0.08 16 41 H 0.02 0.48 6.58 -51.93 -0.34 0.14 16 42 H 0.38 10.19 7.49 -40.82 -0.31 9.89 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 2.12 7.22 -51.93 -0.37 1.74 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -33.32 365.31 -9.66 -42.97 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.69 Total: 7.87 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.36 Total: -7.07 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.15 Total: -56.84 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.01 Total: 0.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.32 -9.66 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.372 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds