Wall clock time and date at job start Sat Apr 11 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46973 * 2 1 4 4 C 1.37480 * 123.35454 * 265.22083 * 3 2 1 5 5 C 1.33807 * 115.10439 * 180.29908 * 4 3 2 6 6 S 1.70623 * 110.95484 * 359.71873 * 5 4 3 7 7 C 1.36648 * 123.35326 * 84.99887 * 3 2 1 8 8 C 1.46582 * 125.45780 * 359.97438 * 7 3 2 9 9 O 1.21694 * 119.99962 * 7.36964 * 8 7 3 10 10 N 1.34778 * 119.99819 * 187.36630 * 8 7 3 11 11 C 1.48145 * 127.84211 * 357.09551 * 10 8 7 12 12 C 1.54384 * 104.61818 * 140.38644 * 11 10 8 13 13 H 1.08999 * 110.34076 * 142.74019 * 12 11 10 14 14 C 1.53002 * 110.34161 * 264.99114 * 12 11 10 15 15 C 1.54277 * 104.96410 * 23.86654 * 12 11 10 16 16 H 1.08999 * 110.34688 * 118.97625 * 15 12 11 17 17 C 1.53001 * 110.34431 * 241.13173 * 15 12 11 18 18 N 1.46506 * 109.47025 * 183.52338 * 17 15 12 19 19 C 1.36937 * 119.99596 * 180.27015 * 18 17 15 20 20 H 1.07999 * 120.00355 * 359.73147 * 19 18 17 21 21 C 1.38807 * 119.99798 * 179.72148 * 19 18 17 22 22 N 1.31622 * 120.00316 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46822 * 60.00334 * 23 21 19 25 25 H 1.48501 * 109.46893 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47028 * 300.00413 * 23 21 19 27 27 C 1.48423 * 127.81981 * 177.09212 * 10 8 7 28 28 H 1.09000 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46910 * 300.00019 * 1 2 3 30 30 H 1.09002 * 109.47134 * 59.99973 * 1 2 3 31 31 H 1.08996 * 109.47022 * 240.00141 * 2 1 3 32 32 H 1.08994 * 109.46867 * 119.99426 * 2 1 3 33 33 H 1.08006 * 122.44391 * 359.97438 * 4 3 2 34 34 H 1.08004 * 124.52294 * 179.74697 * 5 4 3 35 35 H 1.08999 * 110.40659 * 21.59693 * 11 10 8 36 36 H 1.09001 * 110.40275 * 259.17333 * 11 10 8 37 37 H 1.09002 * 109.46700 * 175.53590 * 14 12 11 38 38 H 1.08993 * 109.47551 * 295.54341 * 14 12 11 39 39 H 1.09001 * 109.46518 * 55.54281 * 14 12 11 40 40 H 1.09001 * 109.47166 * 63.52091 * 17 15 12 41 41 H 1.08998 * 109.46457 * 303.52102 * 17 15 12 42 42 H 0.97000 * 120.00309 * 0.02562 * 18 17 15 43 43 H 0.96998 * 120.00175 * 180.02562 * 22 21 19 44 44 H 1.08991 * 110.44712 * 100.87416 * 27 10 8 45 45 H 1.09003 * 110.49296 * 338.35639 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3745 2.1016 -1.1444 5 6 2.8067 3.3533 -0.9525 6 16 2.7997 3.7538 0.7060 7 6 2.1889 2.1623 1.1371 8 6 1.8995 1.7027 2.4985 9 8 1.6123 0.5372 2.6991 10 7 1.9516 2.5708 3.5282 11 6 2.3365 4.0009 3.4926 12 6 1.3535 4.6932 4.4611 13 1 1.8599 5.4850 5.0131 14 6 0.1590 5.2601 3.6914 15 6 0.8917 3.5793 5.4236 16 1 1.1696 3.8248 6.4485 17 6 -0.6213 3.3781 5.3174 18 7 -1.0507 2.3773 6.2973 19 6 -2.3716 2.0265 6.3837 20 1 -3.0974 2.4908 5.7325 21 6 -2.7777 1.0741 7.3082 22 7 -1.8933 0.5084 8.1021 23 14 -4.5795 0.5950 7.4257 24 1 -5.0314 0.0454 6.1223 25 1 -4.7503 -0.4335 8.4831 26 1 -5.3890 1.7928 7.7653 27 6 1.6361 2.3104 4.9549 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3047 1.6566 -2.1260 34 1 3.1180 4.0212 -1.7421 35 1 2.2219 4.4004 2.4849 36 1 3.3626 4.1270 3.8380 37 1 -0.5629 5.6748 4.3950 38 1 0.5008 6.0448 3.0166 39 1 -0.3121 4.4643 3.1143 40 1 -0.8727 3.0352 4.3137 41 1 -1.1281 4.3223 5.5164 42 1 -0.3990 1.9605 6.8825 43 1 -2.1770 -0.1575 8.7479 44 1 2.5526 2.1737 5.5287 45 1 0.9930 1.4355 5.0501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754828618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:38 Heat of formation + Delta-G solvation = -9.886659 kcal Electronic energy + Delta-G solvation = -25772.065996 eV Core-core repulsion = 22301.588466 eV Total energy + Delta-G solvation = -3470.477529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38352 -39.88524 -38.43843 -36.41580 -34.29567 -33.70692 -32.86715 -31.32777 -29.88892 -28.05286 -26.82429 -26.17027 -24.77448 -23.57267 -23.20871 -21.71987 -20.37646 -19.44127 -19.19642 -18.70835 -17.54331 -17.12009 -16.72394 -16.56828 -15.72195 -15.65303 -15.42926 -15.27819 -15.03746 -14.79572 -14.66312 -14.31083 -14.04984 -13.89449 -13.67537 -13.42131 -13.31234 -13.20492 -12.88950 -12.86251 -12.78524 -12.77053 -12.34764 -12.23257 -11.97387 -11.90899 -11.78717 -11.69761 -11.33068 -11.22526 -10.92156 -10.89838 -9.98922 -9.63338 -9.33038 -9.00146 -7.97098 -5.25468 -0.46351 0.51930 0.96438 1.42266 1.42812 1.46876 1.52698 1.84542 2.14613 2.53650 3.34678 3.40369 3.47956 3.74848 3.83553 3.88482 4.11009 4.14683 4.25918 4.29769 4.31089 4.42426 4.48105 4.50319 4.56395 4.62329 4.72737 4.78404 4.80733 4.82932 4.90125 4.93197 5.03820 5.08411 5.09816 5.13253 5.24385 5.25965 5.37302 5.41960 5.45704 5.52017 5.56228 6.25490 6.47533 7.04643 7.31451 8.08069 8.30915 9.26272 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.003879 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.323695 B = 7217.115234 C = 8296.249267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.025 4.025 4 C -0.159 4.159 5 C -0.234 4.234 6 S 0.255 5.745 7 C -0.307 4.307 8 C 0.595 3.405 9 O -0.573 6.573 10 N -0.620 5.620 11 C 0.098 3.902 12 C -0.085 4.085 13 H 0.128 0.872 14 C -0.148 4.148 15 C -0.099 4.099 16 H 0.099 0.901 17 C 0.166 3.834 18 N -0.745 5.745 19 C -0.248 4.248 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.273 1.273 27 C 0.113 3.887 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.164 0.836 34 H 0.200 0.800 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.030 0.970 40 H -0.001 1.001 41 H 0.033 0.967 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.088 0.912 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.719 12.953 -19.761 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C -0.041 4.041 4 C -0.189 4.189 5 C -0.371 4.371 6 S 0.525 5.475 7 C -0.427 4.427 8 C 0.386 3.614 9 O -0.455 6.455 10 N -0.352 5.352 11 C -0.025 4.025 12 C -0.104 4.104 13 H 0.146 0.854 14 C -0.205 4.205 15 C -0.118 4.118 16 H 0.117 0.883 17 C 0.040 3.960 18 N -0.388 5.388 19 C -0.380 4.380 20 H 0.088 0.912 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.198 1.198 27 C -0.009 4.009 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.217 0.783 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.051 0.949 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.803 13.638 -19.001 27.680 hybrid contribution -1.454 -2.403 -0.149 2.813 sum 13.350 11.235 -19.151 25.907 Atomic orbital electron populations 1.21553 0.94746 1.01930 1.00734 1.20413 0.96121 0.91485 1.03420 1.19749 0.95682 0.97250 0.91419 1.20027 1.04631 0.94813 0.99442 1.26172 1.05158 1.01088 1.04669 1.82785 1.58914 1.08456 0.97388 1.24286 1.19951 1.02520 0.95929 1.17054 0.76666 0.84356 0.83293 1.90787 1.51148 1.18693 1.84839 1.48937 1.66605 1.12073 1.07630 1.23071 1.00399 0.78696 1.00361 1.22131 0.96325 0.96821 0.95133 0.85372 1.21926 0.97679 1.00547 1.00363 1.22289 0.94107 0.94552 1.00885 0.88326 1.20893 0.93259 0.91239 0.90576 1.42611 1.05820 1.47902 1.42440 1.19538 0.86331 1.17337 1.14794 0.91247 1.25543 1.01880 0.99973 0.99124 1.69802 1.34409 1.31847 1.25738 0.85251 0.80140 0.77713 0.76920 1.21024 1.21793 1.19834 1.22396 0.99490 0.98624 0.80396 0.91813 0.96093 0.91192 0.88576 0.91680 0.81875 0.78276 0.89325 0.87223 0.92015 0.89649 0.95032 0.98332 0.94897 0.79439 0.93966 0.89381 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.86 71.98 0.71 -2.98 16 2 C -0.08 -2.02 5.55 29.85 0.17 -1.85 16 3 C -0.02 -0.63 5.16 -20.42 -0.11 -0.73 16 4 C -0.16 -2.83 9.96 21.08 0.21 -2.62 16 5 C -0.23 -3.28 10.92 66.81 0.73 -2.55 16 6 S 0.25 4.26 18.70 -56.49 -1.06 3.21 16 7 C -0.31 -8.49 6.39 24.08 0.15 -8.34 16 8 C 0.60 21.27 7.86 86.42 0.68 21.95 16 9 O -0.57 -25.67 14.42 -4.33 -0.06 -25.73 16 10 N -0.62 -19.15 3.32 -812.04 -2.70 -21.85 16 11 C 0.10 1.95 5.88 86.53 0.51 2.46 16 12 C -0.08 -1.74 3.66 -9.89 -0.04 -1.78 16 13 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.15 -3.20 7.92 71.98 0.57 -2.63 16 15 C -0.10 -3.04 3.11 -9.89 -0.03 -3.07 16 16 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 17 C 0.17 6.89 4.41 86.38 0.38 7.27 16 18 N -0.74 -39.79 5.16 -343.44 -1.77 -41.56 16 19 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 22 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 23 Si 0.97 48.27 29.55 68.60 2.03 50.29 16 24 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 27 C 0.11 3.92 6.44 86.48 0.56 4.47 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.02 0.72 7.97 -2.38 -0.02 0.70 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.94 8.12 -2.39 -0.02 1.92 16 32 H 0.06 2.19 6.17 -2.39 -0.01 2.18 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.09 1.53 3.76 -20.31 -0.08 1.45 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.42 6.71 -2.39 -0.02 1.40 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.03 0.86 6.90 -2.39 -0.02 0.85 16 40 H 0.00 -0.06 7.01 -2.39 -0.02 -0.07 16 41 H 0.03 1.32 6.58 -2.39 -0.02 1.31 16 42 H 0.37 21.00 7.49 -92.71 -0.69 20.31 16 43 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.05 2.12 7.22 -2.39 -0.02 2.10 16 Total: -1.00 -79.40 365.31 2.76 -76.64 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.24 Total: 28.40 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.80 Total: -8.14 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -4.19 Total: -124.66 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.29 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.06 Total: 3.21 kcal Total: -79.40 2.76 -76.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.750 kcal (2) G-P(sol) polarization free energy of solvation -79.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds