Wall clock time and date at job start Sat Apr 11 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47411 * 81.66728 * 3 2 1 5 5 N 1.46898 * 109.47364 * 180.56384 * 4 3 2 6 6 C 1.46902 * 111.00150 * 299.23981 * 5 4 3 7 7 C 1.50698 * 109.46906 * 293.73399 * 6 5 4 8 8 H 1.07994 * 120.00358 * 354.95485 * 7 6 5 9 9 C 1.37881 * 119.99767 * 174.95263 * 7 6 5 10 10 N 1.31513 * 120.00056 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47586 * 59.99926 * 11 9 7 13 13 H 1.48498 * 109.47428 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47271 * 299.99796 * 11 9 7 15 15 C 1.46904 * 111.00088 * 63.19304 * 5 4 3 16 16 C 1.50699 * 109.46877 * 66.04737 * 15 5 4 17 17 C 1.38041 * 120.05965 * 259.72543 * 16 15 5 18 18 C 1.38305 * 120.11904 * 179.70552 * 17 16 15 19 19 C 1.38347 * 120.24072 * 0.59393 * 18 17 16 20 20 C 1.37995 * 120.12344 * 359.68430 * 19 18 17 21 21 C 1.39313 * 120.06184 * 80.00769 * 16 15 5 22 22 C 1.48393 * 120.12028 * 0.02562 * 21 16 15 23 23 C 1.39705 * 120.92077 * 309.72651 * 22 21 16 24 24 N 1.32201 * 118.95595 * 179.74459 * 23 22 21 25 25 C 1.31823 * 120.94021 * 0.56242 * 24 23 22 26 26 N 1.31825 * 122.04251 * 359.68494 * 25 24 23 27 27 C 1.32199 * 120.94782 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47304 * 321.66179 * 3 2 1 29 29 H 1.09002 * 109.46832 * 201.66457 * 3 2 1 30 30 H 1.08995 * 109.47317 * 60.56383 * 4 3 2 31 31 H 1.09004 * 109.46943 * 300.56163 * 4 3 2 32 32 H 1.09003 * 109.46485 * 53.73181 * 6 5 4 33 33 H 1.09001 * 109.47325 * 173.73420 * 6 5 4 34 34 H 0.97002 * 119.99827 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47171 * 186.04585 * 15 5 4 36 36 H 1.09002 * 109.47373 * 306.04627 * 15 5 4 37 37 H 1.08000 * 119.93916 * 359.97276 * 17 16 15 38 38 H 1.07996 * 119.87934 * 180.27946 * 18 17 16 39 39 H 1.08000 * 119.93450 * 179.70415 * 19 18 17 40 40 H 1.07995 * 120.06176 * 180.02562 * 20 19 18 41 41 H 1.08000 * 120.52150 * 359.97438 * 23 22 21 42 42 H 1.08000 * 118.98090 * 179.70829 * 25 24 23 43 43 H 1.07992 * 120.52895 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.2082 -1.4272 5 7 4.5870 -0.2210 -1.4252 6 6 5.1240 1.0539 -0.9309 7 6 4.7810 2.1538 -1.9023 8 1 4.2922 1.9169 -2.8357 9 6 5.0913 3.4626 -1.5994 10 7 5.6861 3.7512 -0.4625 11 14 4.6655 4.8260 -2.8032 12 1 3.1978 4.8480 -3.0274 13 1 5.1013 6.1319 -2.2464 14 1 5.3597 4.5822 -4.0931 15 6 5.1026 -1.3496 -0.6388 16 6 4.7337 -2.6441 -1.3165 17 6 3.6581 -3.3804 -0.8622 18 6 3.3147 -4.5655 -1.4870 19 6 4.0537 -5.0259 -2.5622 20 6 5.1344 -4.3007 -3.0210 21 6 5.4811 -3.1028 -2.3990 22 6 6.6426 -2.3191 -2.8875 23 6 6.5244 -0.9537 -3.1587 24 7 7.5856 -0.2921 -3.5875 25 6 8.7383 -0.9050 -3.7699 26 7 8.8915 -2.1923 -3.5310 27 6 7.8831 -2.9275 -3.0945 28 1 2.9717 -0.8052 0.6374 29 1 2.9708 0.9559 0.3794 30 1 2.7627 0.6031 -2.0624 31 1 2.7470 -1.1588 -1.8102 32 1 4.6873 1.2792 0.0421 33 1 6.2072 0.9790 -0.8345 34 1 5.9047 4.6720 -0.2495 35 1 6.1875 -1.2749 -0.5642 36 1 4.6672 -1.3255 0.3601 37 1 3.0810 -3.0282 -0.0200 38 1 2.4697 -5.1361 -1.1312 39 1 3.7840 -5.9544 -3.0434 40 1 5.7103 -4.6608 -3.8606 41 1 5.5819 -0.4459 -3.0168 42 1 9.5836 -0.3347 -4.1258 43 1 8.0163 -3.9814 -2.9006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140021612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:46:05 Heat of formation + Delta-G solvation = 100.391209 kcal Electronic energy + Delta-G solvation = -27023.477448 eV Core-core repulsion = 23454.630726 eV Total energy + Delta-G solvation = -3568.846722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92893 -40.38177 -38.83675 -37.32226 -34.72698 -34.48076 -34.31775 -32.69217 -31.61767 -30.35305 -28.81610 -26.66164 -25.51068 -25.33211 -24.93087 -22.80925 -22.29889 -20.95284 -19.02815 -18.29948 -18.20363 -18.12560 -17.55500 -16.93766 -16.47665 -16.26832 -16.07801 -15.53595 -15.36548 -15.19105 -15.06884 -14.63385 -14.42236 -14.34480 -13.97752 -13.83969 -13.53495 -13.48642 -13.31526 -13.03536 -12.90854 -12.70265 -12.66423 -12.42383 -12.36844 -12.03562 -11.76600 -11.62470 -11.59113 -11.40059 -11.17965 -10.68791 -10.48355 -10.04126 -9.64781 -9.22940 -8.92272 -8.09768 -6.14199 -0.21330 0.33625 0.55772 0.72236 1.45989 1.48430 1.53731 1.79356 1.82985 2.47178 2.83162 2.96561 3.08856 3.26900 3.35063 3.45764 3.62468 3.68347 3.86941 4.00025 4.03331 4.21069 4.24732 4.31989 4.40198 4.45651 4.53073 4.65477 4.72992 4.78610 4.82281 4.93606 5.10552 5.18306 5.22498 5.26288 5.41187 5.42225 5.59903 5.70168 5.73912 5.76990 5.82628 6.11322 6.14974 6.24622 6.29474 6.58273 6.64018 6.99747 7.31515 7.54070 8.99929 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009040 B = 0.005972 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.754317 B = 4687.786175 C = 7225.546448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.245 3.755 3 C -0.060 4.060 4 C 0.072 3.928 5 N -0.522 5.522 6 C 0.206 3.794 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.016 3.984 10 N -0.928 5.928 11 Si 0.943 3.057 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.276 1.276 15 C 0.082 3.918 16 C -0.065 4.065 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.037 4.037 22 C -0.156 4.156 23 C 0.153 3.847 24 N -0.543 5.543 25 C 0.271 3.729 26 N -0.539 5.539 27 C 0.149 3.851 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.000 1.000 33 H -0.002 1.002 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.204 0.796 42 H 0.208 0.792 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -18.912 -1.730 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.071 4.071 3 C -0.102 4.102 4 C -0.058 4.058 5 N -0.244 5.244 6 C 0.081 3.919 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.183 4.183 10 N -0.569 5.569 11 Si 0.770 3.230 12 H -0.197 1.197 13 H -0.217 1.217 14 H -0.202 1.202 15 C -0.045 4.045 16 C -0.066 4.066 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.039 4.039 22 C -0.161 4.161 23 C -0.012 4.012 24 N -0.256 5.256 25 C -0.016 4.016 26 N -0.252 5.252 27 C -0.017 4.017 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.220 0.780 42 H 0.224 0.776 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.884 -18.249 -2.444 18.433 hybrid contribution -0.237 1.194 0.674 1.391 sum -1.121 -17.055 -1.770 17.183 Atomic orbital electron populations 1.81178 1.14211 1.11138 1.10639 1.29312 0.95158 0.91225 0.91445 1.20137 0.80615 1.06588 1.02849 1.22034 0.87494 1.03001 0.93236 1.62197 1.06599 1.03555 1.52022 1.19452 0.93480 0.84905 0.94077 1.21299 1.37550 0.91148 1.04128 0.92047 1.25527 0.95523 1.00819 0.96425 1.70019 1.43175 1.19507 1.24222 0.85839 0.78617 0.78819 0.79735 1.19706 1.21733 1.20179 1.21107 0.99617 0.88266 0.95520 1.19778 0.95764 0.95303 0.95737 1.21180 0.96051 0.95368 1.00753 1.21479 1.00016 0.95929 0.95863 1.21349 0.94861 1.00492 0.96891 1.21327 0.98137 0.93353 0.99787 1.18326 0.94456 0.94922 0.96199 1.20683 0.96276 0.95709 1.03385 1.25291 0.99253 0.90975 0.85686 1.68620 1.01171 1.41310 1.14547 1.25416 0.95364 0.88631 0.92171 1.68417 1.33886 1.08290 1.14629 1.23732 0.86937 1.01018 0.90033 0.85125 0.87533 0.90918 0.89225 0.98202 0.98429 0.93183 0.92433 0.91678 0.84611 0.83845 0.83488 0.84751 0.78027 0.77565 0.79156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.35 18.54 20.00 0.37 -15.98 16 2 C 0.25 6.99 15.43 89.44 1.38 8.37 16 3 C -0.06 -1.54 5.04 28.79 0.15 -1.39 16 4 C 0.07 2.06 4.87 86.30 0.42 2.48 16 5 N -0.52 -16.97 1.44 -905.36 -1.30 -18.28 16 6 C 0.21 8.92 4.21 85.56 0.36 9.28 16 7 C -0.50 -24.88 8.40 25.60 0.22 -24.67 16 8 H 0.06 3.02 7.32 -2.91 -0.02 3.00 16 9 C 0.02 0.82 5.46 84.66 0.46 1.28 16 10 N -0.93 -51.94 13.29 21.45 0.28 -51.66 16 11 Si 0.94 42.94 29.54 68.60 2.03 44.96 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.08 2.21 3.94 85.56 0.34 2.55 16 16 C -0.07 -1.48 4.57 -19.65 -0.09 -1.57 16 17 C -0.12 -2.07 8.65 22.24 0.19 -1.88 16 18 C -0.12 -1.74 10.04 22.31 0.22 -1.51 16 19 C -0.12 -1.74 10.03 22.24 0.22 -1.52 16 20 C -0.11 -1.95 9.55 22.48 0.21 -1.74 16 21 C -0.04 -0.86 5.52 -20.04 -0.11 -0.97 16 22 C -0.16 -4.31 4.78 -19.86 -0.09 -4.41 16 23 C 0.15 5.29 9.21 84.99 0.78 6.07 16 24 N -0.54 -20.20 10.42 -199.20 -2.08 -22.28 16 25 C 0.27 8.44 12.27 180.87 2.22 10.66 16 26 N -0.54 -15.48 10.42 -199.21 -2.08 -17.56 16 27 C 0.15 3.73 10.85 84.99 0.92 4.65 16 28 H 0.13 2.49 6.02 -2.39 -0.01 2.47 16 29 H 0.11 3.24 6.32 -2.39 -0.02 3.22 16 30 H 0.07 2.44 6.96 -2.39 -0.02 2.42 16 31 H 0.09 2.21 6.48 -2.38 -0.02 2.20 16 32 H 0.00 0.01 6.02 -2.39 -0.01 0.00 16 33 H 0.00 -0.12 7.93 -2.39 -0.02 -0.14 16 34 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.06 1.81 6.96 -2.39 -0.02 1.79 16 36 H 0.07 1.51 5.95 -2.39 -0.01 1.49 16 37 H 0.14 2.01 7.73 -2.91 -0.02 1.99 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.20 7.65 4.73 -2.91 -0.01 7.64 16 42 H 0.21 5.20 8.06 -2.91 -0.02 5.17 16 43 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -64.19 358.81 6.08 -58.11 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.05 Total: 17.00 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 7.80 Total: 5.69 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -4.80 Total: -125.75 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.19 6.08 -58.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140021612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.497 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds