Wall clock time and date at job start Sat Apr 11 2020 00:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47334 * 2 1 4 4 C 1.37983 * 120.04684 * 262.00845 * 3 2 1 5 5 C 1.38304 * 120.17668 * 180.27550 * 4 3 2 6 6 C 1.38591 * 120.26322 * 359.76211 * 5 4 3 7 7 F 1.35100 * 119.95269 * 179.97438 * 6 5 4 8 8 C 1.38172 * 120.09553 * 359.95754 * 6 5 4 9 9 C 1.39554 * 120.04887 * 81.74718 * 3 2 1 10 10 C 1.47854 * 120.13230 * 359.97438 * 9 3 2 11 11 O 1.21546 * 120.00038 * 354.10043 * 10 9 3 12 12 N 1.34780 * 119.99897 * 174.10065 * 10 9 3 13 13 C 1.46497 * 119.99807 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47324 * 325.00313 * 13 12 10 15 15 C 1.53000 * 109.46969 * 85.00010 * 13 12 10 16 16 C 1.52994 * 109.47104 * 204.99774 * 13 12 10 17 17 C 1.53003 * 109.47123 * 65.00441 * 16 13 12 18 18 H 1.09007 * 109.46753 * 304.99560 * 17 16 13 19 19 C 1.52996 * 109.47084 * 185.00145 * 17 16 13 20 20 N 1.46493 * 109.47332 * 64.99541 * 17 16 13 21 21 C 1.36939 * 120.00334 * 205.00104 * 20 17 16 22 22 H 1.08001 * 119.99740 * 0.02562 * 21 20 17 23 23 C 1.38809 * 119.99998 * 179.72751 * 21 20 17 24 24 N 1.31624 * 120.00212 * 0.27495 * 23 21 20 25 25 Si 1.86798 * 119.99729 * 180.27904 * 23 21 20 26 26 H 1.48494 * 109.47316 * 90.00003 * 25 23 21 27 27 H 1.48506 * 109.46732 * 209.99885 * 25 23 21 28 28 H 1.48495 * 109.47101 * 329.99558 * 25 23 21 29 29 H 1.09007 * 109.46764 * 60.00034 * 1 2 3 30 30 H 1.08994 * 109.47680 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47238 * 300.00386 * 1 2 3 32 32 H 1.08993 * 109.47258 * 239.99635 * 2 1 3 33 33 H 1.09003 * 109.47363 * 119.99558 * 2 1 3 34 34 H 1.08008 * 119.91397 * 0.02562 * 4 3 2 35 35 H 1.07992 * 119.86986 * 179.74237 * 5 4 3 36 36 H 1.07998 * 120.09115 * 180.02562 * 8 6 5 37 37 H 0.97004 * 119.99901 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47551 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.47433 * 300.00125 * 15 13 12 40 40 H 1.08998 * 109.47303 * 60.00212 * 15 13 12 41 41 H 1.09004 * 109.47187 * 305.00203 * 16 13 12 42 42 H 1.09001 * 109.47674 * 184.99919 * 16 13 12 43 43 H 1.08996 * 109.47821 * 59.99805 * 19 17 16 44 44 H 1.09008 * 109.46719 * 179.97438 * 19 17 16 45 45 H 1.08999 * 109.47162 * 299.99298 * 19 17 16 46 46 H 0.97009 * 120.00030 * 25.00898 * 20 17 16 47 47 H 0.96994 * 120.00162 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4192 2.0169 -1.1828 5 6 2.8861 3.3187 -1.1851 6 6 2.9639 4.0349 -0.0012 7 9 3.4214 5.3061 -0.0106 8 6 2.5740 3.4509 1.1888 9 6 2.1018 2.1375 1.1955 10 6 1.6826 1.5059 2.4649 11 8 1.1768 0.4007 2.4558 12 7 1.8614 2.1557 3.6321 13 6 1.4455 1.5301 4.8898 14 1 0.5420 0.9436 4.7226 15 6 2.5612 0.6145 5.3973 16 6 1.1636 2.6155 5.9305 17 6 -0.0340 3.4548 5.4806 18 1 0.1532 3.8487 4.4815 19 6 -0.2387 4.6154 6.4561 20 7 -1.2361 2.6178 5.4581 21 6 -2.2846 2.9471 4.6412 22 1 -2.2252 3.8237 4.0131 23 6 -3.4213 2.1508 4.6158 24 7 -3.4935 1.0822 5.3809 25 14 -4.8484 2.5957 3.4956 26 1 -4.6634 1.9424 2.1750 27 1 -6.1199 2.1293 4.1049 28 1 -4.8965 4.0690 3.3167 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3612 1.4639 -2.1088 35 1 3.1915 3.7789 -2.1131 36 1 2.6343 4.0092 2.1113 37 1 2.2654 3.0375 3.6393 38 1 2.2520 0.1493 6.3334 39 1 2.7621 -0.1588 4.6559 40 1 3.4647 1.2009 5.5646 41 1 2.0389 3.2570 6.0327 42 1 0.9405 2.1496 6.8903 43 1 0.6556 5.2382 6.4728 44 1 -1.0917 5.2136 6.1353 45 1 -0.4260 4.2216 7.4551 46 1 -1.2894 1.8303 6.0221 47 1 -4.2877 0.5256 5.3629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134853489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:39 Heat of formation + Delta-G solvation = -58.706882 kcal Electronic energy + Delta-G solvation = -28242.770476 eV Core-core repulsion = 24339.795861 eV Total energy + Delta-G solvation = -3902.974615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.03437 -40.42420 -38.46266 -36.76955 -34.71726 -33.57174 -32.36316 -31.72497 -30.11604 -29.03715 -28.57186 -26.32378 -24.57836 -23.58668 -23.57427 -21.89005 -20.75113 -20.39509 -19.68938 -18.23481 -17.16940 -16.89065 -15.95222 -15.89425 -15.73300 -15.67311 -14.85725 -14.55510 -14.26790 -14.14223 -13.90609 -13.69674 -13.57386 -13.29225 -12.97896 -12.75220 -12.66817 -12.43578 -12.14063 -11.97969 -11.73050 -11.68549 -11.60638 -11.55520 -11.03963 -11.00208 -10.81049 -10.68545 -10.59534 -10.41150 -10.20611 -9.88097 -9.59802 -9.37527 -9.29976 -8.85663 -8.77625 -8.59703 -6.89710 -5.70765 -2.98537 0.63727 0.98399 2.87753 3.34471 3.47020 3.52116 3.53164 3.69647 4.03632 4.46800 4.57356 4.64317 4.71257 4.91932 5.06390 5.14805 5.36602 5.41428 5.49464 5.54700 5.63176 5.64376 5.67216 5.69596 5.77376 5.89149 5.91492 5.94265 5.99125 6.02351 6.12066 6.14197 6.24545 6.29979 6.35456 6.43983 6.51757 6.57622 6.65325 6.69963 6.75476 6.83957 6.93910 7.08520 7.74857 7.75459 8.47417 8.49132 9.59117 10.16168 10.50555 11.51919 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009821 B = 0.004534 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.219215 B = 6174.514151 C = 6860.954415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 C -0.030 4.030 4 C -0.101 4.101 5 C -0.130 4.130 6 C 0.083 3.917 7 F -0.139 7.139 8 C -0.118 4.118 9 C -0.100 4.100 10 C 0.556 3.444 11 O -0.512 6.512 12 N -0.711 5.711 13 C 0.144 3.856 14 H 0.108 0.892 15 C -0.161 4.161 16 C -0.132 4.132 17 C 0.171 3.829 18 H 0.045 0.955 19 C -0.165 4.165 20 N -0.719 5.719 21 C -0.233 4.233 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.900 3.100 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.392 0.608 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.033 0.967 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.165 2.459 -8.908 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.031 4.031 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.063 3.937 7 F -0.118 7.118 8 C -0.138 4.138 9 C -0.103 4.103 10 C 0.342 3.658 11 O -0.389 6.389 12 N -0.362 5.362 13 C 0.041 3.959 14 H 0.126 0.874 15 C -0.219 4.219 16 C -0.170 4.170 17 C 0.061 3.939 18 H 0.063 0.937 19 C -0.226 4.226 20 N -0.361 5.361 21 C -0.365 4.365 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.227 0.773 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.675 1.767 -8.996 19.029 hybrid contribution -0.627 0.934 -0.417 1.200 sum 16.048 2.701 -9.413 18.800 Atomic orbital electron populations 1.21641 0.93671 1.02012 1.02180 1.20767 0.97331 0.91039 1.03314 1.20187 0.94494 0.97135 0.91258 1.20916 0.98815 0.94128 0.98045 1.21283 1.01113 0.95252 0.97245 1.17482 1.01479 0.80113 0.94577 1.91509 1.86668 1.36301 1.97333 1.21279 0.99617 0.95157 0.97703 1.19781 1.02255 0.93713 0.94547 1.17983 0.78962 0.85616 0.83192 1.90764 1.42243 1.19352 1.86570 1.45927 1.62962 1.20877 1.06395 1.21061 0.98416 0.94367 0.82081 0.87398 1.22182 0.98483 0.99772 1.01455 1.22178 0.98820 0.97422 0.98604 1.20219 0.86828 0.90565 0.96262 0.93728 1.22458 0.99797 0.99570 1.00743 1.42384 1.13597 1.29718 1.50419 1.19141 0.93884 1.07300 1.16135 0.91598 1.24668 0.98349 0.97589 1.00048 1.69643 1.29122 1.16822 1.42347 0.86291 0.82542 0.77534 0.80466 1.21764 1.21836 1.20933 0.93891 0.92532 0.90879 0.92130 0.88096 0.84467 0.84490 0.84378 0.77336 0.91675 0.92464 0.93189 0.92097 0.90516 0.94751 0.92914 0.93511 0.78333 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.42 37.16 0.35 -1.70 16 2 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 3 C -0.03 -0.38 5.17 -104.22 -0.54 -0.92 16 4 C -0.10 -1.03 9.66 -39.65 -0.38 -1.41 16 5 C -0.13 -1.29 10.02 -39.43 -0.40 -1.69 16 6 C 0.08 0.95 7.29 -39.48 -0.29 0.66 16 7 F -0.14 -1.64 17.26 2.25 0.04 -1.60 16 8 C -0.12 -1.41 9.51 -39.11 -0.37 -1.78 16 9 C -0.10 -1.37 5.87 -104.97 -0.62 -1.99 16 10 C 0.56 8.92 7.60 -12.32 -0.09 8.82 16 11 O -0.51 -9.72 11.23 5.32 0.06 -9.66 16 12 N -0.71 -10.20 4.40 -54.75 -0.24 -10.44 16 13 C 0.14 2.26 2.52 -67.94 -0.17 2.09 16 14 H 0.11 2.21 7.05 -51.93 -0.37 1.85 16 15 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 16 C -0.13 -1.96 4.29 -26.73 -0.11 -2.07 16 17 C 0.17 3.21 2.84 -67.93 -0.19 3.01 16 18 H 0.04 0.86 7.56 -51.93 -0.39 0.47 16 19 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 20 N -0.72 -17.43 4.49 -53.43 -0.24 -17.67 16 21 C -0.23 -6.44 9.93 -15.06 -0.15 -6.59 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 25 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.36 6.55 -51.93 -0.34 1.02 16 32 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 33 H 0.10 1.49 5.97 -51.93 -0.31 1.18 16 34 H 0.14 1.05 8.05 -52.48 -0.42 0.62 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.40 6.45 -52.49 -0.34 1.07 16 37 H 0.39 4.60 6.67 -40.82 -0.27 4.33 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -31.61 384.97 -8.76 -40.37 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -7.37 Total: 12.40 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.50 Total: -9.56 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.24 Total: -55.61 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.06 Total: -9.66 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.61 -8.76 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134853489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.339 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds